Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS13440

Experiment: carbonsource_all

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbonsource_all
2,860,863	+				-0.0
2,860,864	-				+1.0
2,860,864	-				+0.6
2,861,239	+		AMB_RS13430	0.43	-0.0
2,861,240	-		AMB_RS13430	0.43	-0.1
2,861,251	+		AMB_RS13430	0.45	+0.3
2,861,779	-				-0.5
2,861,797	-				+0.8
2,862,197	+		AMB_RS13440	0.13	-0.1
2,862,197	+		AMB_RS13440	0.13	+0.6
2,862,197	+		AMB_RS13440	0.13	+0.4
2,862,198	-		AMB_RS13440	0.13	+1.6
2,862,198	-		AMB_RS13440	0.13	-0.6
2,862,224	+		AMB_RS13440	0.14	-0.4
2,862,224	+		AMB_RS13440	0.14	+0.8
2,862,224	+		AMB_RS13440	0.14	+1.7
2,862,225	-		AMB_RS13440	0.14	+0.8
2,862,225	-		AMB_RS13440	0.14	+2.9
2,862,225	-		AMB_RS13440	0.14	+0.6
2,862,225	-		AMB_RS13440	0.14	+0.6
2,862,311	+		AMB_RS13440	0.17	+0.7
2,862,312	-		AMB_RS13440	0.17	-0.3
2,862,312	-		AMB_RS13440	0.17	+1.3
2,862,350	+		AMB_RS13440	0.19	-1.6
2,862,490	+		AMB_RS13440	0.23	+0.9
2,862,490	+		AMB_RS13440	0.23	-0.0
2,862,491	-		AMB_RS13440	0.23	+0.2
2,862,491	-		AMB_RS13440	0.23	+2.1
2,862,491	-		AMB_RS13440	0.23	+0.8
2,862,491	-		AMB_RS13440	0.23	-3.5
2,862,491	-		AMB_RS13440	0.23	+2.2
2,862,491	-		AMB_RS13440	0.23	+0.7
2,862,641	+		AMB_RS13440	0.29	-1.2
2,862,641	+		AMB_RS13440	0.29	+0.9
2,862,641	+		AMB_RS13440	0.29	-2.6
2,862,642	-		AMB_RS13440	0.29	-1.0
2,862,642	-		AMB_RS13440	0.29	+0.2
2,862,642	-		AMB_RS13440	0.29	+0.7
2,862,642	-		AMB_RS13440	0.29	-0.6
2,862,932	+		AMB_RS13440	0.39	-1.1
2,862,933	-		AMB_RS13440	0.39	-0.0
2,863,061	+		AMB_RS13440	0.43	+0.4
2,863,062	-		AMB_RS13440	0.43	-0.0
2,863,115	+		AMB_RS13440	0.45	-0.0
2,863,115	+		AMB_RS13440	0.45	-2.0
2,863,115	+		AMB_RS13440	0.45	+3.2
2,863,116	-		AMB_RS13440	0.45	+0.5
2,863,116	-		AMB_RS13440	0.45	-0.0
2,863,116	-		AMB_RS13440	0.45	+1.2
2,863,121	+		AMB_RS13440	0.45	+0.1
2,863,122	-		AMB_RS13440	0.45	+1.1
2,863,122	-		AMB_RS13440	0.45	+1.3
2,863,250	+		AMB_RS13440	0.50	+0.4
2,863,250	+		AMB_RS13440	0.50	+0.4
2,863,250	+		AMB_RS13440	0.50	-0.0
2,863,250	+		AMB_RS13440	0.50	-0.7
2,863,251	-		AMB_RS13440	0.50	+1.0
2,863,251	-		AMB_RS13440	0.50	-1.6
2,863,318	+		AMB_RS13440	0.52	-0.0
2,863,385	+		AMB_RS13440	0.54	+1.2
2,863,385	+		AMB_RS13440	0.54	+1.6
2,863,386	-		AMB_RS13440	0.54	-1.0
2,863,511	+		AMB_RS13440	0.59	+0.5
2,863,511	+		AMB_RS13440	0.59	+1.3
2,863,511	+		AMB_RS13440	0.59	-2.2
2,863,511	+		AMB_RS13440	0.59	+2.6
2,863,511	+		AMB_RS13440	0.59	-2.0
2,863,512	-		AMB_RS13440	0.59	-0.0
2,863,512	-		AMB_RS13440	0.59	-0.2
2,863,512	-		AMB_RS13440	0.59	+1.0
2,863,512	-		AMB_RS13440	0.59	-0.0
2,863,536	-		AMB_RS13440	0.60	+0.5
2,863,634	+		AMB_RS13440	0.63	+0.7
2,863,634	+		AMB_RS13440	0.63	-0.6
2,863,634	+		AMB_RS13440	0.63	-2.3
2,863,635	-		AMB_RS13440	0.63	-1.0
2,863,669	+		AMB_RS13440	0.64	+0.9
2,863,670	-		AMB_RS13440	0.64	+1.6
2,863,670	-		AMB_RS13440	0.64	+0.5
2,863,736	+		AMB_RS13440	0.67	-1.0
2,863,740	-		AMB_RS13440	0.67	+3.0
2,863,740	-		AMB_RS13440	0.67	+0.4
2,863,802	+		AMB_RS13440	0.69	-2.0
2,863,802	+		AMB_RS13440	0.69	+0.2
2,863,862	+		AMB_RS13440	0.71	+1.2
2,863,862	+		AMB_RS13440	0.71	-1.0
2,863,862	+		AMB_RS13440	0.71	+1.7
2,863,863	-		AMB_RS13440	0.71	-0.4
2,863,940	+		AMB_RS13440	0.74	-0.7
2,863,940	+		AMB_RS13440	0.74	+1.4
2,863,940	+		AMB_RS13440	0.74	-1.6
2,863,940	+		AMB_RS13440	0.74	+0.6
2,863,940	+		AMB_RS13440	0.74	-0.1
2,863,940	+		AMB_RS13440	0.74	+1.3
2,863,941	-		AMB_RS13440	0.74	+0.8
2,863,941	-		AMB_RS13440	0.74	+0.2
2,863,941	-		AMB_RS13440	0.74	-1.0
2,863,941	-		AMB_RS13440	0.74	-1.0
2,863,941	-		AMB_RS13440	0.74	-0.4
2,864,171	+		AMB_RS13440	0.82	+0.5
2,864,172	-		AMB_RS13440	0.82	+0.8
2,864,201	+		AMB_RS13440	0.83	-0.3
2,864,201	+		AMB_RS13440	0.83	+0.4
2,864,246	+		AMB_RS13440	0.84	+1.7
2,864,246	+		AMB_RS13440	0.84	-0.4
2,864,246	+		AMB_RS13440	0.84	+0.2
2,864,246	+		AMB_RS13440	0.84	-0.0
2,864,246	+		AMB_RS13440	0.84	+2.3
2,864,247	-		AMB_RS13440	0.84	+0.6
2,864,247	-		AMB_RS13440	0.84	+1.0
2,864,247	-		AMB_RS13440	0.84	-3.0
2,864,248	+		AMB_RS13440	0.84	-0.0
2,864,248	+		AMB_RS13440	0.84	+1.9
2,864,248	+		AMB_RS13440	0.84	-0.0
2,864,248	+		AMB_RS13440	0.84	-0.0
2,864,248	+		AMB_RS13440	0.84	-1.0
2,864,248	+		AMB_RS13440	0.84	+0.4
2,864,248	+		AMB_RS13440	0.84	+1.0
2,864,249	-		AMB_RS13440	0.84	+0.6
2,864,249	-		AMB_RS13440	0.84	+0.5
2,864,318	+		AMB_RS13440	0.87	-0.0
2,864,318	+		AMB_RS13440	0.87	-0.7
2,864,435	+				-1.0
2,864,570	+				+0.7
2,864,627	+				-0.8
2,864,627	+				+0.6
2,864,628	-				+3.7
2,864,633	+				+0.5
2,864,633	+				-1.0
2,864,633	+				-2.8
2,864,699	+				+1.3
2,864,699	+				-0.6
2,864,700	-				+0.8
2,864,932	+		AMB_RS13445	0.34	+0.7
2,864,932	+		AMB_RS13445	0.34	-0.3
2,864,933	-		AMB_RS13445	0.34	+3.2
2,864,933	-		AMB_RS13445	0.34	+1.8
2,864,990	-		AMB_RS13445	0.43	+1.4
2,864,998	+		AMB_RS13445	0.44	+0.4
2,864,998	+		AMB_RS13445	0.44	+0.6
2,864,998	+		AMB_RS13445	0.44	+0.9
2,865,128	-		AMB_RS13445	0.65	-1.0
2,865,229	+		AMB_RS13445	0.81	+1.3
2,865,230	-		AMB_RS13445	0.81	+1.5
2,865,230	-		AMB_RS13445	0.81	+1.5
2,865,289	+				+0.2
2,865,289	+				-1.0
2,865,289	+				-0.5
2,865,289	+				+1.1
2,865,290	-				-0.0
2,865,349	+				-2.0
2,865,349	+				+0.9
2,865,349	+				+2.3
2,865,350	-				+1.7
2,865,350	-				+0.8
2,865,456	+		AMB_RS13450	0.39	+0.9
2,865,456	+		AMB_RS13450	0.39	+2.4
2,865,457	-		AMB_RS13450	0.39	+1.6
2,865,457	-		AMB_RS13450	0.39	-0.0
2,865,457	-		AMB_RS13450	0.39	+1.6
2,865,457	-		AMB_RS13450	0.39	-0.0
2,865,554	+		AMB_RS13450	0.76	+1.1
2,865,615	+				+1.2