Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06550

Experiment: carbonsource_all

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS06540 and AMB_RS06545 are separated by 3 nucleotidesAMB_RS06545 and AMB_RS06550 are separated by 74 nucleotidesAMB_RS06550 and AMB_RS06555 are separated by 93 nucleotides AMB_RS06540: AMB_RS06540 - elongation factor P, at 1,405,527 to 1,406,093 _RS06540 AMB_RS06545: AMB_RS06545 - inositol monophosphatase, at 1,406,097 to 1,406,894 _RS06545 AMB_RS06550: AMB_RS06550 - lysophospholipase, at 1,406,969 to 1,408,231 _RS06550 AMB_RS06555: AMB_RS06555 - hypothetical protein, at 1,408,325 to 1,409,473 _RS06555 Position (kb) 1406 1407 1408 1409Strain fitness (log2 ratio) -2 -1 0 1at 1406.920 kb on + strandat 1406.921 kb on - strandat 1406.935 kb on - strandat 1406.941 kb on - strandat 1407.227 kb on + strand, within AMB_RS06550at 1407.227 kb on + strand, within AMB_RS06550at 1407.228 kb on - strand, within AMB_RS06550at 1408.121 kb on + strandat 1408.250 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_all
remove
1,406,920 + +0.5
1,406,921 - -1.3
1,406,935 - -0.2
1,406,941 - -0.4
1,407,227 + AMB_RS06550 0.20 -1.0
1,407,227 + AMB_RS06550 0.20 +0.3
1,407,228 - AMB_RS06550 0.21 +1.6
1,408,121 + -1.4
1,408,250 + -1.9

Or see this region's nucleotide sequence