Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22060

Experiment: carbonsource_all

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22050 and AMB_RS22055 are separated by 114 nucleotidesAMB_RS22055 and AMB_RS22060 are separated by 3 nucleotidesAMB_RS22060 and AMB_RS22065 are separated by 383 nucleotides AMB_RS22050: AMB_RS22050 - NCS2 family permease, at 4,761,816 to 4,763,114 _RS22050 AMB_RS22055: AMB_RS22055 - HPP family protein, at 4,763,229 to 4,763,741 _RS22055 AMB_RS22060: AMB_RS22060 - XRE family transcriptional regulator, at 4,763,745 to 4,764,128 _RS22060 AMB_RS22065: AMB_RS22065 - class I SAM-dependent rRNA methyltransferase, at 4,764,512 to 4,765,717 _RS22065 Position (kb) 4763 4764 4765Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4762.855 kb on + strand, within AMB_RS22050at 4762.855 kb on + strand, within AMB_RS22050at 4762.855 kb on + strand, within AMB_RS22050at 4762.856 kb on - strand, within AMB_RS22050at 4762.865 kb on - strand, within AMB_RS22050at 4762.865 kb on - strand, within AMB_RS22050at 4762.903 kb on + strand, within AMB_RS22050at 4762.904 kb on - strand, within AMB_RS22050at 4762.904 kb on - strand, within AMB_RS22050at 4762.965 kb on + strand, within AMB_RS22050at 4763.021 kb on + strandat 4763.021 kb on + strandat 4763.022 kb on - strandat 4763.022 kb on - strandat 4763.022 kb on - strandat 4763.023 kb on + strandat 4763.023 kb on + strandat 4763.023 kb on + strandat 4763.023 kb on + strandat 4763.023 kb on + strandat 4763.023 kb on + strandat 4763.023 kb on + strandat 4763.023 kb on + strandat 4763.023 kb on + strandat 4763.024 kb on - strandat 4763.024 kb on - strandat 4763.024 kb on - strandat 4763.024 kb on - strandat 4763.024 kb on - strandat 4763.024 kb on - strandat 4763.024 kb on - strandat 4763.189 kb on - strandat 4763.703 kb on + strandat 4763.703 kb on + strandat 4763.746 kb on + strandat 4763.746 kb on + strandat 4763.747 kb on - strandat 4763.791 kb on + strand, within AMB_RS22060at 4763.792 kb on - strand, within AMB_RS22060at 4763.792 kb on - strand, within AMB_RS22060at 4763.792 kb on - strand, within AMB_RS22060at 4763.792 kb on - strand, within AMB_RS22060at 4763.827 kb on + strand, within AMB_RS22060at 4763.828 kb on - strand, within AMB_RS22060at 4763.830 kb on + strand, within AMB_RS22060at 4763.968 kb on + strand, within AMB_RS22060at 4763.968 kb on + strand, within AMB_RS22060at 4763.969 kb on - strand, within AMB_RS22060at 4763.969 kb on - strand, within AMB_RS22060at 4764.043 kb on + strand, within AMB_RS22060at 4764.159 kb on - strandat 4764.159 kb on - strandat 4764.253 kb on + strandat 4764.285 kb on - strandat 4764.337 kb on + strandat 4764.338 kb on - strandat 4764.341 kb on + strandat 4764.344 kb on + strandat 4764.362 kb on + strandat 4764.363 kb on - strandat 4764.452 kb on + strandat 4764.465 kb on + strandat 4764.538 kb on + strandat 4764.538 kb on + strandat 4764.538 kb on + strandat 4764.538 kb on + strandat 4764.538 kb on + strandat 4764.538 kb on + strandat 4764.543 kb on + strandat 4764.543 kb on + strandat 4764.544 kb on - strandat 4765.005 kb on + strand, within AMB_RS22065at 4765.005 kb on + strand, within AMB_RS22065at 4765.005 kb on + strand, within AMB_RS22065at 4765.006 kb on - strand, within AMB_RS22065at 4765.006 kb on - strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.009 kb on + strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.010 kb on - strand, within AMB_RS22065at 4765.011 kb on + strand, within AMB_RS22065at 4765.011 kb on + strand, within AMB_RS22065at 4765.011 kb on + strand, within AMB_RS22065at 4765.011 kb on + strand, within AMB_RS22065at 4765.012 kb on - strand, within AMB_RS22065at 4765.012 kb on - strand, within AMB_RS22065

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_all
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4,762,855 + AMB_RS22050 0.80 +1.2
4,762,855 + AMB_RS22050 0.80 +0.6
4,762,855 + AMB_RS22050 0.80 +3.2
4,762,856 - AMB_RS22050 0.80 +0.3
4,762,865 - AMB_RS22050 0.81 +0.9
4,762,865 - AMB_RS22050 0.81 +2.0
4,762,903 + AMB_RS22050 0.84 +1.0
4,762,904 - AMB_RS22050 0.84 -1.2
4,762,904 - AMB_RS22050 0.84 +0.7
4,762,965 + AMB_RS22050 0.88 -0.4
4,763,021 + -2.2
4,763,021 + +1.0
4,763,022 - +0.3
4,763,022 - -0.8
4,763,022 - +1.1
4,763,023 + +0.6
4,763,023 + +0.8
4,763,023 + -2.0
4,763,023 + +1.5
4,763,023 + +0.4
4,763,023 + +0.9
4,763,023 + +0.3
4,763,023 + +0.7
4,763,023 + -2.0
4,763,024 - +0.3
4,763,024 - -2.8
4,763,024 - +1.6
4,763,024 - +1.1
4,763,024 - -2.0
4,763,024 - +0.9
4,763,024 - +0.5
4,763,189 - +0.7
4,763,703 + -0.1
4,763,703 + -2.8
4,763,746 + +0.6
4,763,746 + -1.7
4,763,747 - +0.4
4,763,791 + AMB_RS22060 0.12 +1.0
4,763,792 - AMB_RS22060 0.12 +3.4
4,763,792 - AMB_RS22060 0.12 +0.0
4,763,792 - AMB_RS22060 0.12 +0.8
4,763,792 - AMB_RS22060 0.12 +0.8
4,763,827 + AMB_RS22060 0.21 +1.6
4,763,828 - AMB_RS22060 0.22 -0.1
4,763,830 + AMB_RS22060 0.22 -1.8
4,763,968 + AMB_RS22060 0.58 +0.3
4,763,968 + AMB_RS22060 0.58 +1.7
4,763,969 - AMB_RS22060 0.58 +1.7
4,763,969 - AMB_RS22060 0.58 +1.3
4,764,043 + AMB_RS22060 0.78 +0.0
4,764,159 - -0.3
4,764,159 - +0.0
4,764,253 + -1.0
4,764,285 - +0.4
4,764,337 + +0.9
4,764,338 - +0.0
4,764,341 + +4.7
4,764,344 + +0.0
4,764,362 + +1.0
4,764,363 - +1.1
4,764,452 + -0.4
4,764,465 + +1.7
4,764,538 + -1.0
4,764,538 + +0.8
4,764,538 + +1.6
4,764,538 + +0.4
4,764,538 + -0.1
4,764,538 + +0.5
4,764,543 + +1.0
4,764,543 + -0.2
4,764,544 - +0.6
4,765,005 + AMB_RS22065 0.41 +1.4
4,765,005 + AMB_RS22065 0.41 +1.6
4,765,005 + AMB_RS22065 0.41 +1.3
4,765,006 - AMB_RS22065 0.41 +1.3
4,765,006 - AMB_RS22065 0.41 +2.1
4,765,009 + AMB_RS22065 0.41 +0.2
4,765,009 + AMB_RS22065 0.41 +3.0
4,765,009 + AMB_RS22065 0.41 +1.2
4,765,009 + AMB_RS22065 0.41 +2.6
4,765,009 + AMB_RS22065 0.41 +0.5
4,765,009 + AMB_RS22065 0.41 +1.0
4,765,009 + AMB_RS22065 0.41 +0.3
4,765,009 + AMB_RS22065 0.41 +0.0
4,765,009 + AMB_RS22065 0.41 +2.2
4,765,009 + AMB_RS22065 0.41 -0.1
4,765,010 - AMB_RS22065 0.41 -0.6
4,765,010 - AMB_RS22065 0.41 +0.0
4,765,010 - AMB_RS22065 0.41 +0.7
4,765,010 - AMB_RS22065 0.41 +1.1
4,765,010 - AMB_RS22065 0.41 +1.2
4,765,010 - AMB_RS22065 0.41 +2.9
4,765,010 - AMB_RS22065 0.41 +1.7
4,765,010 - AMB_RS22065 0.41 +0.0
4,765,010 - AMB_RS22065 0.41 +0.8
4,765,010 - AMB_RS22065 0.41 +0.5
4,765,010 - AMB_RS22065 0.41 +0.9
4,765,010 - AMB_RS22065 0.41 +0.8
4,765,011 + AMB_RS22065 0.41 +1.4
4,765,011 + AMB_RS22065 0.41 +2.0
4,765,011 + AMB_RS22065 0.41 +0.1
4,765,011 + AMB_RS22065 0.41 +0.0
4,765,012 - AMB_RS22065 0.41 +1.2
4,765,012 - AMB_RS22065 0.41 -1.0

Or see this region's nucleotide sequence