Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07720

Experiment: carbonsource_all

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07705 and AMB_RS07710 are separated by 123 nucleotidesAMB_RS07710 and AMB_RS07715 are separated by 15 nucleotidesAMB_RS07715 and AMB_RS07720 overlap by 23 nucleotidesAMB_RS07720 and AMB_RS07725 are separated by 78 nucleotidesAMB_RS07725 and AMB_RS07730 overlap by 10 nucleotides AMB_RS07705: AMB_RS07705 - tRNA-Thr, at 1,657,719 to 1,657,794 _RS07705 AMB_RS07710: AMB_RS07710 - hypothetical protein, at 1,657,918 to 1,658,124 _RS07710 AMB_RS07715: AMB_RS07715 - deoxycytidine triphosphate deaminase, at 1,658,140 to 1,658,694 _RS07715 AMB_RS07720: AMB_RS07720 - hypothetical protein, at 1,658,672 to 1,660,207 _RS07720 AMB_RS07725: AMB_RS07725 - universal stress protein UspA, at 1,660,286 to 1,661,152 _RS07725 AMB_RS07730: AMB_RS07730 - NUDIX hydrolase, at 1,661,143 to 1,661,859 _RS07730 Position (kb) 1658 1659 1660 1661Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1657.838 kb on - strandat 1658.105 kb on + strandat 1658.106 kb on - strandat 1658.239 kb on + strand, within AMB_RS07715at 1658.240 kb on - strand, within AMB_RS07715at 1658.254 kb on + strand, within AMB_RS07715at 1658.254 kb on + strand, within AMB_RS07715at 1658.255 kb on - strand, within AMB_RS07715at 1658.261 kb on - strand, within AMB_RS07715at 1658.261 kb on - strand, within AMB_RS07715at 1658.368 kb on - strand, within AMB_RS07715at 1658.368 kb on - strand, within AMB_RS07715at 1658.416 kb on + strand, within AMB_RS07715at 1658.467 kb on + strand, within AMB_RS07715at 1658.467 kb on + strand, within AMB_RS07715at 1658.467 kb on + strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.468 kb on - strand, within AMB_RS07715at 1658.573 kb on - strand, within AMB_RS07715at 1658.573 kb on - strand, within AMB_RS07715at 1658.635 kb on + strand, within AMB_RS07715at 1658.635 kb on + strand, within AMB_RS07715at 1658.635 kb on + strand, within AMB_RS07715at 1658.636 kb on - strand, within AMB_RS07715at 1658.656 kb on + strandat 1658.656 kb on + strandat 1658.656 kb on + strandat 1658.657 kb on - strandat 1658.657 kb on - strandat 1658.657 kb on - strandat 1658.770 kb on + strandat 1658.770 kb on + strandat 1658.770 kb on + strandat 1658.771 kb on - strandat 1658.918 kb on + strand, within AMB_RS07720at 1658.918 kb on + strand, within AMB_RS07720at 1658.918 kb on + strand, within AMB_RS07720at 1658.919 kb on - strand, within AMB_RS07720at 1658.919 kb on - strand, within AMB_RS07720at 1658.919 kb on - strand, within AMB_RS07720at 1659.414 kb on + strand, within AMB_RS07720at 1659.414 kb on + strand, within AMB_RS07720at 1659.414 kb on + strand, within AMB_RS07720at 1659.414 kb on + strand, within AMB_RS07720at 1659.414 kb on + strand, within AMB_RS07720at 1659.415 kb on - strand, within AMB_RS07720at 1659.415 kb on - strand, within AMB_RS07720at 1659.419 kb on + strand, within AMB_RS07720at 1659.419 kb on + strand, within AMB_RS07720at 1659.419 kb on + strand, within AMB_RS07720at 1659.419 kb on + strand, within AMB_RS07720at 1659.420 kb on - strand, within AMB_RS07720at 1659.420 kb on - strand, within AMB_RS07720at 1659.494 kb on + strand, within AMB_RS07720at 1659.495 kb on - strand, within AMB_RS07720at 1659.495 kb on - strand, within AMB_RS07720at 1659.495 kb on - strand, within AMB_RS07720at 1659.542 kb on + strand, within AMB_RS07720at 1659.542 kb on + strand, within AMB_RS07720at 1659.543 kb on - strand, within AMB_RS07720at 1659.543 kb on - strand, within AMB_RS07720at 1659.543 kb on - strand, within AMB_RS07720at 1659.645 kb on - strand, within AMB_RS07720at 1659.645 kb on - strand, within AMB_RS07720at 1659.645 kb on - strand, within AMB_RS07720at 1659.665 kb on + strand, within AMB_RS07720at 1659.875 kb on + strand, within AMB_RS07720at 1659.875 kb on + strand, within AMB_RS07720at 1659.875 kb on + strand, within AMB_RS07720at 1659.875 kb on + strand, within AMB_RS07720at 1659.876 kb on - strand, within AMB_RS07720at 1659.876 kb on - strand, within AMB_RS07720at 1659.876 kb on - strand, within AMB_RS07720at 1659.887 kb on + strand, within AMB_RS07720at 1659.888 kb on - strand, within AMB_RS07720at 1659.888 kb on - strand, within AMB_RS07720at 1660.115 kb on + strandat 1660.115 kb on + strandat 1660.115 kb on + strandat 1660.115 kb on + strandat 1660.116 kb on - strandat 1660.203 kb on + strandat 1660.204 kb on - strandat 1660.253 kb on + strandat 1660.253 kb on + strandat 1660.253 kb on + strandat 1660.254 kb on - strandat 1660.254 kb on - strandat 1660.254 kb on - strandat 1660.254 kb on - strandat 1660.254 kb on - strandat 1660.256 kb on + strandat 1660.256 kb on + strandat 1660.256 kb on + strandat 1660.257 kb on - strandat 1660.257 kb on - strandat 1660.937 kb on + strand, within AMB_RS07725at 1660.937 kb on + strand, within AMB_RS07725at 1660.937 kb on + strand, within AMB_RS07725at 1660.938 kb on - strand, within AMB_RS07725at 1660.938 kb on - strand, within AMB_RS07725at 1660.938 kb on - strand, within AMB_RS07725at 1660.938 kb on - strand, within AMB_RS07725at 1660.938 kb on - strand, within AMB_RS07725at 1660.938 kb on - strand, within AMB_RS07725at 1660.938 kb on - strand, within AMB_RS07725at 1661.060 kb on + strand, within AMB_RS07725at 1661.060 kb on + strand, within AMB_RS07725at 1661.060 kb on + strand, within AMB_RS07725at 1661.060 kb on + strand, within AMB_RS07725at 1661.061 kb on - strand, within AMB_RS07725at 1661.061 kb on - strand, within AMB_RS07725at 1661.061 kb on - strand, within AMB_RS07725at 1661.062 kb on + strand, within AMB_RS07725

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_all
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1,657,838 - +0.0
1,658,105 + +0.6
1,658,106 - +1.2
1,658,239 + AMB_RS07715 0.18 -0.3
1,658,240 - AMB_RS07715 0.18 +1.4
1,658,254 + AMB_RS07715 0.21 -0.7
1,658,254 + AMB_RS07715 0.21 +1.3
1,658,255 - AMB_RS07715 0.21 +1.6
1,658,261 - AMB_RS07715 0.22 +0.0
1,658,261 - AMB_RS07715 0.22 +1.0
1,658,368 - AMB_RS07715 0.41 +2.0
1,658,368 - AMB_RS07715 0.41 +0.2
1,658,416 + AMB_RS07715 0.50 +0.3
1,658,467 + AMB_RS07715 0.59 +0.8
1,658,467 + AMB_RS07715 0.59 -0.4
1,658,467 + AMB_RS07715 0.59 -1.0
1,658,468 - AMB_RS07715 0.59 +0.2
1,658,468 - AMB_RS07715 0.59 +2.0
1,658,468 - AMB_RS07715 0.59 +0.8
1,658,468 - AMB_RS07715 0.59 +2.0
1,658,468 - AMB_RS07715 0.59 +1.3
1,658,468 - AMB_RS07715 0.59 +0.8
1,658,468 - AMB_RS07715 0.59 +1.2
1,658,573 - AMB_RS07715 0.78 -2.0
1,658,573 - AMB_RS07715 0.78 +0.5
1,658,635 + AMB_RS07715 0.89 -1.0
1,658,635 + AMB_RS07715 0.89 +0.8
1,658,635 + AMB_RS07715 0.89 +0.7
1,658,636 - AMB_RS07715 0.89 +2.6
1,658,656 + +0.0
1,658,656 + -2.0
1,658,656 + +0.8
1,658,657 - +0.3
1,658,657 - +2.1
1,658,657 - -1.6
1,658,770 + +0.0
1,658,770 + +1.0
1,658,770 + +0.4
1,658,771 - +3.0
1,658,918 + AMB_RS07720 0.16 +1.0
1,658,918 + AMB_RS07720 0.16 +1.4
1,658,918 + AMB_RS07720 0.16 +0.7
1,658,919 - AMB_RS07720 0.16 +1.2
1,658,919 - AMB_RS07720 0.16 +0.0
1,658,919 - AMB_RS07720 0.16 +0.6
1,659,414 + AMB_RS07720 0.48 -0.2
1,659,414 + AMB_RS07720 0.48 +0.0
1,659,414 + AMB_RS07720 0.48 +1.6
1,659,414 + AMB_RS07720 0.48 +0.9
1,659,414 + AMB_RS07720 0.48 +1.0
1,659,415 - AMB_RS07720 0.48 +2.2
1,659,415 - AMB_RS07720 0.48 +3.2
1,659,419 + AMB_RS07720 0.49 +0.9
1,659,419 + AMB_RS07720 0.49 +0.5
1,659,419 + AMB_RS07720 0.49 +0.9
1,659,419 + AMB_RS07720 0.49 +3.3
1,659,420 - AMB_RS07720 0.49 +0.6
1,659,420 - AMB_RS07720 0.49 +0.3
1,659,494 + AMB_RS07720 0.54 +3.6
1,659,495 - AMB_RS07720 0.54 +0.0
1,659,495 - AMB_RS07720 0.54 -0.3
1,659,495 - AMB_RS07720 0.54 +0.6
1,659,542 + AMB_RS07720 0.57 -0.6
1,659,542 + AMB_RS07720 0.57 +1.3
1,659,543 - AMB_RS07720 0.57 -0.2
1,659,543 - AMB_RS07720 0.57 -0.8
1,659,543 - AMB_RS07720 0.57 +0.0
1,659,645 - AMB_RS07720 0.63 +2.0
1,659,645 - AMB_RS07720 0.63 +0.5
1,659,645 - AMB_RS07720 0.63 +0.9
1,659,665 + AMB_RS07720 0.65 +2.6
1,659,875 + AMB_RS07720 0.78 +0.8
1,659,875 + AMB_RS07720 0.78 +0.4
1,659,875 + AMB_RS07720 0.78 +1.0
1,659,875 + AMB_RS07720 0.78 -0.6
1,659,876 - AMB_RS07720 0.78 +1.1
1,659,876 - AMB_RS07720 0.78 +0.0
1,659,876 - AMB_RS07720 0.78 +1.0
1,659,887 + AMB_RS07720 0.79 +0.8
1,659,888 - AMB_RS07720 0.79 +0.0
1,659,888 - AMB_RS07720 0.79 +1.3
1,660,115 + +1.0
1,660,115 + +1.9
1,660,115 + -0.6
1,660,115 + -0.4
1,660,116 - +0.0
1,660,203 + -1.0
1,660,204 - +0.5
1,660,253 + +1.0
1,660,253 + -0.1
1,660,253 + +1.1
1,660,254 - -0.0
1,660,254 - +0.9
1,660,254 - -3.6
1,660,254 - +0.5
1,660,254 - +0.5
1,660,256 + +1.1
1,660,256 + +0.3
1,660,256 + +0.3
1,660,257 - -0.3
1,660,257 - +0.6
1,660,937 + AMB_RS07725 0.75 +1.8
1,660,937 + AMB_RS07725 0.75 +1.6
1,660,937 + AMB_RS07725 0.75 +0.2
1,660,938 - AMB_RS07725 0.75 +0.7
1,660,938 - AMB_RS07725 0.75 +0.2
1,660,938 - AMB_RS07725 0.75 +0.6
1,660,938 - AMB_RS07725 0.75 -0.2
1,660,938 - AMB_RS07725 0.75 -1.2
1,660,938 - AMB_RS07725 0.75 +0.2
1,660,938 - AMB_RS07725 0.75 +0.7
1,661,060 + AMB_RS07725 0.89 +0.9
1,661,060 + AMB_RS07725 0.89 -1.0
1,661,060 + AMB_RS07725 0.89 +2.9
1,661,060 + AMB_RS07725 0.89 +2.6
1,661,061 - AMB_RS07725 0.89 +2.7
1,661,061 - AMB_RS07725 0.89 -0.3
1,661,061 - AMB_RS07725 0.89 +1.1
1,661,062 + AMB_RS07725 0.90 -0.1

Or see this region's nucleotide sequence