Experiment: carbonsource_all
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19210 and AMB_RS19215 are separated by 119 nucleotides AMB_RS19215 and AMB_RS19220 are separated by 1 nucleotides AMB_RS19220 and AMB_RS19225 overlap by 4 nucleotides AMB_RS19225 and AMB_RS19230 overlap by 4 nucleotides AMB_RS19230 and AMB_RS19235 overlap by 4 nucleotides
AMB_RS19210: AMB_RS19210 - hypothetical protein, at 4,192,471 to 4,192,677
_RS19210
AMB_RS19215: AMB_RS19215 - molybdenum cofactor biosynthesis protein MoaE, at 4,192,797 to 4,193,273
_RS19215
AMB_RS19220: AMB_RS19220 - molybdopterin converting factor subunit 1, at 4,193,275 to 4,193,526
_RS19220
AMB_RS19225: AMB_RS19225 - molybdopterin molybdenumtransferase MoeA, at 4,193,523 to 4,194,758
_RS19225
AMB_RS19230: AMB_RS19230 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 4,194,755 to 4,195,270
_RS19230
AMB_RS19235: AMB_RS19235 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 4,195,267 to 4,195,827
_RS19235
Position (kb) 4193
4194
4195 Strain fitness (log2 ratio) -1
0
1
2 at 4192.619 kb on + strand, within AMB_RS19210 at 4192.619 kb on + strand, within AMB_RS19210 at 4192.619 kb on + strand, within AMB_RS19210 at 4192.634 kb on + strand, within AMB_RS19210 at 4192.635 kb on - strand, within AMB_RS19210 at 4192.694 kb on - strand at 4192.737 kb on + strand at 4193.543 kb on - strand at 4193.543 kb on - strand at 4193.543 kb on - strand at 4194.126 kb on - strand, within AMB_RS19225 at 4194.396 kb on - strand, within AMB_RS19225 at 4194.865 kb on - strand, within AMB_RS19230 at 4194.865 kb on - strand, within AMB_RS19230 at 4195.027 kb on - strand, within AMB_RS19230 at 4195.045 kb on - strand, within AMB_RS19230 at 4195.045 kb on - strand, within AMB_RS19230 at 4195.117 kb on - strand, within AMB_RS19230 at 4195.288 kb on - strand at 4195.288 kb on - strand at 4195.288 kb on - strand at 4195.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbonsource_all remove 4,192,619 + AMB_RS19210 0.71 -1.1 4,192,619 + AMB_RS19210 0.71 -0.3 4,192,619 + AMB_RS19210 0.71 +0.5 4,192,634 + AMB_RS19210 0.79 +0.2 4,192,635 - AMB_RS19210 0.79 +0.3 4,192,694 - +0.8 4,192,737 + +0.8 4,193,543 - +0.8 4,193,543 - +2.0 4,193,543 - +1.1 4,194,126 - AMB_RS19225 0.49 -0.0 4,194,396 - AMB_RS19225 0.71 +2.3 4,194,865 - AMB_RS19230 0.21 +1.0 4,194,865 - AMB_RS19230 0.21 -0.3 4,195,027 - AMB_RS19230 0.53 +0.7 4,195,045 - AMB_RS19230 0.56 -0.4 4,195,045 - AMB_RS19230 0.56 +1.6 4,195,117 - AMB_RS19230 0.70 +0.6 4,195,288 - -0.3 4,195,288 - +0.6 4,195,288 - -1.6 4,195,288 - +0.6
Or see this region's nucleotide sequence