Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04955

Experiment: carbonsource_all

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbonsource_all
1,027,325	+		AMB_RS04945	0.39	-1.6
1,027,333	+		AMB_RS04945	0.40	+0.2
1,027,333	+		AMB_RS04945	0.40	+0.8
1,027,334	-		AMB_RS04945	0.40	+0.5
1,027,334	-		AMB_RS04945	0.40	-0.0
1,027,421	+		AMB_RS04945	0.48	+0.6
1,027,421	+		AMB_RS04945	0.48	+1.7
1,027,422	-		AMB_RS04945	0.48	-0.0
1,027,422	-		AMB_RS04945	0.48	+2.1
1,027,422	-		AMB_RS04945	0.48	+1.0
1,027,422	-		AMB_RS04945	0.48	-2.0
1,027,466	+		AMB_RS04945	0.52	+1.8
1,027,488	+		AMB_RS04945	0.55	+2.3
1,027,488	+		AMB_RS04945	0.55	-1.1
1,027,488	+		AMB_RS04945	0.55	+2.7
1,027,488	+		AMB_RS04945	0.55	-0.5
1,027,488	+		AMB_RS04945	0.55	-1.2
1,027,488	+		AMB_RS04945	0.55	+1.3
1,027,488	+		AMB_RS04945	0.55	+2.2
1,027,488	+		AMB_RS04945	0.55	+1.5
1,027,488	+		AMB_RS04945	0.55	+1.2
1,027,488	+		AMB_RS04945	0.55	-0.4
1,027,488	+		AMB_RS04945	0.55	+1.1
1,027,488	+		AMB_RS04945	0.55	-0.6
1,027,488	+		AMB_RS04945	0.55	-1.0
1,027,488	+		AMB_RS04945	0.55	+0.7
1,027,488	+		AMB_RS04945	0.55	+2.1
1,027,488	+		AMB_RS04945	0.55	+0.7
1,027,488	+		AMB_RS04945	0.55	+0.7
1,027,488	+		AMB_RS04945	0.55	+0.4
1,027,488	+		AMB_RS04945	0.55	+0.7
1,027,488	+		AMB_RS04945	0.55	+1.2
1,027,489	-		AMB_RS04945	0.55	+1.2
1,027,489	-		AMB_RS04945	0.55	+1.0
1,027,489	-		AMB_RS04945	0.55	+0.2
1,027,489	-		AMB_RS04945	0.55	+1.2
1,027,489	-		AMB_RS04945	0.55	+1.4
1,027,489	-		AMB_RS04945	0.55	-1.0
1,027,489	-		AMB_RS04945	0.55	-2.5
1,027,489	-		AMB_RS04945	0.55	+1.1
1,027,489	-		AMB_RS04945	0.55	-0.0
1,027,489	-		AMB_RS04945	0.55	+1.3
1,027,489	-		AMB_RS04945	0.55	+0.8
1,027,489	-		AMB_RS04945	0.55	+1.0
1,027,489	-		AMB_RS04945	0.55	+1.7
1,027,489	-		AMB_RS04945	0.55	+1.1
1,027,489	-		AMB_RS04945	0.55	+1.2
1,027,489	-		AMB_RS04945	0.55	+0.1
1,027,489	-		AMB_RS04945	0.55	-2.6
1,027,489	-		AMB_RS04945	0.55	+0.4
1,027,489	-		AMB_RS04945	0.55	+1.2
1,027,489	-		AMB_RS04945	0.55	+2.6
1,027,489	-		AMB_RS04945	0.55	-0.0
1,027,489	-		AMB_RS04945	0.55	+1.9
1,027,489	-		AMB_RS04945	0.55	-3.3
1,027,489	-		AMB_RS04945	0.55	+0.9
1,027,489	-		AMB_RS04945	0.55	+1.9
1,027,489	-		AMB_RS04945	0.55	-2.6
1,027,700	+		AMB_RS04945	0.75	+0.9
1,027,744	-		AMB_RS04945	0.79	-1.6
1,027,813	-		AMB_RS04945	0.86	+1.8
1,027,813	-		AMB_RS04945	0.86	+1.7
1,027,813	-		AMB_RS04945	0.86	+1.0
1,027,813	-		AMB_RS04945	0.86	+0.7
1,027,813	-		AMB_RS04945	0.86	-2.0
1,027,813	-		AMB_RS04945	0.86	+0.3
1,027,926	+				+0.4
1,027,926	+				-0.0
1,027,926	+				-2.3
1,027,927	-				+1.1
1,027,978	+				+0.7
1,027,993	+				+1.5
1,028,005	+				-1.0
1,028,005	+				+1.4
1,028,005	+				+2.0
1,028,006	-				-2.3
1,028,006	-				-3.5
1,028,006	-				-0.4
1,028,021	+				+1.2
1,028,021	+				+0.9
1,028,021	+				+1.1
1,028,021	+				-0.1
1,028,021	+				+0.6
1,028,021	+				+0.9
1,028,021	+				+1.4
1,028,022	-				+0.8
1,028,022	-				+1.0
1,028,022	-				+0.8
1,028,022	-				+1.1
1,028,022	-				+0.2
1,028,022	-				+1.9
1,028,022	-				+0.9
1,028,022	-				+0.9
1,028,085	+		AMB_RS04950	0.29	-0.0
1,028,085	+		AMB_RS04950	0.29	-1.6
1,028,085	+		AMB_RS04950	0.29	-0.1
1,028,085	+		AMB_RS04950	0.29	+0.4
1,028,086	-		AMB_RS04950	0.29	-0.0
1,028,086	-		AMB_RS04950	0.29	+0.2
1,028,086	-		AMB_RS04950	0.29	+0.6
1,028,086	-		AMB_RS04950	0.29	+0.6
1,028,086	-		AMB_RS04950	0.29	+0.4
1,028,086	-		AMB_RS04950	0.29	+2.5
1,028,086	-		AMB_RS04950	0.29	-1.0
1,028,086	-		AMB_RS04950	0.29	+0.9
1,028,147	+		AMB_RS04950	0.55	+1.0
1,028,147	+		AMB_RS04950	0.55	+1.6
1,028,148	-		AMB_RS04950	0.55	+0.3
1,028,148	-		AMB_RS04950	0.55	+2.2
1,028,299	+				-0.0
1,028,299	+				+0.7
1,028,299	+				+0.1
1,028,299	+				-2.3
1,028,299	+				+0.9
1,028,299	+				+2.3
1,028,299	+				-0.0
1,028,299	+				+1.0
1,028,299	+				+0.4
1,028,300	-				-0.2
1,028,300	-				+0.4
1,028,300	-				+0.6
1,028,300	-				+1.1
1,028,300	-				+1.1
1,028,300	-				+1.2
1,028,362	+				+1.2
1,028,363	-				+0.7
1,028,363	-				+0.9
1,028,363	-				+1.0
1,028,363	-				+1.4
1,028,363	-				+1.2
1,028,363	-				+1.3
1,028,371	+				-0.1
1,028,371	+				+0.6
1,028,371	+				+1.2
1,028,372	-				+2.3
1,028,372	-				+1.7
1,028,372	-				+1.4
1,028,372	-				-1.0
1,028,372	-				-0.3
1,028,372	-				+0.7
1,028,439	+		AMB_RS04955	0.14	+1.9
1,028,439	+		AMB_RS04955	0.14	-0.0
1,028,439	+		AMB_RS04955	0.14	+0.3
1,028,439	+		AMB_RS04955	0.14	-4.1
1,028,439	+		AMB_RS04955	0.14	+0.5
1,028,439	+		AMB_RS04955	0.14	+1.1
1,028,439	+		AMB_RS04955	0.14	+1.7
1,028,439	+		AMB_RS04955	0.14	+1.7
1,028,439	+		AMB_RS04955	0.14	+1.6
1,028,439	+		AMB_RS04955	0.14	+1.4
1,028,439	+		AMB_RS04955	0.14	+0.5
1,028,439	+		AMB_RS04955	0.14	+2.4
1,028,439	+		AMB_RS04955	0.14	+1.0
1,028,439	+		AMB_RS04955	0.14	-0.0
1,028,440	-		AMB_RS04955	0.14	+1.0
1,028,440	-		AMB_RS04955	0.14	+1.0
1,028,440	-		AMB_RS04955	0.14	+0.9
1,028,440	-		AMB_RS04955	0.14	+1.2
1,028,440	-		AMB_RS04955	0.14	+1.7
1,028,440	-		AMB_RS04955	0.14	+0.0
1,028,440	-		AMB_RS04955	0.14	+1.8
1,028,440	-		AMB_RS04955	0.14	+0.7
1,028,592	+		AMB_RS04955	0.30	+1.2
1,028,592	+		AMB_RS04955	0.30	-0.0
1,028,593	-		AMB_RS04955	0.30	+1.0
1,028,593	-		AMB_RS04955	0.30	+0.8
1,028,703	+		AMB_RS04955	0.42	-0.0
1,028,703	+		AMB_RS04955	0.42	+1.2
1,028,703	+		AMB_RS04955	0.42	+0.9
1,028,703	+		AMB_RS04955	0.42	+0.8
1,028,703	+		AMB_RS04955	0.42	+0.8
1,028,703	+		AMB_RS04955	0.42	+1.7
1,028,703	+		AMB_RS04955	0.42	-0.0
1,028,703	+		AMB_RS04955	0.42	+3.0
1,028,703	+		AMB_RS04955	0.42	+1.2
1,028,703	+		AMB_RS04955	0.42	+3.2
1,028,703	+		AMB_RS04955	0.42	+1.3
1,028,703	+		AMB_RS04955	0.42	+0.6
1,028,703	+		AMB_RS04955	0.42	+1.2
1,028,703	+		AMB_RS04955	0.42	+0.8
1,028,703	+		AMB_RS04955	0.42	+1.5
1,028,703	+		AMB_RS04955	0.42	+0.7
1,028,703	+		AMB_RS04955	0.42	+0.9
1,028,703	+		AMB_RS04955	0.42	+1.3
1,028,703	+		AMB_RS04955	0.42	+1.0
1,028,703	+		AMB_RS04955	0.42	+1.4
1,028,704	-		AMB_RS04955	0.42	+1.1
1,028,704	-		AMB_RS04955	0.42	-2.0
1,028,704	-		AMB_RS04955	0.42	+0.9
1,028,704	-		AMB_RS04955	0.42	+1.7
1,028,704	-		AMB_RS04955	0.42	+1.2
1,028,704	-		AMB_RS04955	0.42	+1.1
1,028,704	-		AMB_RS04955	0.42	+0.2
1,028,704	-		AMB_RS04955	0.42	+0.4
1,028,704	-		AMB_RS04955	0.42	+0.8
1,028,704	-		AMB_RS04955	0.42	+1.4
1,028,704	-		AMB_RS04955	0.42	+1.1
1,028,704	-		AMB_RS04955	0.42	-0.8
1,028,704	-		AMB_RS04955	0.42	+0.9
1,028,704	-		AMB_RS04955	0.42	-1.0
1,028,704	-		AMB_RS04955	0.42	+1.4
1,028,704	-		AMB_RS04955	0.42	+0.4
1,028,704	-		AMB_RS04955	0.42	+1.4
1,028,704	-		AMB_RS04955	0.42	+0.7
1,028,704	-		AMB_RS04955	0.42	-0.8
1,028,704	-		AMB_RS04955	0.42	-0.0
1,028,709	+		AMB_RS04955	0.42	+0.8
1,028,710	-		AMB_RS04955	0.42	+1.4
1,028,710	-		AMB_RS04955	0.42	+0.7
1,028,826	+		AMB_RS04955	0.55	+0.1
1,028,826	+		AMB_RS04955	0.55	+0.9
1,028,826	+		AMB_RS04955	0.55	-1.0
1,028,826	+		AMB_RS04955	0.55	+0.6
1,028,826	+		AMB_RS04955	0.55	+1.9
1,028,826	+		AMB_RS04955	0.55	-1.8
1,028,827	-		AMB_RS04955	0.55	+0.9
1,028,827	-		AMB_RS04955	0.55	+0.0
1,028,827	-		AMB_RS04955	0.55	+1.0
1,028,916	+		AMB_RS04955	0.64	+1.4
1,028,916	+		AMB_RS04955	0.64	+2.6
1,028,917	-		AMB_RS04955	0.64	+1.7
1,028,937	-		AMB_RS04955	0.66	+0.5
1,029,025	-		AMB_RS04955	0.75	-0.0
1,029,025	-		AMB_RS04955	0.75	-0.1
1,029,077	+		AMB_RS04955	0.81	+1.6
1,029,078	-		AMB_RS04955	0.81	+1.0
1,029,078	-		AMB_RS04955	0.81	-0.4
1,029,078	-		AMB_RS04955	0.81	+1.0
1,029,078	-		AMB_RS04955	0.81	+2.5
1,029,078	-		AMB_RS04955	0.81	-0.1
1,029,078	-		AMB_RS04955	0.81	+0.0
1,029,078	-		AMB_RS04955	0.81	+2.8
1,029,188	+				-1.6
1,029,189	-				+0.5
1,029,225	+				+0.3
1,029,225	+				+1.5
1,029,226	-				-1.6
1,029,226	-				-0.0
1,029,254	+				+0.8
1,029,255	-				+1.3
1,029,258	+				+0.9
1,029,258	+				+0.7
1,029,258	+				-0.0
1,029,258	+				+0.7
1,029,259	-				+0.8
1,029,259	-				+0.7
1,029,259	-				+1.3
1,029,259	-				+0.5
1,029,259	-				+1.4
1,029,259	-				-1.0
1,029,312	+				-2.0
1,029,312	+				+0.6
1,029,312	+				+2.8
1,029,312	+				+1.0
1,029,312	+				+2.5
1,029,393	+		AMB_RS04960	0.10	+1.2
1,029,393	+		AMB_RS04960	0.10	+1.5
1,029,393	+		AMB_RS04960	0.10	+0.2
1,029,394	-		AMB_RS04960	0.10	-1.0
1,029,423	+		AMB_RS04960	0.12	+1.4
1,029,424	-		AMB_RS04960	0.12	+1.0
1,029,424	-		AMB_RS04960	0.12	+0.4
1,029,424	-		AMB_RS04960	0.12	-0.0
1,029,492	+		AMB_RS04960	0.18	+0.7
1,029,493	-		AMB_RS04960	0.18	+1.1
1,029,493	-		AMB_RS04960	0.18	+0.9
1,029,493	-		AMB_RS04960	0.18	-0.8
1,029,498	+		AMB_RS04960	0.18	+0.6
1,029,498	+		AMB_RS04960	0.18	+1.1
1,029,498	+		AMB_RS04960	0.18	+1.3
1,029,498	+		AMB_RS04960	0.18	+0.7
1,029,499	-		AMB_RS04960	0.18	+0.4
1,029,499	-		AMB_RS04960	0.18	+0.9
1,029,573	+		AMB_RS04960	0.24	+1.9
1,029,573	+		AMB_RS04960	0.24	+0.6
1,029,573	+		AMB_RS04960	0.24	+0.4
1,029,832	+		AMB_RS04960	0.43	+1.2
1,029,832	+		AMB_RS04960	0.43	+1.3
1,029,833	-		AMB_RS04960	0.44	-2.6
1,029,946	-		AMB_RS04960	0.52	+1.1
1,029,946	-		AMB_RS04960	0.52	-1.3
1,029,946	-		AMB_RS04960	0.52	-0.5
1,030,114	-		AMB_RS04960	0.65	+0.9
1,030,114	-		AMB_RS04960	0.65	+0.6