Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23865

Experiment: carbonsource_all

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02125 and AMB_RS23865 are separated by 244 nucleotidesAMB_RS23865 and AMB_RS23870 are separated by 202 nucleotides AMB_RS02125: AMB_RS02125 - LemA family protein, at 446,429 to 447,079 _RS02125 AMB_RS23865: AMB_RS23865 - DUF2786 domain-containing protein, at 447,324 to 448,025 _RS23865 AMB_RS23870: AMB_RS23870 - ParA family protein, at 448,228 to 448,884 _RS23870 Position (kb) 447 448 449Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 446.350 kb on + strandat 446.351 kb on - strandat 446.398 kb on - strandat 446.435 kb on - strandat 446.502 kb on + strand, within AMB_RS02125at 446.710 kb on - strand, within AMB_RS02125at 446.815 kb on + strand, within AMB_RS02125at 446.815 kb on + strand, within AMB_RS02125at 447.030 kb on - strandat 447.088 kb on - strandat 447.088 kb on - strandat 447.088 kb on - strandat 447.176 kb on + strandat 447.176 kb on + strandat 447.176 kb on + strandat 447.176 kb on + strandat 447.177 kb on - strandat 447.177 kb on - strandat 447.177 kb on - strandat 447.177 kb on - strandat 447.177 kb on - strandat 447.177 kb on - strandat 447.187 kb on + strandat 447.278 kb on - strandat 447.395 kb on + strand, within AMB_RS23865at 447.620 kb on - strand, within AMB_RS23865at 447.657 kb on + strand, within AMB_RS23865at 447.853 kb on + strand, within AMB_RS23865at 448.024 kb on - strandat 448.046 kb on + strandat 448.073 kb on + strandat 448.073 kb on + strandat 448.088 kb on + strandat 448.089 kb on - strandat 448.092 kb on + strandat 448.093 kb on - strandat 448.096 kb on + strandat 448.096 kb on + strandat 448.145 kb on + strandat 448.145 kb on + strandat 448.335 kb on - strand, within AMB_RS23870at 448.335 kb on - strand, within AMB_RS23870at 448.335 kb on - strand, within AMB_RS23870at 448.335 kb on - strand, within AMB_RS23870at 448.465 kb on + strand, within AMB_RS23870at 448.485 kb on + strand, within AMB_RS23870at 448.485 kb on + strand, within AMB_RS23870at 448.485 kb on + strand, within AMB_RS23870at 448.485 kb on + strand, within AMB_RS23870at 448.508 kb on + strand, within AMB_RS23870at 448.526 kb on - strand, within AMB_RS23870at 448.545 kb on - strand, within AMB_RS23870at 448.545 kb on - strand, within AMB_RS23870at 448.557 kb on - strand, within AMB_RS23870at 448.557 kb on - strand, within AMB_RS23870at 448.629 kb on + strand, within AMB_RS23870at 448.641 kb on - strand, within AMB_RS23870at 448.641 kb on - strand, within AMB_RS23870at 448.709 kb on + strand, within AMB_RS23870at 448.709 kb on + strand, within AMB_RS23870at 448.729 kb on + strand, within AMB_RS23870at 448.729 kb on + strand, within AMB_RS23870at 448.729 kb on + strand, within AMB_RS23870at 448.729 kb on + strand, within AMB_RS23870at 448.730 kb on - strand, within AMB_RS23870at 448.730 kb on - strand, within AMB_RS23870at 448.730 kb on - strand, within AMB_RS23870at 448.760 kb on - strand, within AMB_RS23870at 448.760 kb on - strand, within AMB_RS23870at 448.773 kb on + strand, within AMB_RS23870at 448.851 kb on + strandat 448.854 kb on + strandat 448.855 kb on - strandat 448.862 kb on + strandat 448.862 kb on + strandat 448.862 kb on + strandat 448.863 kb on - strandat 448.867 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_all
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446,350 + +0.9
446,351 - +1.2
446,398 - +1.4
446,435 - -1.0
446,502 + AMB_RS02125 0.11 -0.2
446,710 - AMB_RS02125 0.43 -1.1
446,815 + AMB_RS02125 0.59 -1.1
446,815 + AMB_RS02125 0.59 -0.7
447,030 - +1.2
447,088 - +0.2
447,088 - +0.6
447,088 - -2.6
447,176 + +2.8
447,176 + -0.1
447,176 + +0.0
447,176 + +1.6
447,177 - +1.1
447,177 - -0.4
447,177 - -1.0
447,177 - -0.5
447,177 - -2.3
447,177 - +1.4
447,187 + +0.0
447,278 - +0.8
447,395 + AMB_RS23865 0.10 +0.4
447,620 - AMB_RS23865 0.42 -0.4
447,657 + AMB_RS23865 0.47 -1.0
447,853 + AMB_RS23865 0.75 -1.2
448,024 - -0.4
448,046 + +0.6
448,073 + +2.6
448,073 + +1.4
448,088 + +1.0
448,089 - +0.3
448,092 + +1.5
448,093 - +0.4
448,096 + +0.0
448,096 + +0.0
448,145 + +1.2
448,145 + +0.8
448,335 - AMB_RS23870 0.16 +1.4
448,335 - AMB_RS23870 0.16 +0.4
448,335 - AMB_RS23870 0.16 +2.7
448,335 - AMB_RS23870 0.16 +0.0
448,465 + AMB_RS23870 0.36 +1.1
448,485 + AMB_RS23870 0.39 +4.0
448,485 + AMB_RS23870 0.39 -2.8
448,485 + AMB_RS23870 0.39 +1.9
448,485 + AMB_RS23870 0.39 +0.0
448,508 + AMB_RS23870 0.43 +3.0
448,526 - AMB_RS23870 0.45 +0.2
448,545 - AMB_RS23870 0.48 +0.0
448,545 - AMB_RS23870 0.48 +2.0
448,557 - AMB_RS23870 0.50 -1.6
448,557 - AMB_RS23870 0.50 +0.9
448,629 + AMB_RS23870 0.61 -0.8
448,641 - AMB_RS23870 0.63 -1.6
448,641 - AMB_RS23870 0.63 +0.0
448,709 + AMB_RS23870 0.73 +0.2
448,709 + AMB_RS23870 0.73 +0.7
448,729 + AMB_RS23870 0.76 +0.6
448,729 + AMB_RS23870 0.76 +0.6
448,729 + AMB_RS23870 0.76 +2.6
448,729 + AMB_RS23870 0.76 +0.9
448,730 - AMB_RS23870 0.76 +0.7
448,730 - AMB_RS23870 0.76 -2.3
448,730 - AMB_RS23870 0.76 +0.1
448,760 - AMB_RS23870 0.81 +2.1
448,760 - AMB_RS23870 0.81 +0.5
448,773 + AMB_RS23870 0.83 -0.4
448,851 + -1.0
448,854 + +0.9
448,855 - +1.0
448,862 + +1.1
448,862 + +2.8
448,862 + -1.3
448,863 - +0.0
448,867 - -1.3

Or see this region's nucleotide sequence