Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03230

Experiment: carbonsource_all

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03220 and AMB_RS03225 are separated by 62 nucleotidesAMB_RS03225 and AMB_RS03230 are separated by 287 nucleotidesAMB_RS03230 and AMB_RS03235 are separated by 7 nucleotides AMB_RS03220: AMB_RS03220 - two-component sensor histidine kinase, at 672,161 to 674,695 _RS03220 AMB_RS03225: AMB_RS03225 - DedA family protein, at 674,758 to 675,336 _RS03225 AMB_RS03230: AMB_RS03230 - hypothetical protein, at 675,624 to 676,058 _RS03230 AMB_RS03235: AMB_RS03235 - flagellum-specific ATP synthase FliI, at 676,066 to 677,418 _RS03235 Position (kb) 675 676 677Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 674.726 kb on + strandat 674.727 kb on - strandat 675.335 kb on - strandat 675.335 kb on - strandat 675.346 kb on + strandat 675.350 kb on + strandat 675.350 kb on + strandat 675.351 kb on - strandat 675.351 kb on - strandat 675.360 kb on + strandat 675.360 kb on + strandat 675.411 kb on + strandat 675.417 kb on - strandat 675.543 kb on - strandat 675.615 kb on + strandat 675.615 kb on + strandat 675.615 kb on + strandat 675.616 kb on - strandat 675.616 kb on - strandat 675.746 kb on - strand, within AMB_RS03230at 675.871 kb on + strand, within AMB_RS03230at 675.871 kb on + strand, within AMB_RS03230at 675.872 kb on - strand, within AMB_RS03230at 675.872 kb on - strand, within AMB_RS03230at 675.872 kb on - strand, within AMB_RS03230at 675.872 kb on - strand, within AMB_RS03230at 676.067 kb on + strandat 676.067 kb on + strandat 676.068 kb on - strandat 676.127 kb on + strandat 676.127 kb on + strandat 676.128 kb on - strandat 676.128 kb on - strandat 676.128 kb on - strandat 676.128 kb on - strandat 676.191 kb on - strandat 676.193 kb on + strandat 676.194 kb on - strandat 676.194 kb on - strandat 676.271 kb on + strand, within AMB_RS03235at 676.272 kb on - strand, within AMB_RS03235at 676.546 kb on + strand, within AMB_RS03235at 676.546 kb on + strand, within AMB_RS03235at 676.547 kb on - strand, within AMB_RS03235at 676.547 kb on - strand, within AMB_RS03235at 676.547 kb on - strand, within AMB_RS03235at 676.547 kb on - strand, within AMB_RS03235at 676.569 kb on + strand, within AMB_RS03235at 676.569 kb on + strand, within AMB_RS03235at 676.569 kb on + strand, within AMB_RS03235at 676.569 kb on + strand, within AMB_RS03235at 676.569 kb on + strand, within AMB_RS03235at 676.569 kb on + strand, within AMB_RS03235at 676.570 kb on - strand, within AMB_RS03235at 676.570 kb on - strand, within AMB_RS03235at 676.707 kb on + strand, within AMB_RS03235at 676.707 kb on + strand, within AMB_RS03235at 676.707 kb on + strand, within AMB_RS03235at 676.707 kb on + strand, within AMB_RS03235at 676.708 kb on - strand, within AMB_RS03235at 676.708 kb on - strand, within AMB_RS03235at 676.708 kb on - strand, within AMB_RS03235at 676.708 kb on - strand, within AMB_RS03235at 676.708 kb on - strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.709 kb on + strand, within AMB_RS03235at 676.710 kb on - strand, within AMB_RS03235at 676.710 kb on - strand, within AMB_RS03235at 676.710 kb on - strand, within AMB_RS03235at 676.710 kb on - strand, within AMB_RS03235at 676.899 kb on + strand, within AMB_RS03235at 676.899 kb on + strand, within AMB_RS03235at 676.899 kb on + strand, within AMB_RS03235at 676.900 kb on - strand, within AMB_RS03235at 676.900 kb on - strand, within AMB_RS03235

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_all
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674,726 + +1.1
674,727 - -2.0
675,335 - +1.3
675,335 - +1.3
675,346 + +4.1
675,350 + -2.3
675,350 + +0.5
675,351 - +0.5
675,351 - +0.8
675,360 + -2.0
675,360 + +0.0
675,411 + +0.0
675,417 - +0.3
675,543 - +0.0
675,615 + -0.0
675,615 + -3.0
675,615 + +0.7
675,616 - -3.6
675,616 - -0.5
675,746 - AMB_RS03230 0.28 -3.1
675,871 + AMB_RS03230 0.57 -1.2
675,871 + AMB_RS03230 0.57 +1.2
675,872 - AMB_RS03230 0.57 +1.4
675,872 - AMB_RS03230 0.57 +0.9
675,872 - AMB_RS03230 0.57 -1.0
675,872 - AMB_RS03230 0.57 +1.6
676,067 + +0.7
676,067 + +2.0
676,068 - +0.6
676,127 + +1.1
676,127 + +0.8
676,128 - +1.4
676,128 - +0.0
676,128 - +0.0
676,128 - +0.0
676,191 - +0.6
676,193 + +1.7
676,194 - -0.4
676,194 - +2.0
676,271 + AMB_RS03235 0.15 -2.0
676,272 - AMB_RS03235 0.15 -1.0
676,546 + AMB_RS03235 0.35 +0.5
676,546 + AMB_RS03235 0.35 +1.6
676,547 - AMB_RS03235 0.36 +1.0
676,547 - AMB_RS03235 0.36 +0.0
676,547 - AMB_RS03235 0.36 +1.0
676,547 - AMB_RS03235 0.36 +0.9
676,569 + AMB_RS03235 0.37 -0.1
676,569 + AMB_RS03235 0.37 +0.3
676,569 + AMB_RS03235 0.37 +1.3
676,569 + AMB_RS03235 0.37 -1.1
676,569 + AMB_RS03235 0.37 -1.0
676,569 + AMB_RS03235 0.37 +0.9
676,570 - AMB_RS03235 0.37 +1.6
676,570 - AMB_RS03235 0.37 -2.3
676,707 + AMB_RS03235 0.47 -1.6
676,707 + AMB_RS03235 0.47 +1.0
676,707 + AMB_RS03235 0.47 +0.5
676,707 + AMB_RS03235 0.47 +1.0
676,708 - AMB_RS03235 0.47 -1.4
676,708 - AMB_RS03235 0.47 -1.1
676,708 - AMB_RS03235 0.47 +0.7
676,708 - AMB_RS03235 0.47 +1.0
676,708 - AMB_RS03235 0.47 +2.1
676,709 + AMB_RS03235 0.48 +0.0
676,709 + AMB_RS03235 0.48 +1.6
676,709 + AMB_RS03235 0.48 +0.5
676,709 + AMB_RS03235 0.48 +1.0
676,709 + AMB_RS03235 0.48 -0.5
676,709 + AMB_RS03235 0.48 +0.0
676,709 + AMB_RS03235 0.48 +2.2
676,709 + AMB_RS03235 0.48 -0.4
676,709 + AMB_RS03235 0.48 +1.0
676,709 + AMB_RS03235 0.48 +0.6
676,709 + AMB_RS03235 0.48 +0.0
676,709 + AMB_RS03235 0.48 -1.0
676,710 - AMB_RS03235 0.48 +0.0
676,710 - AMB_RS03235 0.48 +1.6
676,710 - AMB_RS03235 0.48 -0.5
676,710 - AMB_RS03235 0.48 +0.8
676,899 + AMB_RS03235 0.62 +0.9
676,899 + AMB_RS03235 0.62 +0.9
676,899 + AMB_RS03235 0.62 +0.0
676,900 - AMB_RS03235 0.62 +0.4
676,900 - AMB_RS03235 0.62 +0.8

Or see this region's nucleotide sequence