Experiment: carbonsource_all
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23140 and AMB_RS02455 overlap by 4 nucleotides AMB_RS02455 and AMB_RS02460 are separated by 16 nucleotides AMB_RS02460 and AMB_RS02465 are separated by 8 nucleotides
AMB_RS23140: AMB_RS23140 - hypothetical protein, at 506,841 to 509,726
_RS23140
AMB_RS02455: AMB_RS02455 - hypothetical protein, at 509,723 to 510,328
_RS02455
AMB_RS02460: AMB_RS02460 - hypothetical protein, at 510,345 to 511,115
_RS02460
AMB_RS02465: AMB_RS02465 - hypothetical protein, at 511,124 to 511,480
_RS02465
Position (kb) 509
510
511 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 508.737 kb on + strand, within AMB_RS23140 at 508.737 kb on + strand, within AMB_RS23140 at 508.737 kb on + strand, within AMB_RS23140 at 508.737 kb on + strand, within AMB_RS23140 at 508.737 kb on + strand, within AMB_RS23140 at 508.737 kb on + strand, within AMB_RS23140 at 508.737 kb on + strand, within AMB_RS23140 at 508.737 kb on + strand, within AMB_RS23140 at 508.737 kb on + strand, within AMB_RS23140 at 508.737 kb on + strand, within AMB_RS23140 at 508.738 kb on - strand, within AMB_RS23140 at 508.738 kb on - strand, within AMB_RS23140 at 508.738 kb on - strand, within AMB_RS23140 at 508.738 kb on - strand, within AMB_RS23140 at 508.738 kb on - strand, within AMB_RS23140 at 508.738 kb on - strand, within AMB_RS23140 at 508.738 kb on - strand, within AMB_RS23140 at 508.738 kb on - strand, within AMB_RS23140 at 508.738 kb on - strand, within AMB_RS23140 at 508.738 kb on - strand, within AMB_RS23140 at 508.812 kb on + strand, within AMB_RS23140 at 508.836 kb on + strand, within AMB_RS23140 at 508.836 kb on + strand, within AMB_RS23140 at 508.836 kb on + strand, within AMB_RS23140 at 508.836 kb on + strand, within AMB_RS23140 at 508.836 kb on + strand, within AMB_RS23140 at 508.836 kb on + strand, within AMB_RS23140 at 508.836 kb on + strand, within AMB_RS23140 at 508.836 kb on + strand, within AMB_RS23140 at 508.836 kb on + strand, within AMB_RS23140 at 508.836 kb on + strand, within AMB_RS23140 at 508.836 kb on + strand, within AMB_RS23140 at 508.837 kb on - strand, within AMB_RS23140 at 508.837 kb on - strand, within AMB_RS23140 at 508.837 kb on - strand, within AMB_RS23140 at 508.837 kb on - strand, within AMB_RS23140 at 508.837 kb on - strand, within AMB_RS23140 at 508.837 kb on - strand, within AMB_RS23140 at 508.837 kb on - strand, within AMB_RS23140 at 508.837 kb on - strand, within AMB_RS23140 at 508.837 kb on - strand, within AMB_RS23140 at 509.385 kb on + strand, within AMB_RS23140 at 509.385 kb on + strand, within AMB_RS23140 at 509.385 kb on + strand, within AMB_RS23140 at 509.385 kb on + strand, within AMB_RS23140 at 509.385 kb on + strand, within AMB_RS23140 at 509.385 kb on + strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.422 kb on - strand, within AMB_RS23140 at 509.774 kb on + strand at 509.774 kb on + strand at 509.774 kb on + strand at 509.774 kb on + strand at 509.774 kb on + strand at 509.775 kb on - strand at 509.775 kb on - strand at 509.775 kb on - strand at 509.775 kb on - strand at 510.180 kb on - strand, within AMB_RS02455 at 510.180 kb on - strand, within AMB_RS02455 at 510.180 kb on - strand, within AMB_RS02455 at 510.183 kb on - strand, within AMB_RS02455 at 510.183 kb on - strand, within AMB_RS02455 at 510.390 kb on + strand at 510.390 kb on + strand at 510.390 kb on + strand at 510.390 kb on + strand at 510.390 kb on + strand at 510.391 kb on - strand at 510.391 kb on - strand at 510.391 kb on - strand at 510.391 kb on - strand at 510.391 kb on - strand at 510.391 kb on - strand at 510.391 kb on - strand at 510.447 kb on + strand, within AMB_RS02460 at 510.447 kb on + strand, within AMB_RS02460 at 510.447 kb on + strand, within AMB_RS02460 at 510.562 kb on - strand, within AMB_RS02460 at 510.562 kb on - strand, within AMB_RS02460 at 510.562 kb on - strand, within AMB_RS02460 at 510.564 kb on + strand, within AMB_RS02460 at 510.564 kb on + strand, within AMB_RS02460 at 510.565 kb on - strand, within AMB_RS02460 at 510.565 kb on - strand, within AMB_RS02460 at 510.565 kb on - strand, within AMB_RS02460 at 510.565 kb on - strand, within AMB_RS02460 at 510.565 kb on - strand, within AMB_RS02460 at 510.659 kb on + strand, within AMB_RS02460 at 510.687 kb on - strand, within AMB_RS02460 at 510.716 kb on + strand, within AMB_RS02460 at 510.717 kb on - strand, within AMB_RS02460 at 510.717 kb on - strand, within AMB_RS02460 at 510.717 kb on - strand, within AMB_RS02460 at 510.990 kb on + strand, within AMB_RS02460 at 510.991 kb on - strand, within AMB_RS02460 at 510.991 kb on - strand, within AMB_RS02460 at 510.991 kb on - strand, within AMB_RS02460 at 511.166 kb on + strand, within AMB_RS02465 at 511.166 kb on + strand, within AMB_RS02465 at 511.226 kb on + strand, within AMB_RS02465 at 511.226 kb on + strand, within AMB_RS02465 at 511.226 kb on + strand, within AMB_RS02465 at 511.226 kb on + strand, within AMB_RS02465 at 511.227 kb on - strand, within AMB_RS02465 at 511.227 kb on - strand, within AMB_RS02465 at 511.227 kb on - strand, within AMB_RS02465 at 511.227 kb on - strand, within AMB_RS02465 at 511.227 kb on - strand, within AMB_RS02465 at 511.304 kb on + strand, within AMB_RS02465
Per-strain Table
Position Strand Gene LocusTag Fraction carbonsource_all remove 508,737 + AMB_RS23140 0.66 +0.0 508,737 + AMB_RS23140 0.66 -1.6 508,737 + AMB_RS23140 0.66 +2.3 508,737 + AMB_RS23140 0.66 +1.0 508,737 + AMB_RS23140 0.66 +0.7 508,737 + AMB_RS23140 0.66 +2.2 508,737 + AMB_RS23140 0.66 -1.0 508,737 + AMB_RS23140 0.66 +1.4 508,737 + AMB_RS23140 0.66 -0.3 508,737 + AMB_RS23140 0.66 -0.1 508,738 - AMB_RS23140 0.66 +1.9 508,738 - AMB_RS23140 0.66 -0.2 508,738 - AMB_RS23140 0.66 +1.0 508,738 - AMB_RS23140 0.66 -2.6 508,738 - AMB_RS23140 0.66 +0.2 508,738 - AMB_RS23140 0.66 +1.0 508,738 - AMB_RS23140 0.66 +0.8 508,738 - AMB_RS23140 0.66 +0.8 508,738 - AMB_RS23140 0.66 -3.0 508,738 - AMB_RS23140 0.66 -0.1 508,812 + AMB_RS23140 0.68 -1.0 508,836 + AMB_RS23140 0.69 +3.2 508,836 + AMB_RS23140 0.69 +0.0 508,836 + AMB_RS23140 0.69 -1.0 508,836 + AMB_RS23140 0.69 +1.8 508,836 + AMB_RS23140 0.69 -0.8 508,836 + AMB_RS23140 0.69 +0.0 508,836 + AMB_RS23140 0.69 +2.8 508,836 + AMB_RS23140 0.69 +0.3 508,836 + AMB_RS23140 0.69 +0.0 508,836 + AMB_RS23140 0.69 +0.0 508,836 + AMB_RS23140 0.69 -0.6 508,837 - AMB_RS23140 0.69 +1.1 508,837 - AMB_RS23140 0.69 +0.6 508,837 - AMB_RS23140 0.69 +2.9 508,837 - AMB_RS23140 0.69 +1.1 508,837 - AMB_RS23140 0.69 -2.6 508,837 - AMB_RS23140 0.69 +0.3 508,837 - AMB_RS23140 0.69 +0.6 508,837 - AMB_RS23140 0.69 -0.6 508,837 - AMB_RS23140 0.69 +2.4 509,385 + AMB_RS23140 0.88 +0.4 509,385 + AMB_RS23140 0.88 +0.1 509,385 + AMB_RS23140 0.88 +0.2 509,385 + AMB_RS23140 0.88 +2.6 509,385 + AMB_RS23140 0.88 +0.6 509,385 + AMB_RS23140 0.88 +0.6 509,386 - AMB_RS23140 0.88 +0.7 509,386 - AMB_RS23140 0.88 +0.0 509,386 - AMB_RS23140 0.88 +2.8 509,386 - AMB_RS23140 0.88 -2.9 509,386 - AMB_RS23140 0.88 +1.0 509,386 - AMB_RS23140 0.88 -2.6 509,386 - AMB_RS23140 0.88 -0.3 509,386 - AMB_RS23140 0.88 +2.3 509,386 - AMB_RS23140 0.88 -0.4 509,422 - AMB_RS23140 0.89 +1.3 509,774 + -0.5 509,774 + +1.4 509,774 + +1.3 509,774 + +1.0 509,774 + +0.9 509,775 - +0.0 509,775 - +0.4 509,775 - -1.7 509,775 - +2.0 510,180 - AMB_RS02455 0.75 +0.8 510,180 - AMB_RS02455 0.75 +1.8 510,180 - AMB_RS02455 0.75 +2.0 510,183 - AMB_RS02455 0.76 +0.0 510,183 - AMB_RS02455 0.76 +1.8 510,390 + -0.6 510,390 + -0.3 510,390 + -0.4 510,390 + +1.1 510,390 + -1.0 510,391 - +3.6 510,391 - +0.4 510,391 - +2.6 510,391 - +0.9 510,391 - +0.5 510,391 - +0.4 510,391 - +0.4 510,447 + AMB_RS02460 0.13 -2.8 510,447 + AMB_RS02460 0.13 +0.8 510,447 + AMB_RS02460 0.13 +0.0 510,562 - AMB_RS02460 0.28 +2.2 510,562 - AMB_RS02460 0.28 +0.2 510,562 - AMB_RS02460 0.28 +3.0 510,564 + AMB_RS02460 0.28 +0.2 510,564 + AMB_RS02460 0.28 +0.9 510,565 - AMB_RS02460 0.29 +0.0 510,565 - AMB_RS02460 0.29 +0.7 510,565 - AMB_RS02460 0.29 +1.0 510,565 - AMB_RS02460 0.29 +0.9 510,565 - AMB_RS02460 0.29 -0.1 510,659 + AMB_RS02460 0.41 +0.0 510,687 - AMB_RS02460 0.44 +0.0 510,716 + AMB_RS02460 0.48 +0.8 510,717 - AMB_RS02460 0.48 +0.4 510,717 - AMB_RS02460 0.48 +2.7 510,717 - AMB_RS02460 0.48 -1.0 510,990 + AMB_RS02460 0.84 -1.1 510,991 - AMB_RS02460 0.84 +0.9 510,991 - AMB_RS02460 0.84 -1.0 510,991 - AMB_RS02460 0.84 +2.1 511,166 + AMB_RS02465 0.12 -0.6 511,166 + AMB_RS02465 0.12 +1.5 511,226 + AMB_RS02465 0.29 +0.0 511,226 + AMB_RS02465 0.29 +1.4 511,226 + AMB_RS02465 0.29 +0.6 511,226 + AMB_RS02465 0.29 +0.6 511,227 - AMB_RS02465 0.29 +1.6 511,227 - AMB_RS02465 0.29 +0.0 511,227 - AMB_RS02465 0.29 +1.2 511,227 - AMB_RS02465 0.29 +3.2 511,227 - AMB_RS02465 0.29 +1.2 511,304 + AMB_RS02465 0.50 +0.6
Or see this region's nucleotide sequence