Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03740

Experiment: carbonsource_all

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23145 and AMB_RS03740 are separated by 143 nucleotidesAMB_RS03740 and AMB_RS03745 overlap by 1 nucleotidesAMB_RS03745 and AMB_RS03750 are separated by 84 nucleotides AMB_RS03735: AMB_RS03735 - methyl-accepting chemotaxis protein, at 789,398 to 790,561 _RS03735 AMB_RS23145: AMB_RS23145 - hypothetical protein, at 790,246 to 791,394 _RS23145 AMB_RS03740: AMB_RS03740 - signal transduction protein, at 791,538 to 793,577 _RS03740 AMB_RS03745: AMB_RS03745 - prolyl-tRNA synthetase associated domain-containing protein, at 793,577 to 794,068 _RS03745 AMB_RS03750: AMB_RS03750 - hypothetical protein, at 794,153 to 794,800 _RS03750 Position (kb) 791 792 793 794Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 791.098 kb on + strand, within AMB_RS23145at 791.406 kb on - strandat 791.406 kb on - strandat 791.488 kb on + strandat 791.488 kb on + strandat 791.507 kb on - strandat 791.724 kb on + strandat 791.725 kb on - strandat 791.725 kb on - strandat 791.725 kb on - strandat 791.952 kb on + strand, within AMB_RS03740at 791.953 kb on - strand, within AMB_RS03740at 791.959 kb on - strand, within AMB_RS03740at 792.042 kb on + strand, within AMB_RS03740at 792.064 kb on + strand, within AMB_RS03740at 792.064 kb on + strand, within AMB_RS03740at 792.065 kb on - strand, within AMB_RS03740at 792.075 kb on + strand, within AMB_RS03740at 792.075 kb on + strand, within AMB_RS03740at 792.075 kb on + strand, within AMB_RS03740at 792.076 kb on - strand, within AMB_RS03740at 792.076 kb on - strand, within AMB_RS03740at 792.076 kb on - strand, within AMB_RS03740at 792.099 kb on + strand, within AMB_RS03740at 792.100 kb on - strand, within AMB_RS03740at 792.138 kb on + strand, within AMB_RS03740at 792.139 kb on - strand, within AMB_RS03740at 792.276 kb on + strand, within AMB_RS03740at 792.309 kb on + strand, within AMB_RS03740at 792.310 kb on - strand, within AMB_RS03740at 792.360 kb on + strand, within AMB_RS03740at 792.361 kb on - strand, within AMB_RS03740at 792.531 kb on + strand, within AMB_RS03740at 792.532 kb on - strand, within AMB_RS03740at 792.532 kb on - strand, within AMB_RS03740at 792.532 kb on - strand, within AMB_RS03740at 792.777 kb on + strand, within AMB_RS03740at 792.777 kb on + strand, within AMB_RS03740at 792.777 kb on + strand, within AMB_RS03740at 792.777 kb on + strand, within AMB_RS03740at 792.778 kb on - strand, within AMB_RS03740at 792.778 kb on - strand, within AMB_RS03740at 792.778 kb on - strand, within AMB_RS03740at 792.778 kb on - strand, within AMB_RS03740at 792.948 kb on + strand, within AMB_RS03740at 792.948 kb on + strand, within AMB_RS03740at 793.335 kb on + strand, within AMB_RS03740at 793.336 kb on - strand, within AMB_RS03740at 793.344 kb on + strand, within AMB_RS03740at 793.344 kb on + strand, within AMB_RS03740at 793.344 kb on + strand, within AMB_RS03740at 793.344 kb on + strand, within AMB_RS03740at 793.345 kb on - strand, within AMB_RS03740at 793.345 kb on - strand, within AMB_RS03740at 793.360 kb on - strand, within AMB_RS03740at 793.360 kb on - strand, within AMB_RS03740at 793.758 kb on + strand, within AMB_RS03745at 793.967 kb on + strand, within AMB_RS03745at 793.967 kb on + strand, within AMB_RS03745at 793.967 kb on + strand, within AMB_RS03745at 793.967 kb on + strand, within AMB_RS03745at 793.967 kb on + strand, within AMB_RS03745at 793.967 kb on + strand, within AMB_RS03745at 793.967 kb on + strand, within AMB_RS03745at 793.968 kb on - strand, within AMB_RS03745at 793.968 kb on - strand, within AMB_RS03745at 793.968 kb on - strand, within AMB_RS03745at 793.987 kb on + strand, within AMB_RS03745at 793.987 kb on + strand, within AMB_RS03745at 793.987 kb on + strand, within AMB_RS03745at 793.987 kb on + strand, within AMB_RS03745at 793.988 kb on - strand, within AMB_RS03745at 793.988 kb on - strand, within AMB_RS03745at 793.988 kb on - strand, within AMB_RS03745at 793.988 kb on - strand, within AMB_RS03745at 793.988 kb on - strand, within AMB_RS03745at 794.102 kb on + strandat 794.103 kb on - strandat 794.103 kb on - strandat 794.151 kb on + strandat 794.151 kb on + strandat 794.151 kb on + strandat 794.152 kb on - strandat 794.163 kb on + strandat 794.163 kb on + strandat 794.163 kb on + strandat 794.163 kb on + strandat 794.163 kb on + strandat 794.163 kb on + strandat 794.164 kb on - strandat 794.164 kb on - strandat 794.164 kb on - strandat 794.354 kb on + strand, within AMB_RS03750at 794.355 kb on - strand, within AMB_RS03750at 794.396 kb on + strand, within AMB_RS03750at 794.453 kb on + strand, within AMB_RS03750at 794.453 kb on + strand, within AMB_RS03750at 794.453 kb on + strand, within AMB_RS03750at 794.454 kb on - strand, within AMB_RS03750at 794.468 kb on + strand, within AMB_RS03750at 794.468 kb on + strand, within AMB_RS03750at 794.468 kb on + strand, within AMB_RS03750at 794.468 kb on + strand, within AMB_RS03750at 794.468 kb on + strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750at 794.469 kb on - strand, within AMB_RS03750

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_all
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791,098 + AMB_RS23145 0.74 +1.1
791,406 - +0.0
791,406 - -0.1
791,488 + +1.0
791,488 + -3.6
791,507 - +2.3
791,724 + -1.7
791,725 - -1.0
791,725 - +1.8
791,725 - -1.6
791,952 + AMB_RS03740 0.20 +1.3
791,953 - AMB_RS03740 0.20 +1.0
791,959 - AMB_RS03740 0.21 +1.1
792,042 + AMB_RS03740 0.25 -3.0
792,064 + AMB_RS03740 0.26 +1.8
792,064 + AMB_RS03740 0.26 +1.2
792,065 - AMB_RS03740 0.26 +0.7
792,075 + AMB_RS03740 0.26 +2.1
792,075 + AMB_RS03740 0.26 +1.5
792,075 + AMB_RS03740 0.26 -0.4
792,076 - AMB_RS03740 0.26 +0.0
792,076 - AMB_RS03740 0.26 +0.6
792,076 - AMB_RS03740 0.26 -2.8
792,099 + AMB_RS03740 0.28 +1.7
792,100 - AMB_RS03740 0.28 +0.8
792,138 + AMB_RS03740 0.29 +0.8
792,139 - AMB_RS03740 0.29 +0.0
792,276 + AMB_RS03740 0.36 +1.8
792,309 + AMB_RS03740 0.38 +2.6
792,310 - AMB_RS03740 0.38 +1.0
792,360 + AMB_RS03740 0.40 +0.2
792,361 - AMB_RS03740 0.40 +0.7
792,531 + AMB_RS03740 0.49 -1.0
792,532 - AMB_RS03740 0.49 -1.0
792,532 - AMB_RS03740 0.49 +1.0
792,532 - AMB_RS03740 0.49 +0.8
792,777 + AMB_RS03740 0.61 -1.3
792,777 + AMB_RS03740 0.61 +1.5
792,777 + AMB_RS03740 0.61 +1.6
792,777 + AMB_RS03740 0.61 +1.6
792,778 - AMB_RS03740 0.61 +1.0
792,778 - AMB_RS03740 0.61 +1.5
792,778 - AMB_RS03740 0.61 +1.6
792,778 - AMB_RS03740 0.61 +3.6
792,948 + AMB_RS03740 0.69 +1.4
792,948 + AMB_RS03740 0.69 +0.6
793,335 + AMB_RS03740 0.88 -0.3
793,336 - AMB_RS03740 0.88 +1.7
793,344 + AMB_RS03740 0.89 +1.0
793,344 + AMB_RS03740 0.89 +0.8
793,344 + AMB_RS03740 0.89 +0.0
793,344 + AMB_RS03740 0.89 +0.8
793,345 - AMB_RS03740 0.89 +1.2
793,345 - AMB_RS03740 0.89 +0.2
793,360 - AMB_RS03740 0.89 +0.0
793,360 - AMB_RS03740 0.89 -0.8
793,758 + AMB_RS03745 0.37 +1.0
793,967 + AMB_RS03745 0.79 +1.1
793,967 + AMB_RS03745 0.79 +1.6
793,967 + AMB_RS03745 0.79 -1.0
793,967 + AMB_RS03745 0.79 +2.6
793,967 + AMB_RS03745 0.79 +0.9
793,967 + AMB_RS03745 0.79 +1.8
793,967 + AMB_RS03745 0.79 +2.0
793,968 - AMB_RS03745 0.79 +1.0
793,968 - AMB_RS03745 0.79 +1.9
793,968 - AMB_RS03745 0.79 +1.5
793,987 + AMB_RS03745 0.83 +0.2
793,987 + AMB_RS03745 0.83 +1.0
793,987 + AMB_RS03745 0.83 +0.8
793,987 + AMB_RS03745 0.83 -1.0
793,988 - AMB_RS03745 0.84 +0.0
793,988 - AMB_RS03745 0.84 +1.1
793,988 - AMB_RS03745 0.84 +1.0
793,988 - AMB_RS03745 0.84 -1.0
793,988 - AMB_RS03745 0.84 +0.9
794,102 + +0.8
794,103 - +1.5
794,103 - -2.3
794,151 + +1.0
794,151 + +0.0
794,151 + +1.0
794,152 - +2.0
794,163 + -2.4
794,163 + +0.8
794,163 + +2.3
794,163 + +0.6
794,163 + +1.2
794,163 + +2.6
794,164 - -1.6
794,164 - +1.1
794,164 - +1.5
794,354 + AMB_RS03750 0.31 +1.1
794,355 - AMB_RS03750 0.31 +0.8
794,396 + AMB_RS03750 0.38 -0.1
794,453 + AMB_RS03750 0.46 +0.8
794,453 + AMB_RS03750 0.46 +0.9
794,453 + AMB_RS03750 0.46 +0.0
794,454 - AMB_RS03750 0.46 +1.5
794,468 + AMB_RS03750 0.49 +0.8
794,468 + AMB_RS03750 0.49 +1.8
794,468 + AMB_RS03750 0.49 +1.5
794,468 + AMB_RS03750 0.49 +0.9
794,468 + AMB_RS03750 0.49 -1.0
794,469 - AMB_RS03750 0.49 -2.6
794,469 - AMB_RS03750 0.49 -0.2
794,469 - AMB_RS03750 0.49 +5.5
794,469 - AMB_RS03750 0.49 -0.3
794,469 - AMB_RS03750 0.49 +0.8
794,469 - AMB_RS03750 0.49 +0.6
794,469 - AMB_RS03750 0.49 +1.7
794,469 - AMB_RS03750 0.49 +2.8
794,469 - AMB_RS03750 0.49 +1.4
794,469 - AMB_RS03750 0.49 -2.0

Or see this region's nucleotide sequence