Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03280

Experiment: carbonsource_all

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03275 and AMB_RS03280 are separated by 104 nucleotidesAMB_RS03280 and AMB_RS03285 overlap by 4 nucleotides AMB_RS03275: AMB_RS03275 - chromosomal replication initiator protein DnaA, at 683,848 to 685,248 _RS03275 AMB_RS03280: AMB_RS03280 - DNA polymerase III subunit beta, at 685,353 to 686,471 _RS03280 AMB_RS03285: AMB_RS03285 - DNA replication and repair protein RecF, at 686,468 to 687,652 _RS03285 Position (kb) 685 686 687Strain fitness (log2 ratio) -1 0 1 2at 685.290 kb on + strandat 685.290 kb on + strandat 685.290 kb on + strandat 685.292 kb on + strandat 685.292 kb on + strandat 685.292 kb on + strandat 685.292 kb on + strandat 685.292 kb on + strandat 685.292 kb on + strandat 685.321 kb on + strandat 685.331 kb on + strandat 685.331 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_all
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685,290 + -1.0
685,290 + +0.9
685,290 + +0.2
685,292 + +0.8
685,292 + -0.6
685,292 + +0.7
685,292 + -0.5
685,292 + +1.3
685,292 + -1.0
685,321 + -1.2
685,331 + +1.9
685,331 + +0.7

Or see this region's nucleotide sequence