Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02935

Experiment: carbonsource_all

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02925 and AMB_RS02930 are separated by 7 nucleotidesAMB_RS02930 and AMB_RS02935 are separated by 76 nucleotidesAMB_RS02935 and AMB_RS02940 are separated by 30 nucleotides AMB_RS02925: AMB_RS02925 - spermidine/putrescine ABC transporter substrate-binding protein, at 612,326 to 613,369 _RS02925 AMB_RS02930: AMB_RS02930 - hypothetical protein, at 613,377 to 613,901 _RS02930 AMB_RS02935: AMB_RS02935 - PAS domain-containing sensor histidine kinase, at 613,978 to 616,245 _RS02935 AMB_RS02940: AMB_RS02940 - VWA domain-containing protein, at 616,276 to 617,484 _RS02940 Position (kb) 613 614 615 616 617Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 613.037 kb on + strand, within AMB_RS02925at 613.037 kb on + strand, within AMB_RS02925at 613.037 kb on + strand, within AMB_RS02925at 613.037 kb on + strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.038 kb on - strand, within AMB_RS02925at 613.044 kb on - strand, within AMB_RS02925at 613.181 kb on + strand, within AMB_RS02925at 613.181 kb on + strand, within AMB_RS02925at 613.181 kb on + strand, within AMB_RS02925at 613.182 kb on - strand, within AMB_RS02925at 613.182 kb on - strand, within AMB_RS02925at 613.182 kb on - strand, within AMB_RS02925at 613.182 kb on - strand, within AMB_RS02925at 613.539 kb on - strand, within AMB_RS02930at 613.539 kb on - strand, within AMB_RS02930at 613.609 kb on + strand, within AMB_RS02930at 613.609 kb on + strand, within AMB_RS02930at 613.610 kb on - strand, within AMB_RS02930at 613.610 kb on - strand, within AMB_RS02930at 613.610 kb on - strand, within AMB_RS02930at 613.610 kb on - strand, within AMB_RS02930at 613.639 kb on + strand, within AMB_RS02930at 613.640 kb on - strand, within AMB_RS02930at 613.640 kb on - strand, within AMB_RS02930at 613.640 kb on - strand, within AMB_RS02930at 613.640 kb on - strand, within AMB_RS02930at 613.729 kb on + strand, within AMB_RS02930at 613.729 kb on + strand, within AMB_RS02930at 613.730 kb on - strand, within AMB_RS02930at 613.852 kb on + strandat 613.852 kb on + strandat 613.853 kb on - strandat 613.853 kb on - strandat 613.853 kb on - strandat 613.853 kb on - strandat 613.884 kb on + strandat 613.884 kb on + strandat 613.885 kb on - strandat 613.885 kb on - strandat 613.885 kb on - strandat 613.885 kb on - strandat 613.922 kb on + strandat 613.922 kb on + strandat 614.557 kb on - strand, within AMB_RS02935at 614.567 kb on + strand, within AMB_RS02935at 614.609 kb on + strand, within AMB_RS02935at 614.609 kb on + strand, within AMB_RS02935at 614.609 kb on + strand, within AMB_RS02935at 614.609 kb on + strand, within AMB_RS02935at 614.609 kb on + strand, within AMB_RS02935at 614.609 kb on + strand, within AMB_RS02935at 614.609 kb on + strand, within AMB_RS02935at 614.610 kb on - strand, within AMB_RS02935at 614.610 kb on - strand, within AMB_RS02935at 614.610 kb on - strand, within AMB_RS02935at 614.610 kb on - strand, within AMB_RS02935at 614.610 kb on - strand, within AMB_RS02935at 614.610 kb on - strand, within AMB_RS02935at 614.760 kb on + strand, within AMB_RS02935at 614.761 kb on - strand, within AMB_RS02935at 614.783 kb on + strand, within AMB_RS02935at 614.783 kb on + strand, within AMB_RS02935at 614.783 kb on + strand, within AMB_RS02935at 614.783 kb on + strand, within AMB_RS02935at 614.783 kb on + strand, within AMB_RS02935at 614.784 kb on - strand, within AMB_RS02935at 614.784 kb on - strand, within AMB_RS02935at 614.858 kb on + strand, within AMB_RS02935at 614.858 kb on + strand, within AMB_RS02935at 614.859 kb on - strand, within AMB_RS02935at 614.859 kb on - strand, within AMB_RS02935at 615.278 kb on + strand, within AMB_RS02935at 615.278 kb on + strand, within AMB_RS02935at 615.279 kb on - strand, within AMB_RS02935at 615.701 kb on + strand, within AMB_RS02935at 615.743 kb on + strand, within AMB_RS02935at 615.743 kb on + strand, within AMB_RS02935at 615.743 kb on + strand, within AMB_RS02935at 615.743 kb on + strand, within AMB_RS02935at 615.744 kb on - strand, within AMB_RS02935at 615.744 kb on - strand, within AMB_RS02935at 615.744 kb on - strand, within AMB_RS02935at 615.744 kb on - strand, within AMB_RS02935at 615.744 kb on - strand, within AMB_RS02935at 615.744 kb on - strand, within AMB_RS02935at 615.814 kb on - strand, within AMB_RS02935at 615.814 kb on - strand, within AMB_RS02935at 615.875 kb on + strand, within AMB_RS02935at 615.876 kb on - strand, within AMB_RS02935at 616.222 kb on + strandat 616.223 kb on - strandat 616.223 kb on - strandat 616.263 kb on + strandat 616.263 kb on + strandat 616.264 kb on - strandat 616.565 kb on + strand, within AMB_RS02940at 616.565 kb on + strand, within AMB_RS02940at 616.565 kb on + strand, within AMB_RS02940at 616.565 kb on + strand, within AMB_RS02940at 616.566 kb on - strand, within AMB_RS02940at 616.581 kb on + strand, within AMB_RS02940at 616.581 kb on + strand, within AMB_RS02940at 616.581 kb on + strand, within AMB_RS02940at 616.581 kb on + strand, within AMB_RS02940at 616.582 kb on - strand, within AMB_RS02940at 616.582 kb on - strand, within AMB_RS02940at 616.582 kb on - strand, within AMB_RS02940at 616.649 kb on + strand, within AMB_RS02940at 616.667 kb on + strand, within AMB_RS02940at 616.667 kb on + strand, within AMB_RS02940at 616.667 kb on + strand, within AMB_RS02940at 616.668 kb on - strand, within AMB_RS02940at 616.668 kb on - strand, within AMB_RS02940at 616.699 kb on + strand, within AMB_RS02940at 617.037 kb on + strand, within AMB_RS02940at 617.039 kb on + strand, within AMB_RS02940at 617.039 kb on + strand, within AMB_RS02940at 617.039 kb on + strand, within AMB_RS02940at 617.039 kb on + strand, within AMB_RS02940at 617.040 kb on - strand, within AMB_RS02940at 617.045 kb on + strand, within AMB_RS02940at 617.046 kb on - strand, within AMB_RS02940at 617.046 kb on - strand, within AMB_RS02940

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_all
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613,037 + AMB_RS02925 0.68 +0.0
613,037 + AMB_RS02925 0.68 +1.3
613,037 + AMB_RS02925 0.68 +0.6
613,037 + AMB_RS02925 0.68 +1.2
613,038 - AMB_RS02925 0.68 +0.0
613,038 - AMB_RS02925 0.68 +0.0
613,038 - AMB_RS02925 0.68 +0.6
613,038 - AMB_RS02925 0.68 +1.3
613,038 - AMB_RS02925 0.68 +0.2
613,038 - AMB_RS02925 0.68 +1.6
613,044 - AMB_RS02925 0.69 -3.9
613,181 + AMB_RS02925 0.82 -1.0
613,181 + AMB_RS02925 0.82 +1.1
613,181 + AMB_RS02925 0.82 +0.6
613,182 - AMB_RS02925 0.82 +1.2
613,182 - AMB_RS02925 0.82 +0.6
613,182 - AMB_RS02925 0.82 +0.5
613,182 - AMB_RS02925 0.82 +2.8
613,539 - AMB_RS02930 0.31 +0.6
613,539 - AMB_RS02930 0.31 +0.0
613,609 + AMB_RS02930 0.44 +1.5
613,609 + AMB_RS02930 0.44 +1.5
613,610 - AMB_RS02930 0.44 +1.4
613,610 - AMB_RS02930 0.44 +0.9
613,610 - AMB_RS02930 0.44 +0.3
613,610 - AMB_RS02930 0.44 +0.5
613,639 + AMB_RS02930 0.50 +0.4
613,640 - AMB_RS02930 0.50 +1.0
613,640 - AMB_RS02930 0.50 +0.2
613,640 - AMB_RS02930 0.50 -0.7
613,640 - AMB_RS02930 0.50 +0.9
613,729 + AMB_RS02930 0.67 +1.2
613,729 + AMB_RS02930 0.67 -1.0
613,730 - AMB_RS02930 0.67 +2.9
613,852 + +1.7
613,852 + +1.1
613,853 - +1.0
613,853 - +1.0
613,853 - +0.0
613,853 - +1.3
613,884 + +0.4
613,884 + -1.0
613,885 - +2.6
613,885 - +1.0
613,885 - +0.4
613,885 - +1.8
613,922 + +3.6
613,922 + +0.5
614,557 - AMB_RS02935 0.26 +1.0
614,567 + AMB_RS02935 0.26 +1.2
614,609 + AMB_RS02935 0.28 +0.6
614,609 + AMB_RS02935 0.28 +0.5
614,609 + AMB_RS02935 0.28 -0.6
614,609 + AMB_RS02935 0.28 +0.2
614,609 + AMB_RS02935 0.28 +0.0
614,609 + AMB_RS02935 0.28 +1.6
614,609 + AMB_RS02935 0.28 -0.1
614,610 - AMB_RS02935 0.28 +0.4
614,610 - AMB_RS02935 0.28 +0.4
614,610 - AMB_RS02935 0.28 +1.2
614,610 - AMB_RS02935 0.28 +0.7
614,610 - AMB_RS02935 0.28 +0.7
614,610 - AMB_RS02935 0.28 +3.6
614,760 + AMB_RS02935 0.34 +0.4
614,761 - AMB_RS02935 0.35 -0.3
614,783 + AMB_RS02935 0.35 +0.9
614,783 + AMB_RS02935 0.35 +1.4
614,783 + AMB_RS02935 0.35 +1.8
614,783 + AMB_RS02935 0.35 +0.2
614,783 + AMB_RS02935 0.35 +0.3
614,784 - AMB_RS02935 0.36 +1.7
614,784 - AMB_RS02935 0.36 +0.0
614,858 + AMB_RS02935 0.39 +0.0
614,858 + AMB_RS02935 0.39 +2.4
614,859 - AMB_RS02935 0.39 +0.2
614,859 - AMB_RS02935 0.39 +1.8
615,278 + AMB_RS02935 0.57 -1.0
615,278 + AMB_RS02935 0.57 -2.0
615,279 - AMB_RS02935 0.57 +0.0
615,701 + AMB_RS02935 0.76 +1.3
615,743 + AMB_RS02935 0.78 +0.3
615,743 + AMB_RS02935 0.78 +1.1
615,743 + AMB_RS02935 0.78 +2.2
615,743 + AMB_RS02935 0.78 -1.0
615,744 - AMB_RS02935 0.78 +1.4
615,744 - AMB_RS02935 0.78 +2.0
615,744 - AMB_RS02935 0.78 +0.9
615,744 - AMB_RS02935 0.78 +0.0
615,744 - AMB_RS02935 0.78 +1.1
615,744 - AMB_RS02935 0.78 +0.5
615,814 - AMB_RS02935 0.81 -2.6
615,814 - AMB_RS02935 0.81 +1.5
615,875 + AMB_RS02935 0.84 -2.3
615,876 - AMB_RS02935 0.84 +2.0
616,222 + -2.3
616,223 - +1.0
616,223 - +0.7
616,263 + +0.8
616,263 + +0.0
616,264 - -1.0
616,565 + AMB_RS02940 0.24 +0.5
616,565 + AMB_RS02940 0.24 +1.2
616,565 + AMB_RS02940 0.24 -0.4
616,565 + AMB_RS02940 0.24 +0.8
616,566 - AMB_RS02940 0.24 +0.5
616,581 + AMB_RS02940 0.25 +1.0
616,581 + AMB_RS02940 0.25 +0.3
616,581 + AMB_RS02940 0.25 -2.6
616,581 + AMB_RS02940 0.25 +0.8
616,582 - AMB_RS02940 0.25 +0.6
616,582 - AMB_RS02940 0.25 +0.0
616,582 - AMB_RS02940 0.25 +1.1
616,649 + AMB_RS02940 0.31 -2.3
616,667 + AMB_RS02940 0.32 +1.0
616,667 + AMB_RS02940 0.32 +0.6
616,667 + AMB_RS02940 0.32 +1.1
616,668 - AMB_RS02940 0.32 +0.5
616,668 - AMB_RS02940 0.32 +1.0
616,699 + AMB_RS02940 0.35 -0.6
617,037 + AMB_RS02940 0.63 +2.7
617,039 + AMB_RS02940 0.63 -2.3
617,039 + AMB_RS02940 0.63 -0.6
617,039 + AMB_RS02940 0.63 +1.3
617,039 + AMB_RS02940 0.63 -0.4
617,040 - AMB_RS02940 0.63 -1.2
617,045 + AMB_RS02940 0.64 +1.1
617,046 - AMB_RS02940 0.64 +1.2
617,046 - AMB_RS02940 0.64 -1.4

Or see this region's nucleotide sequence