Experiment: carbonsource_all
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03615 and AMB_RS03620 overlap by 4 nucleotides AMB_RS03620 and AMB_RS03625 are separated by 54 nucleotides AMB_RS03625 and AMB_RS03630 are separated by 108 nucleotides
AMB_RS03615: AMB_RS03615 - hypothetical protein, at 761,238 to 761,660
_RS03615
AMB_RS03620: AMB_RS03620 - iron-dependent peroxidase, at 761,657 to 762,559
_RS03620
AMB_RS03625: AMB_RS03625 - hypothetical protein, at 762,614 to 763,990
_RS03625
AMB_RS03630: AMB_RS03630 - hypothetical protein, at 764,099 to 765,715
_RS03630
Position (kb) 762
763
764 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 761.635 kb on + strand at 761.636 kb on - strand at 761.636 kb on - strand at 762.188 kb on + strand, within AMB_RS03620 at 762.188 kb on + strand, within AMB_RS03620 at 762.189 kb on - strand, within AMB_RS03620 at 762.189 kb on - strand, within AMB_RS03620 at 762.189 kb on - strand, within AMB_RS03620 at 762.189 kb on - strand, within AMB_RS03620 at 762.365 kb on + strand, within AMB_RS03620 at 762.392 kb on + strand, within AMB_RS03620 at 762.392 kb on + strand, within AMB_RS03620 at 762.392 kb on + strand, within AMB_RS03620 at 762.392 kb on + strand, within AMB_RS03620 at 762.393 kb on - strand, within AMB_RS03620 at 762.393 kb on - strand, within AMB_RS03620 at 762.393 kb on - strand, within AMB_RS03620 at 762.404 kb on + strand, within AMB_RS03620 at 762.405 kb on - strand, within AMB_RS03620 at 762.719 kb on + strand at 762.720 kb on - strand at 762.720 kb on - strand at 762.720 kb on - strand at 762.720 kb on - strand at 763.409 kb on + strand, within AMB_RS03625 at 763.409 kb on + strand, within AMB_RS03625 at 763.409 kb on + strand, within AMB_RS03625 at 763.409 kb on + strand, within AMB_RS03625 at 763.410 kb on - strand, within AMB_RS03625 at 763.410 kb on - strand, within AMB_RS03625 at 763.410 kb on - strand, within AMB_RS03625 at 763.978 kb on + strand at 763.979 kb on - strand at 764.013 kb on + strand at 764.014 kb on - strand at 764.014 kb on - strand at 764.036 kb on + strand at 764.036 kb on + strand at 764.036 kb on + strand at 764.037 kb on - strand at 764.037 kb on - strand at 764.362 kb on - strand, within AMB_RS03630 at 764.362 kb on - strand, within AMB_RS03630 at 764.508 kb on - strand, within AMB_RS03630 at 764.575 kb on - strand, within AMB_RS03630 at 764.638 kb on - strand, within AMB_RS03630 at 764.638 kb on - strand, within AMB_RS03630 at 764.638 kb on - strand, within AMB_RS03630
Per-strain Table
Position Strand Gene LocusTag Fraction carbonsource_all remove 761,635 + +0.8 761,636 - +1.9 761,636 - +1.3 762,188 + AMB_RS03620 0.59 +1.6 762,188 + AMB_RS03620 0.59 +1.0 762,189 - AMB_RS03620 0.59 +0.3 762,189 - AMB_RS03620 0.59 +0.4 762,189 - AMB_RS03620 0.59 +2.1 762,189 - AMB_RS03620 0.59 +0.0 762,365 + AMB_RS03620 0.78 +1.4 762,392 + AMB_RS03620 0.81 +0.4 762,392 + AMB_RS03620 0.81 +0.6 762,392 + AMB_RS03620 0.81 +0.0 762,392 + AMB_RS03620 0.81 +0.8 762,393 - AMB_RS03620 0.82 +1.4 762,393 - AMB_RS03620 0.82 +0.6 762,393 - AMB_RS03620 0.82 +2.0 762,404 + AMB_RS03620 0.83 -0.4 762,405 - AMB_RS03620 0.83 -1.3 762,719 + +1.5 762,720 - +3.2 762,720 - +0.8 762,720 - +0.3 762,720 - -0.6 763,409 + AMB_RS03625 0.58 +0.0 763,409 + AMB_RS03625 0.58 -2.1 763,409 + AMB_RS03625 0.58 +0.0 763,409 + AMB_RS03625 0.58 +0.2 763,410 - AMB_RS03625 0.58 +0.4 763,410 - AMB_RS03625 0.58 +2.4 763,410 - AMB_RS03625 0.58 -1.6 763,978 + +0.9 763,979 - -0.9 764,013 + +0.7 764,014 - -0.3 764,014 - +0.6 764,036 + +1.3 764,036 + +0.5 764,036 + +0.7 764,037 - -0.2 764,037 - +0.8 764,362 - AMB_RS03630 0.16 +0.7 764,362 - AMB_RS03630 0.16 +0.0 764,508 - AMB_RS03630 0.25 -0.7 764,575 - AMB_RS03630 0.29 +0.6 764,638 - AMB_RS03630 0.33 +0.8 764,638 - AMB_RS03630 0.33 +0.6 764,638 - AMB_RS03630 0.33 -1.0
Or see this region's nucleotide sequence