Experiment: carbonsource_all
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01750 and AMB_RS01755 overlap by 4 nucleotides AMB_RS01755 and AMB_RS01760 overlap by 4 nucleotides AMB_RS01760 and AMB_RS23100 are separated by 17 nucleotides AMB_RS23100 and AMB_RS01770 overlap by 1 nucleotides AMB_RS01770 and AMB_RS01775 overlap by 1 nucleotides
AMB_RS01750: AMB_RS01750 - recombinase family protein, at 382,331 to 383,662
_RS01750
AMB_RS01755: AMB_RS01755 - DUF2924 domain-containing protein, at 383,659 to 384,108
_RS01755
AMB_RS01760: AMB_RS01760 - hypothetical protein, at 384,105 to 384,362
_RS01760
AMB_RS23100: AMB_RS23100 - hypothetical protein, at 384,380 to 385,057
_RS23100
AMB_RS01770: AMB_RS01770 - XRE family transcriptional regulator, at 385,057 to 385,338
_RS01770
AMB_RS01775: AMB_RS01775 - hypothetical protein, at 385,338 to 386,096
_RS01775
Position (kb) 384
385 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 383.151 kb on + strand, within AMB_RS01750 at 383.152 kb on - strand, within AMB_RS01750 at 383.152 kb on - strand, within AMB_RS01750 at 383.403 kb on + strand, within AMB_RS01750 at 383.404 kb on - strand, within AMB_RS01750 at 383.502 kb on + strand, within AMB_RS01750 at 383.502 kb on + strand, within AMB_RS01750 at 383.502 kb on + strand, within AMB_RS01750 at 383.502 kb on + strand, within AMB_RS01750 at 383.503 kb on - strand, within AMB_RS01750 at 383.550 kb on + strand at 383.550 kb on + strand at 383.550 kb on + strand at 383.551 kb on - strand at 383.551 kb on - strand at 383.551 kb on - strand at 383.628 kb on + strand at 383.628 kb on + strand at 383.628 kb on + strand at 383.628 kb on + strand at 383.628 kb on + strand at 383.629 kb on - strand at 383.629 kb on - strand at 383.629 kb on - strand at 383.629 kb on - strand at 383.629 kb on - strand at 383.629 kb on - strand at 383.629 kb on - strand at 383.629 kb on - strand at 383.629 kb on - strand at 383.629 kb on - strand at 383.629 kb on - strand at 384.005 kb on + strand, within AMB_RS01755 at 384.005 kb on + strand, within AMB_RS01755 at 384.110 kb on + strand at 384.110 kb on + strand at 384.110 kb on + strand at 384.196 kb on - strand, within AMB_RS01760 at 384.196 kb on - strand, within AMB_RS01760 at 384.196 kb on - strand, within AMB_RS01760 at 384.333 kb on + strand, within AMB_RS01760 at 384.333 kb on + strand, within AMB_RS01760 at 384.334 kb on - strand, within AMB_RS01760 at 384.345 kb on + strand at 384.381 kb on + strand at 384.381 kb on + strand at 384.381 kb on + strand at 384.381 kb on + strand at 384.382 kb on - strand at 384.382 kb on - strand at 384.541 kb on + strand, within AMB_RS23100 at 384.541 kb on + strand, within AMB_RS23100 at 384.541 kb on + strand, within AMB_RS23100 at 384.542 kb on - strand, within AMB_RS23100 at 384.542 kb on - strand, within AMB_RS23100 at 384.579 kb on + strand, within AMB_RS23100 at 384.580 kb on - strand, within AMB_RS23100 at 384.580 kb on - strand, within AMB_RS23100 at 384.634 kb on + strand, within AMB_RS23100 at 384.635 kb on - strand, within AMB_RS23100 at 384.635 kb on - strand, within AMB_RS23100 at 384.655 kb on + strand, within AMB_RS23100 at 384.655 kb on + strand, within AMB_RS23100 at 384.656 kb on - strand, within AMB_RS23100 at 384.656 kb on - strand, within AMB_RS23100 at 384.754 kb on - strand, within AMB_RS23100 at 384.754 kb on - strand, within AMB_RS23100 at 384.754 kb on - strand, within AMB_RS23100 at 384.806 kb on - strand, within AMB_RS23100 at 384.828 kb on + strand, within AMB_RS23100 at 384.829 kb on - strand, within AMB_RS23100 at 384.903 kb on + strand, within AMB_RS23100 at 384.903 kb on + strand, within AMB_RS23100 at 384.903 kb on + strand, within AMB_RS23100 at 385.029 kb on + strand at 385.029 kb on + strand at 385.029 kb on + strand at 385.029 kb on + strand at 385.029 kb on + strand at 385.030 kb on - strand at 385.030 kb on - strand at 385.030 kb on - strand at 385.030 kb on - strand at 385.030 kb on - strand at 385.030 kb on - strand at 385.247 kb on + strand, within AMB_RS01770 at 385.322 kb on + strand at 385.322 kb on + strand at 385.322 kb on + strand at 385.322 kb on + strand at 385.322 kb on + strand at 385.322 kb on + strand at 385.322 kb on + strand at 385.322 kb on + strand at 385.322 kb on + strand at 385.323 kb on - strand at 385.323 kb on - strand at 385.323 kb on - strand at 385.323 kb on - strand at 385.323 kb on - strand at 385.323 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbonsource_all remove 383,151 + AMB_RS01750 0.62 +0.5 383,152 - AMB_RS01750 0.62 +0.0 383,152 - AMB_RS01750 0.62 +0.0 383,403 + AMB_RS01750 0.80 +0.8 383,404 - AMB_RS01750 0.81 -3.7 383,502 + AMB_RS01750 0.88 +1.0 383,502 + AMB_RS01750 0.88 +0.0 383,502 + AMB_RS01750 0.88 +1.5 383,502 + AMB_RS01750 0.88 +1.4 383,503 - AMB_RS01750 0.88 +0.9 383,550 + +0.5 383,550 + +2.0 383,550 + +0.5 383,551 - +0.0 383,551 - +0.0 383,551 - -1.0 383,628 + +0.1 383,628 + +1.8 383,628 + +0.7 383,628 + -2.6 383,628 + -1.0 383,629 - +0.5 383,629 - +1.0 383,629 - -0.5 383,629 - +1.3 383,629 - +0.2 383,629 - +1.9 383,629 - +1.6 383,629 - +0.9 383,629 - -1.0 383,629 - -1.3 383,629 - +0.4 384,005 + AMB_RS01755 0.77 -0.2 384,005 + AMB_RS01755 0.77 +1.8 384,110 + -0.4 384,110 + -1.6 384,110 + -3.6 384,196 - AMB_RS01760 0.35 +0.0 384,196 - AMB_RS01760 0.35 -2.0 384,196 - AMB_RS01760 0.35 +0.0 384,333 + AMB_RS01760 0.88 +0.8 384,333 + AMB_RS01760 0.88 +0.3 384,334 - AMB_RS01760 0.89 +1.0 384,345 + +0.9 384,381 + +1.8 384,381 + +1.3 384,381 + +1.1 384,381 + +1.5 384,382 - +0.0 384,382 - -0.3 384,541 + AMB_RS23100 0.24 -0.7 384,541 + AMB_RS23100 0.24 +0.9 384,541 + AMB_RS23100 0.24 +0.0 384,542 - AMB_RS23100 0.24 +1.3 384,542 - AMB_RS23100 0.24 +0.0 384,579 + AMB_RS23100 0.29 +1.1 384,580 - AMB_RS23100 0.29 +0.9 384,580 - AMB_RS23100 0.29 +1.0 384,634 + AMB_RS23100 0.37 -1.0 384,635 - AMB_RS23100 0.38 +1.7 384,635 - AMB_RS23100 0.38 -3.1 384,655 + AMB_RS23100 0.41 +1.2 384,655 + AMB_RS23100 0.41 +1.8 384,656 - AMB_RS23100 0.41 +0.4 384,656 - AMB_RS23100 0.41 +2.6 384,754 - AMB_RS23100 0.55 -2.6 384,754 - AMB_RS23100 0.55 +1.0 384,754 - AMB_RS23100 0.55 -0.1 384,806 - AMB_RS23100 0.63 +2.3 384,828 + AMB_RS23100 0.66 +0.7 384,829 - AMB_RS23100 0.66 +0.0 384,903 + AMB_RS23100 0.77 -0.1 384,903 + AMB_RS23100 0.77 -1.1 384,903 + AMB_RS23100 0.77 +2.0 385,029 + +1.3 385,029 + +0.5 385,029 + +0.6 385,029 + +0.8 385,029 + +0.3 385,030 - +0.7 385,030 - +2.9 385,030 - +0.0 385,030 - +2.0 385,030 - -0.2 385,030 - -0.7 385,247 + AMB_RS01770 0.67 +0.6 385,322 + +1.3 385,322 + +0.5 385,322 + +0.0 385,322 + +0.0 385,322 + +1.6 385,322 + -1.6 385,322 + +0.5 385,322 + -0.2 385,322 + -0.5 385,323 - +1.8 385,323 - -1.6 385,323 - +0.0 385,323 - -3.0 385,323 - -2.6 385,323 - -0.6
Or see this region's nucleotide sequence