Experiment: carbonsource_all
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21445 and AMB_RS21450 are separated by 13 nucleotides AMB_RS21450 and AMB_RS21455 are separated by 167 nucleotides
AMB_RS21445: AMB_RS21445 - acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha, at 4,648,695 to 4,650,686
_RS21445
AMB_RS21450: AMB_RS21450 - acyl-CoA carboxylase subunit beta, at 4,650,700 to 4,652,238
_RS21450
AMB_RS21455: AMB_RS21455 - XRE family transcriptional regulator, at 4,652,406 to 4,653,836
_RS21455
Position (kb) 4650
4651
4652
4653 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4649.814 kb on - strand, within AMB_RS21445 at 4649.814 kb on - strand, within AMB_RS21445 at 4649.831 kb on - strand, within AMB_RS21445 at 4649.831 kb on - strand, within AMB_RS21445 at 4649.885 kb on - strand, within AMB_RS21445 at 4649.885 kb on - strand, within AMB_RS21445 at 4649.885 kb on - strand, within AMB_RS21445 at 4649.885 kb on - strand, within AMB_RS21445 at 4649.885 kb on - strand, within AMB_RS21445 at 4650.020 kb on - strand, within AMB_RS21445 at 4650.020 kb on - strand, within AMB_RS21445 at 4650.020 kb on - strand, within AMB_RS21445 at 4650.020 kb on - strand, within AMB_RS21445 at 4650.020 kb on - strand, within AMB_RS21445 at 4650.593 kb on - strand at 4650.678 kb on - strand at 4650.702 kb on - strand at 4650.702 kb on - strand at 4650.790 kb on - strand at 4650.790 kb on - strand at 4651.029 kb on - strand, within AMB_RS21450 at 4651.029 kb on - strand, within AMB_RS21450 at 4651.029 kb on - strand, within AMB_RS21450 at 4651.077 kb on - strand, within AMB_RS21450 at 4651.083 kb on - strand, within AMB_RS21450 at 4651.083 kb on - strand, within AMB_RS21450 at 4651.083 kb on - strand, within AMB_RS21450 at 4651.083 kb on - strand, within AMB_RS21450 at 4651.119 kb on - strand, within AMB_RS21450 at 4651.392 kb on - strand, within AMB_RS21450 at 4651.668 kb on - strand, within AMB_RS21450 at 4651.668 kb on - strand, within AMB_RS21450 at 4651.668 kb on - strand, within AMB_RS21450 at 4651.668 kb on - strand, within AMB_RS21450 at 4651.695 kb on - strand, within AMB_RS21450 at 4651.695 kb on - strand, within AMB_RS21450 at 4651.695 kb on - strand, within AMB_RS21450 at 4651.695 kb on - strand, within AMB_RS21450 at 4651.695 kb on - strand, within AMB_RS21450 at 4651.695 kb on - strand, within AMB_RS21450 at 4651.716 kb on - strand, within AMB_RS21450 at 4651.716 kb on - strand, within AMB_RS21450 at 4651.716 kb on - strand, within AMB_RS21450 at 4651.716 kb on - strand, within AMB_RS21450 at 4651.949 kb on - strand, within AMB_RS21450 at 4652.125 kb on - strand at 4652.283 kb on - strand at 4652.283 kb on - strand at 4652.398 kb on + strand at 4652.400 kb on + strand at 4652.400 kb on + strand at 4652.400 kb on + strand at 4652.400 kb on + strand at 4652.400 kb on + strand at 4652.515 kb on - strand at 4652.515 kb on - strand at 4652.752 kb on - strand, within AMB_RS21455 at 4652.752 kb on - strand, within AMB_RS21455 at 4652.875 kb on - strand, within AMB_RS21455 at 4652.878 kb on - strand, within AMB_RS21455 at 4652.889 kb on + strand, within AMB_RS21455 at 4652.890 kb on - strand, within AMB_RS21455 at 4652.976 kb on + strand, within AMB_RS21455 at 4652.977 kb on - strand, within AMB_RS21455 at 4653.139 kb on - strand, within AMB_RS21455 at 4653.225 kb on + strand, within AMB_RS21455
Per-strain Table
Position Strand Gene LocusTag Fraction carbonsource_all remove 4,649,814 - AMB_RS21445 0.56 -0.6 4,649,814 - AMB_RS21445 0.56 -1.6 4,649,831 - AMB_RS21445 0.57 -2.2 4,649,831 - AMB_RS21445 0.57 +0.0 4,649,885 - AMB_RS21445 0.60 +0.4 4,649,885 - AMB_RS21445 0.60 +0.8 4,649,885 - AMB_RS21445 0.60 +0.0 4,649,885 - AMB_RS21445 0.60 +0.8 4,649,885 - AMB_RS21445 0.60 -2.3 4,650,020 - AMB_RS21445 0.67 -0.1 4,650,020 - AMB_RS21445 0.67 -1.0 4,650,020 - AMB_RS21445 0.67 +0.0 4,650,020 - AMB_RS21445 0.67 +0.7 4,650,020 - AMB_RS21445 0.67 -1.0 4,650,593 - -1.3 4,650,678 - -1.0 4,650,702 - +2.5 4,650,702 - +1.6 4,650,790 - +0.4 4,650,790 - +1.8 4,651,029 - AMB_RS21450 0.21 +1.9 4,651,029 - AMB_RS21450 0.21 +1.5 4,651,029 - AMB_RS21450 0.21 +1.3 4,651,077 - AMB_RS21450 0.24 +2.6 4,651,083 - AMB_RS21450 0.25 -2.8 4,651,083 - AMB_RS21450 0.25 +1.0 4,651,083 - AMB_RS21450 0.25 +2.6 4,651,083 - AMB_RS21450 0.25 +1.8 4,651,119 - AMB_RS21450 0.27 +1.6 4,651,392 - AMB_RS21450 0.45 -0.6 4,651,668 - AMB_RS21450 0.63 -2.6 4,651,668 - AMB_RS21450 0.63 -0.9 4,651,668 - AMB_RS21450 0.63 +0.0 4,651,668 - AMB_RS21450 0.63 -0.2 4,651,695 - AMB_RS21450 0.65 +1.7 4,651,695 - AMB_RS21450 0.65 -4.4 4,651,695 - AMB_RS21450 0.65 -0.1 4,651,695 - AMB_RS21450 0.65 +1.3 4,651,695 - AMB_RS21450 0.65 +1.0 4,651,695 - AMB_RS21450 0.65 +0.9 4,651,716 - AMB_RS21450 0.66 +3.0 4,651,716 - AMB_RS21450 0.66 -1.0 4,651,716 - AMB_RS21450 0.66 +0.0 4,651,716 - AMB_RS21450 0.66 +0.0 4,651,949 - AMB_RS21450 0.81 -3.4 4,652,125 - +1.1 4,652,283 - +1.3 4,652,283 - +3.3 4,652,398 + +2.0 4,652,400 + +0.8 4,652,400 + +1.5 4,652,400 + +3.1 4,652,400 + +1.2 4,652,400 + +1.1 4,652,515 - -1.4 4,652,515 - +0.2 4,652,752 - AMB_RS21455 0.24 -1.0 4,652,752 - AMB_RS21455 0.24 -1.0 4,652,875 - AMB_RS21455 0.33 -3.4 4,652,878 - AMB_RS21455 0.33 -2.3 4,652,889 + AMB_RS21455 0.34 -1.0 4,652,890 - AMB_RS21455 0.34 -2.0 4,652,976 + AMB_RS21455 0.40 +0.0 4,652,977 - AMB_RS21455 0.40 -1.0 4,653,139 - AMB_RS21455 0.51 +0.0 4,653,225 + AMB_RS21455 0.57 -1.6
Or see this region's nucleotide sequence