Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01840

Experiment: carbonsource_all

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01830 and AMB_RS01835 overlap by 8 nucleotidesAMB_RS01835 and AMB_RS01840 are separated by 403 nucleotidesAMB_RS01840 and AMB_RS01845 are separated by 2 nucleotides AMB_RS01830: AMB_RS01830 - hypothetical protein, at 395,107 to 395,304 _RS01830 AMB_RS01835: AMB_RS01835 - hypothetical protein, at 395,297 to 395,788 _RS01835 AMB_RS01840: AMB_RS01840 - DNA methyltransferase, at 396,192 to 397,745 _RS01840 AMB_RS01845: AMB_RS01845 - DNA methylase, at 397,748 to 399,019 _RS01845 Position (kb) 396 397 398Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 395.267 kb on - strand, within AMB_RS01830at 395.393 kb on + strand, within AMB_RS01835at 395.393 kb on + strand, within AMB_RS01835at 395.393 kb on + strand, within AMB_RS01835at 395.393 kb on + strand, within AMB_RS01835at 395.393 kb on + strand, within AMB_RS01835at 395.394 kb on - strand, within AMB_RS01835at 395.394 kb on - strand, within AMB_RS01835at 395.394 kb on - strand, within AMB_RS01835at 395.394 kb on - strand, within AMB_RS01835at 395.394 kb on - strand, within AMB_RS01835at 395.394 kb on - strand, within AMB_RS01835at 395.394 kb on - strand, within AMB_RS01835at 395.394 kb on - strand, within AMB_RS01835at 395.426 kb on + strand, within AMB_RS01835at 395.439 kb on - strand, within AMB_RS01835at 395.601 kb on + strand, within AMB_RS01835at 395.601 kb on + strand, within AMB_RS01835at 395.601 kb on + strand, within AMB_RS01835at 395.601 kb on + strand, within AMB_RS01835at 395.601 kb on + strand, within AMB_RS01835at 395.601 kb on + strand, within AMB_RS01835at 395.601 kb on + strand, within AMB_RS01835at 395.602 kb on - strand, within AMB_RS01835at 395.602 kb on - strand, within AMB_RS01835at 395.602 kb on - strand, within AMB_RS01835at 395.602 kb on - strand, within AMB_RS01835at 395.602 kb on - strand, within AMB_RS01835at 395.602 kb on - strand, within AMB_RS01835at 395.626 kb on + strand, within AMB_RS01835at 395.626 kb on + strand, within AMB_RS01835at 395.626 kb on + strand, within AMB_RS01835at 395.627 kb on - strand, within AMB_RS01835at 395.628 kb on - strand, within AMB_RS01835at 395.639 kb on + strand, within AMB_RS01835at 395.640 kb on - strand, within AMB_RS01835at 395.640 kb on - strand, within AMB_RS01835at 395.640 kb on - strand, within AMB_RS01835at 395.790 kb on - strandat 395.927 kb on + strandat 395.927 kb on + strandat 395.927 kb on + strandat 395.927 kb on + strandat 395.928 kb on - strandat 395.928 kb on - strandat 395.928 kb on - strandat 395.928 kb on - strandat 395.972 kb on + strandat 395.972 kb on + strandat 395.972 kb on + strandat 395.973 kb on - strandat 395.973 kb on - strandat 396.033 kb on + strandat 396.033 kb on + strandat 396.270 kb on + strandat 396.270 kb on + strandat 396.271 kb on - strandat 396.271 kb on - strandat 396.271 kb on - strandat 396.271 kb on - strandat 396.271 kb on - strandat 396.271 kb on - strandat 396.271 kb on - strandat 396.579 kb on + strand, within AMB_RS01840at 396.579 kb on + strand, within AMB_RS01840at 396.579 kb on + strand, within AMB_RS01840at 396.579 kb on + strand, within AMB_RS01840at 396.579 kb on + strand, within AMB_RS01840at 396.579 kb on + strand, within AMB_RS01840at 396.580 kb on - strand, within AMB_RS01840at 396.580 kb on - strand, within AMB_RS01840at 396.580 kb on - strand, within AMB_RS01840at 396.759 kb on + strand, within AMB_RS01840at 396.759 kb on + strand, within AMB_RS01840at 396.835 kb on + strand, within AMB_RS01840at 396.911 kb on + strand, within AMB_RS01840at 396.911 kb on + strand, within AMB_RS01840at 396.911 kb on + strand, within AMB_RS01840at 396.912 kb on - strand, within AMB_RS01840at 397.326 kb on + strand, within AMB_RS01840at 397.326 kb on + strand, within AMB_RS01840at 397.327 kb on - strand, within AMB_RS01840at 397.327 kb on - strand, within AMB_RS01840at 397.327 kb on - strand, within AMB_RS01840at 397.327 kb on - strand, within AMB_RS01840at 397.419 kb on + strand, within AMB_RS01840at 397.419 kb on + strand, within AMB_RS01840at 397.419 kb on + strand, within AMB_RS01840at 397.420 kb on - strand, within AMB_RS01840at 397.420 kb on - strand, within AMB_RS01840at 397.420 kb on - strand, within AMB_RS01840at 397.420 kb on - strand, within AMB_RS01840at 397.611 kb on + strandat 397.611 kb on + strandat 397.612 kb on - strandat 397.612 kb on - strandat 397.669 kb on - strandat 397.669 kb on - strandat 397.806 kb on - strandat 397.964 kb on - strand, within AMB_RS01845at 398.015 kb on + strand, within AMB_RS01845at 398.015 kb on + strand, within AMB_RS01845at 398.015 kb on + strand, within AMB_RS01845at 398.015 kb on + strand, within AMB_RS01845at 398.017 kb on + strand, within AMB_RS01845at 398.017 kb on + strand, within AMB_RS01845at 398.018 kb on - strand, within AMB_RS01845at 398.032 kb on + strand, within AMB_RS01845at 398.032 kb on + strand, within AMB_RS01845at 398.033 kb on - strand, within AMB_RS01845at 398.033 kb on - strand, within AMB_RS01845at 398.033 kb on - strand, within AMB_RS01845at 398.033 kb on - strand, within AMB_RS01845at 398.033 kb on - strand, within AMB_RS01845at 398.033 kb on - strand, within AMB_RS01845at 398.375 kb on + strand, within AMB_RS01845at 398.375 kb on + strand, within AMB_RS01845at 398.376 kb on - strand, within AMB_RS01845at 398.376 kb on - strand, within AMB_RS01845at 398.495 kb on + strand, within AMB_RS01845at 398.495 kb on + strand, within AMB_RS01845at 398.496 kb on - strand, within AMB_RS01845at 398.496 kb on - strand, within AMB_RS01845at 398.496 kb on - strand, within AMB_RS01845at 398.615 kb on + strand, within AMB_RS01845at 398.642 kb on + strand, within AMB_RS01845at 398.642 kb on + strand, within AMB_RS01845at 398.642 kb on + strand, within AMB_RS01845at 398.642 kb on + strand, within AMB_RS01845at 398.643 kb on - strand, within AMB_RS01845

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_all
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395,267 - AMB_RS01830 0.81 +0.3
395,393 + AMB_RS01835 0.20 +0.5
395,393 + AMB_RS01835 0.20 -0.5
395,393 + AMB_RS01835 0.20 +1.3
395,393 + AMB_RS01835 0.20 +0.6
395,393 + AMB_RS01835 0.20 +1.3
395,394 - AMB_RS01835 0.20 +0.4
395,394 - AMB_RS01835 0.20 +1.1
395,394 - AMB_RS01835 0.20 +4.0
395,394 - AMB_RS01835 0.20 +1.1
395,394 - AMB_RS01835 0.20 -1.0
395,394 - AMB_RS01835 0.20 +0.1
395,394 - AMB_RS01835 0.20 +0.8
395,394 - AMB_RS01835 0.20 -1.3
395,426 + AMB_RS01835 0.26 -0.0
395,439 - AMB_RS01835 0.29 +2.3
395,601 + AMB_RS01835 0.62 +1.1
395,601 + AMB_RS01835 0.62 +0.9
395,601 + AMB_RS01835 0.62 -0.2
395,601 + AMB_RS01835 0.62 +0.0
395,601 + AMB_RS01835 0.62 -0.5
395,601 + AMB_RS01835 0.62 +0.4
395,601 + AMB_RS01835 0.62 +0.0
395,602 - AMB_RS01835 0.62 +1.6
395,602 - AMB_RS01835 0.62 +1.3
395,602 - AMB_RS01835 0.62 +2.3
395,602 - AMB_RS01835 0.62 +0.1
395,602 - AMB_RS01835 0.62 -0.3
395,602 - AMB_RS01835 0.62 -0.4
395,626 + AMB_RS01835 0.67 +1.0
395,626 + AMB_RS01835 0.67 +0.4
395,626 + AMB_RS01835 0.67 +1.2
395,627 - AMB_RS01835 0.67 +0.5
395,628 - AMB_RS01835 0.67 +2.8
395,639 + AMB_RS01835 0.70 +0.9
395,640 - AMB_RS01835 0.70 +0.9
395,640 - AMB_RS01835 0.70 -0.6
395,640 - AMB_RS01835 0.70 +0.8
395,790 - +2.3
395,927 + +2.0
395,927 + -0.9
395,927 + +0.2
395,927 + +0.7
395,928 - +0.8
395,928 - -0.2
395,928 - +1.3
395,928 - +0.0
395,972 + +0.8
395,972 + +0.8
395,972 + +0.8
395,973 - +0.7
395,973 - +0.4
396,033 + -0.2
396,033 + +1.0
396,270 + +0.3
396,270 + -0.1
396,271 - +1.1
396,271 - +2.2
396,271 - +1.5
396,271 - +1.1
396,271 - +1.4
396,271 - +0.8
396,271 - +1.1
396,579 + AMB_RS01840 0.25 +1.3
396,579 + AMB_RS01840 0.25 +1.4
396,579 + AMB_RS01840 0.25 +0.7
396,579 + AMB_RS01840 0.25 +1.8
396,579 + AMB_RS01840 0.25 +0.7
396,579 + AMB_RS01840 0.25 +1.8
396,580 - AMB_RS01840 0.25 +1.1
396,580 - AMB_RS01840 0.25 +2.2
396,580 - AMB_RS01840 0.25 +1.0
396,759 + AMB_RS01840 0.36 +0.4
396,759 + AMB_RS01840 0.36 +0.9
396,835 + AMB_RS01840 0.41 +1.0
396,911 + AMB_RS01840 0.46 -1.6
396,911 + AMB_RS01840 0.46 +0.3
396,911 + AMB_RS01840 0.46 +1.0
396,912 - AMB_RS01840 0.46 +1.2
397,326 + AMB_RS01840 0.73 +1.2
397,326 + AMB_RS01840 0.73 +1.3
397,327 - AMB_RS01840 0.73 +0.0
397,327 - AMB_RS01840 0.73 +2.7
397,327 - AMB_RS01840 0.73 +0.8
397,327 - AMB_RS01840 0.73 +1.1
397,419 + AMB_RS01840 0.79 +1.2
397,419 + AMB_RS01840 0.79 +0.8
397,419 + AMB_RS01840 0.79 -2.0
397,420 - AMB_RS01840 0.79 +0.0
397,420 - AMB_RS01840 0.79 +1.0
397,420 - AMB_RS01840 0.79 +0.9
397,420 - AMB_RS01840 0.79 -2.4
397,611 + -0.7
397,611 + +1.2
397,612 - +1.6
397,612 - -3.0
397,669 - -1.0
397,669 - -1.0
397,806 - +1.6
397,964 - AMB_RS01845 0.17 +2.0
398,015 + AMB_RS01845 0.21 +0.4
398,015 + AMB_RS01845 0.21 +1.2
398,015 + AMB_RS01845 0.21 +0.0
398,015 + AMB_RS01845 0.21 -1.0
398,017 + AMB_RS01845 0.21 +0.2
398,017 + AMB_RS01845 0.21 +1.5
398,018 - AMB_RS01845 0.21 +1.4
398,032 + AMB_RS01845 0.22 -0.2
398,032 + AMB_RS01845 0.22 +1.0
398,033 - AMB_RS01845 0.22 +0.4
398,033 - AMB_RS01845 0.22 +1.4
398,033 - AMB_RS01845 0.22 +0.5
398,033 - AMB_RS01845 0.22 +0.5
398,033 - AMB_RS01845 0.22 +0.8
398,033 - AMB_RS01845 0.22 -0.3
398,375 + AMB_RS01845 0.49 +0.2
398,375 + AMB_RS01845 0.49 +1.6
398,376 - AMB_RS01845 0.49 +0.5
398,376 - AMB_RS01845 0.49 +1.5
398,495 + AMB_RS01845 0.59 +1.3
398,495 + AMB_RS01845 0.59 +0.5
398,496 - AMB_RS01845 0.59 +0.0
398,496 - AMB_RS01845 0.59 +1.3
398,496 - AMB_RS01845 0.59 -3.3
398,615 + AMB_RS01845 0.68 +2.3
398,642 + AMB_RS01845 0.70 +1.1
398,642 + AMB_RS01845 0.70 +0.6
398,642 + AMB_RS01845 0.70 +0.7
398,642 + AMB_RS01845 0.70 +1.1
398,643 - AMB_RS01845 0.70 +0.5

Or see this region's nucleotide sequence