Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04310

Experiment: carbonsource_all

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04305 and AMB_RS04310 are separated by 12 nucleotidesAMB_RS04310 and AMB_RS04315 are separated by 48 nucleotides AMB_RS04305: AMB_RS04305 - HD domain-containing protein, at 903,990 to 905,198 _RS04305 AMB_RS04310: AMB_RS04310 - receptor protein, at 905,211 to 907,154 _RS04310 AMB_RS04315: AMB_RS04315 - PAS domain S-box protein, at 907,203 to 909,743 _RS04315 Position (kb) 905 906 907 908Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 904.343 kb on + strand, within AMB_RS04305at 904.343 kb on + strand, within AMB_RS04305at 904.344 kb on - strand, within AMB_RS04305at 904.392 kb on + strand, within AMB_RS04305at 904.392 kb on + strand, within AMB_RS04305at 904.392 kb on + strand, within AMB_RS04305at 904.392 kb on + strand, within AMB_RS04305at 904.393 kb on - strand, within AMB_RS04305at 904.393 kb on - strand, within AMB_RS04305at 904.393 kb on - strand, within AMB_RS04305at 904.393 kb on - strand, within AMB_RS04305at 904.584 kb on + strand, within AMB_RS04305at 904.584 kb on + strand, within AMB_RS04305at 904.680 kb on + strand, within AMB_RS04305at 904.680 kb on + strand, within AMB_RS04305at 904.680 kb on + strand, within AMB_RS04305at 904.680 kb on + strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.687 kb on - strand, within AMB_RS04305at 904.687 kb on - strand, within AMB_RS04305at 904.872 kb on - strand, within AMB_RS04305at 904.872 kb on - strand, within AMB_RS04305at 904.896 kb on + strand, within AMB_RS04305at 904.896 kb on + strand, within AMB_RS04305at 904.978 kb on - strand, within AMB_RS04305at 905.040 kb on - strand, within AMB_RS04305at 905.070 kb on + strand, within AMB_RS04305at 905.071 kb on - strand, within AMB_RS04305at 905.308 kb on + strandat 905.308 kb on + strandat 905.308 kb on + strandat 905.309 kb on - strandat 905.443 kb on + strand, within AMB_RS04310at 905.443 kb on + strand, within AMB_RS04310at 905.443 kb on + strand, within AMB_RS04310at 905.443 kb on + strand, within AMB_RS04310at 905.444 kb on - strand, within AMB_RS04310at 905.444 kb on - strand, within AMB_RS04310at 905.677 kb on + strand, within AMB_RS04310at 905.678 kb on - strand, within AMB_RS04310at 905.696 kb on - strand, within AMB_RS04310at 905.696 kb on - strand, within AMB_RS04310at 905.779 kb on + strand, within AMB_RS04310at 905.780 kb on - strand, within AMB_RS04310at 905.944 kb on + strand, within AMB_RS04310at 905.944 kb on + strand, within AMB_RS04310at 905.944 kb on + strand, within AMB_RS04310at 906.091 kb on + strand, within AMB_RS04310at 906.092 kb on - strand, within AMB_RS04310at 906.092 kb on - strand, within AMB_RS04310at 906.317 kb on - strand, within AMB_RS04310at 906.340 kb on + strand, within AMB_RS04310at 906.341 kb on - strand, within AMB_RS04310at 906.372 kb on - strand, within AMB_RS04310at 906.440 kb on - strand, within AMB_RS04310at 906.440 kb on - strand, within AMB_RS04310at 906.490 kb on + strand, within AMB_RS04310at 906.490 kb on + strand, within AMB_RS04310at 906.490 kb on + strand, within AMB_RS04310at 906.490 kb on + strand, within AMB_RS04310at 906.490 kb on + strand, within AMB_RS04310at 906.491 kb on - strand, within AMB_RS04310at 906.491 kb on - strand, within AMB_RS04310at 906.491 kb on - strand, within AMB_RS04310at 906.491 kb on - strand, within AMB_RS04310at 906.508 kb on - strand, within AMB_RS04310at 906.508 kb on - strand, within AMB_RS04310at 906.607 kb on + strand, within AMB_RS04310at 906.715 kb on + strand, within AMB_RS04310at 906.721 kb on + strand, within AMB_RS04310at 906.722 kb on - strand, within AMB_RS04310at 906.752 kb on - strand, within AMB_RS04310at 907.013 kb on + strandat 907.014 kb on - strandat 907.014 kb on - strandat 907.015 kb on + strandat 907.015 kb on + strandat 907.015 kb on + strandat 907.015 kb on + strandat 907.016 kb on - strandat 907.016 kb on - strandat 907.016 kb on - strandat 907.016 kb on - strandat 907.016 kb on - strandat 907.161 kb on + strandat 907.162 kb on - strandat 907.167 kb on + strandat 907.167 kb on + strandat 907.167 kb on + strandat 907.168 kb on - strandat 907.509 kb on + strand, within AMB_RS04315at 907.617 kb on + strand, within AMB_RS04315at 907.617 kb on + strand, within AMB_RS04315at 907.617 kb on + strand, within AMB_RS04315at 907.618 kb on - strand, within AMB_RS04315at 907.618 kb on - strand, within AMB_RS04315at 907.618 kb on - strand, within AMB_RS04315at 907.749 kb on + strand, within AMB_RS04315at 907.749 kb on + strand, within AMB_RS04315at 907.779 kb on - strand, within AMB_RS04315at 907.779 kb on - strand, within AMB_RS04315at 907.899 kb on + strand, within AMB_RS04315at 907.923 kb on + strand, within AMB_RS04315at 907.923 kb on + strand, within AMB_RS04315at 907.923 kb on + strand, within AMB_RS04315at 907.923 kb on + strand, within AMB_RS04315at 907.924 kb on - strand, within AMB_RS04315at 907.924 kb on - strand, within AMB_RS04315at 907.924 kb on - strand, within AMB_RS04315at 907.924 kb on - strand, within AMB_RS04315at 907.924 kb on - strand, within AMB_RS04315at 908.128 kb on + strand, within AMB_RS04315at 908.128 kb on + strand, within AMB_RS04315at 908.129 kb on - strand, within AMB_RS04315at 908.129 kb on - strand, within AMB_RS04315at 908.130 kb on + strand, within AMB_RS04315at 908.130 kb on + strand, within AMB_RS04315at 908.130 kb on + strand, within AMB_RS04315at 908.130 kb on + strand, within AMB_RS04315at 908.130 kb on + strand, within AMB_RS04315at 908.130 kb on + strand, within AMB_RS04315at 908.130 kb on + strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_all
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904,343 + AMB_RS04305 0.29 +0.7
904,343 + AMB_RS04305 0.29 +1.6
904,344 - AMB_RS04305 0.29 -0.3
904,392 + AMB_RS04305 0.33 +1.1
904,392 + AMB_RS04305 0.33 +0.7
904,392 + AMB_RS04305 0.33 -1.0
904,392 + AMB_RS04305 0.33 +1.7
904,393 - AMB_RS04305 0.33 +0.0
904,393 - AMB_RS04305 0.33 -0.1
904,393 - AMB_RS04305 0.33 +0.7
904,393 - AMB_RS04305 0.33 -3.4
904,584 + AMB_RS04305 0.49 -1.9
904,584 + AMB_RS04305 0.49 -2.3
904,680 + AMB_RS04305 0.57 +0.7
904,680 + AMB_RS04305 0.57 +0.6
904,680 + AMB_RS04305 0.57 +1.3
904,680 + AMB_RS04305 0.57 +1.6
904,681 - AMB_RS04305 0.57 +0.4
904,681 - AMB_RS04305 0.57 +0.0
904,681 - AMB_RS04305 0.57 +1.5
904,681 - AMB_RS04305 0.57 +0.0
904,681 - AMB_RS04305 0.57 +1.9
904,681 - AMB_RS04305 0.57 +1.0
904,686 + AMB_RS04305 0.58 -2.8
904,686 + AMB_RS04305 0.58 +0.2
904,686 + AMB_RS04305 0.58 +1.7
904,686 + AMB_RS04305 0.58 -2.0
904,686 + AMB_RS04305 0.58 -0.1
904,686 + AMB_RS04305 0.58 +0.5
904,686 + AMB_RS04305 0.58 +0.0
904,686 + AMB_RS04305 0.58 +0.0
904,687 - AMB_RS04305 0.58 +0.8
904,687 - AMB_RS04305 0.58 +1.6
904,872 - AMB_RS04305 0.73 +0.9
904,872 - AMB_RS04305 0.73 -1.0
904,896 + AMB_RS04305 0.75 +0.3
904,896 + AMB_RS04305 0.75 -1.4
904,978 - AMB_RS04305 0.82 +0.8
905,040 - AMB_RS04305 0.87 +0.2
905,070 + AMB_RS04305 0.89 +1.3
905,071 - AMB_RS04305 0.89 -0.2
905,308 + +1.8
905,308 + +0.6
905,308 + +0.9
905,309 - -0.5
905,443 + AMB_RS04310 0.12 +1.0
905,443 + AMB_RS04310 0.12 +0.8
905,443 + AMB_RS04310 0.12 +3.2
905,443 + AMB_RS04310 0.12 +0.7
905,444 - AMB_RS04310 0.12 -1.0
905,444 - AMB_RS04310 0.12 +0.2
905,677 + AMB_RS04310 0.24 -0.6
905,678 - AMB_RS04310 0.24 +1.1
905,696 - AMB_RS04310 0.25 +0.3
905,696 - AMB_RS04310 0.25 +0.8
905,779 + AMB_RS04310 0.29 +3.8
905,780 - AMB_RS04310 0.29 -2.0
905,944 + AMB_RS04310 0.38 +1.0
905,944 + AMB_RS04310 0.38 +0.8
905,944 + AMB_RS04310 0.38 +2.2
906,091 + AMB_RS04310 0.45 -0.4
906,092 - AMB_RS04310 0.45 -1.0
906,092 - AMB_RS04310 0.45 -1.6
906,317 - AMB_RS04310 0.57 -1.6
906,340 + AMB_RS04310 0.58 +3.0
906,341 - AMB_RS04310 0.58 +1.5
906,372 - AMB_RS04310 0.60 +2.1
906,440 - AMB_RS04310 0.63 +0.8
906,440 - AMB_RS04310 0.63 +0.6
906,490 + AMB_RS04310 0.66 -2.3
906,490 + AMB_RS04310 0.66 +0.9
906,490 + AMB_RS04310 0.66 +1.7
906,490 + AMB_RS04310 0.66 +0.0
906,490 + AMB_RS04310 0.66 +0.6
906,491 - AMB_RS04310 0.66 +0.9
906,491 - AMB_RS04310 0.66 +0.6
906,491 - AMB_RS04310 0.66 +1.2
906,491 - AMB_RS04310 0.66 +0.6
906,508 - AMB_RS04310 0.67 +1.8
906,508 - AMB_RS04310 0.67 +1.0
906,607 + AMB_RS04310 0.72 +0.1
906,715 + AMB_RS04310 0.77 +1.2
906,721 + AMB_RS04310 0.78 +0.0
906,722 - AMB_RS04310 0.78 -1.6
906,752 - AMB_RS04310 0.79 +0.8
907,013 + +1.6
907,014 - +0.2
907,014 - +2.7
907,015 + +0.5
907,015 + +1.6
907,015 + +0.5
907,015 + +1.3
907,016 - +1.9
907,016 - +0.0
907,016 - +0.0
907,016 - +2.5
907,016 - +0.5
907,161 + +0.5
907,162 - +1.0
907,167 + +0.1
907,167 + -0.6
907,167 + +0.0
907,168 - +1.6
907,509 + AMB_RS04315 0.12 -3.0
907,617 + AMB_RS04315 0.16 +1.0
907,617 + AMB_RS04315 0.16 +0.6
907,617 + AMB_RS04315 0.16 -0.0
907,618 - AMB_RS04315 0.16 -0.5
907,618 - AMB_RS04315 0.16 +1.3
907,618 - AMB_RS04315 0.16 +0.3
907,749 + AMB_RS04315 0.21 +0.0
907,749 + AMB_RS04315 0.21 -0.2
907,779 - AMB_RS04315 0.23 +0.8
907,779 - AMB_RS04315 0.23 -2.0
907,899 + AMB_RS04315 0.27 +0.4
907,923 + AMB_RS04315 0.28 +0.4
907,923 + AMB_RS04315 0.28 -1.0
907,923 + AMB_RS04315 0.28 +0.4
907,923 + AMB_RS04315 0.28 -2.8
907,924 - AMB_RS04315 0.28 -0.6
907,924 - AMB_RS04315 0.28 +0.0
907,924 - AMB_RS04315 0.28 +1.6
907,924 - AMB_RS04315 0.28 +1.5
907,924 - AMB_RS04315 0.28 +0.9
908,128 + AMB_RS04315 0.36 -1.8
908,128 + AMB_RS04315 0.36 +0.4
908,129 - AMB_RS04315 0.36 +0.8
908,129 - AMB_RS04315 0.36 +0.3
908,130 + AMB_RS04315 0.36 +1.8
908,130 + AMB_RS04315 0.36 +1.3
908,130 + AMB_RS04315 0.36 +1.0
908,130 + AMB_RS04315 0.36 +0.0
908,130 + AMB_RS04315 0.36 +0.5
908,130 + AMB_RS04315 0.36 -0.6
908,130 + AMB_RS04315 0.36 +0.1
908,131 - AMB_RS04315 0.37 -0.6
908,131 - AMB_RS04315 0.37 +0.3
908,131 - AMB_RS04315 0.37 +0.9
908,131 - AMB_RS04315 0.37 +0.7
908,131 - AMB_RS04315 0.37 +0.6
908,131 - AMB_RS04315 0.37 +2.0
908,131 - AMB_RS04315 0.37 +0.9
908,131 - AMB_RS04315 0.37 +0.2
908,131 - AMB_RS04315 0.37 +0.2
908,131 - AMB_RS04315 0.37 +0.0

Or see this region's nucleotide sequence