Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01195

Experiment: carbonsource_all

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01190 and AMB_RS01195 are separated by 108 nucleotidesAMB_RS01195 and AMB_RS01200 are separated by 106 nucleotidesAMB_RS01200 and AMB_RS01205 are separated by 3 nucleotides AMB_RS01190: AMB_RS01190 - UbiD family decarboxylase, at 264,720 to 266,234 _RS01190 AMB_RS01195: AMB_RS01195 - DUF4237 domain-containing protein, at 266,343 to 266,819 _RS01195 AMB_RS01200: AMB_RS01200 - DUF4237 domain-containing protein, at 266,926 to 267,396 _RS01200 AMB_RS01205: AMB_RS01205 - nucleoside deaminase, at 267,400 to 267,828 _RS01205 Position (kb) 266 267Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 265.596 kb on + strand, within AMB_RS01190at 265.615 kb on - strand, within AMB_RS01190at 265.617 kb on + strand, within AMB_RS01190at 265.618 kb on - strand, within AMB_RS01190at 265.618 kb on - strand, within AMB_RS01190at 265.618 kb on - strand, within AMB_RS01190at 265.618 kb on - strand, within AMB_RS01190at 265.618 kb on - strand, within AMB_RS01190at 265.683 kb on + strand, within AMB_RS01190at 265.683 kb on + strand, within AMB_RS01190at 265.683 kb on + strand, within AMB_RS01190at 265.684 kb on - strand, within AMB_RS01190at 265.684 kb on - strand, within AMB_RS01190at 265.684 kb on - strand, within AMB_RS01190at 265.684 kb on - strand, within AMB_RS01190at 265.854 kb on + strand, within AMB_RS01190at 265.914 kb on + strand, within AMB_RS01190at 265.914 kb on + strand, within AMB_RS01190at 265.914 kb on + strand, within AMB_RS01190at 265.915 kb on - strand, within AMB_RS01190at 265.915 kb on - strand, within AMB_RS01190at 265.915 kb on - strand, within AMB_RS01190at 266.043 kb on + strand, within AMB_RS01190at 266.044 kb on - strand, within AMB_RS01190at 266.238 kb on + strandat 266.239 kb on - strandat 266.248 kb on + strandat 266.263 kb on - strandat 266.266 kb on + strandat 266.298 kb on + strandat 266.298 kb on + strandat 266.300 kb on + strandat 266.301 kb on - strandat 266.388 kb on - strandat 266.628 kb on + strand, within AMB_RS01195at 266.629 kb on - strand, within AMB_RS01195at 266.629 kb on - strand, within AMB_RS01195at 266.649 kb on + strand, within AMB_RS01195at 266.649 kb on + strand, within AMB_RS01195at 266.649 kb on + strand, within AMB_RS01195at 266.650 kb on + strand, within AMB_RS01195at 266.651 kb on + strand, within AMB_RS01195at 266.651 kb on + strand, within AMB_RS01195at 266.652 kb on - strand, within AMB_RS01195at 266.658 kb on + strand, within AMB_RS01195at 266.741 kb on + strand, within AMB_RS01195at 266.741 kb on + strand, within AMB_RS01195at 267.054 kb on + strand, within AMB_RS01200at 267.054 kb on + strand, within AMB_RS01200at 267.055 kb on - strand, within AMB_RS01200at 267.055 kb on - strand, within AMB_RS01200at 267.055 kb on - strand, within AMB_RS01200at 267.055 kb on - strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.158 kb on - strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.223 kb on + strand, within AMB_RS01200at 267.223 kb on + strand, within AMB_RS01200at 267.223 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.227 kb on - strand, within AMB_RS01200at 267.227 kb on - strand, within AMB_RS01200at 267.227 kb on - strand, within AMB_RS01200at 267.227 kb on - strand, within AMB_RS01200at 267.233 kb on - strand, within AMB_RS01200at 267.233 kb on - strand, within AMB_RS01200at 267.233 kb on - strand, within AMB_RS01200at 267.233 kb on - strand, within AMB_RS01200

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_all
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265,596 + AMB_RS01190 0.58 -2.3
265,615 - AMB_RS01190 0.59 -1.6
265,617 + AMB_RS01190 0.59 -0.7
265,618 - AMB_RS01190 0.59 -2.0
265,618 - AMB_RS01190 0.59 -1.0
265,618 - AMB_RS01190 0.59 -3.9
265,618 - AMB_RS01190 0.59 +0.0
265,618 - AMB_RS01190 0.59 +0.0
265,683 + AMB_RS01190 0.64 -3.0
265,683 + AMB_RS01190 0.64 -4.0
265,683 + AMB_RS01190 0.64 -1.3
265,684 - AMB_RS01190 0.64 -3.4
265,684 - AMB_RS01190 0.64 -2.5
265,684 - AMB_RS01190 0.64 -1.0
265,684 - AMB_RS01190 0.64 -3.7
265,854 + AMB_RS01190 0.75 -2.5
265,914 + AMB_RS01190 0.79 -1.7
265,914 + AMB_RS01190 0.79 -1.4
265,914 + AMB_RS01190 0.79 -0.3
265,915 - AMB_RS01190 0.79 -2.4
265,915 - AMB_RS01190 0.79 -2.7
265,915 - AMB_RS01190 0.79 -1.4
266,043 + AMB_RS01190 0.87 -2.8
266,044 - AMB_RS01190 0.87 -3.0
266,238 + +1.5
266,239 - -0.7
266,248 + +0.0
266,263 - +1.3
266,266 + +0.0
266,298 + +3.2
266,298 + -0.2
266,300 + +0.8
266,301 - +0.6
266,388 - +0.2
266,628 + AMB_RS01195 0.60 +0.0
266,629 - AMB_RS01195 0.60 -0.5
266,629 - AMB_RS01195 0.60 +2.4
266,649 + AMB_RS01195 0.64 +0.8
266,649 + AMB_RS01195 0.64 +0.1
266,649 + AMB_RS01195 0.64 -1.5
266,650 + AMB_RS01195 0.64 +2.0
266,651 + AMB_RS01195 0.65 +1.7
266,651 + AMB_RS01195 0.65 -0.4
266,652 - AMB_RS01195 0.65 -1.5
266,658 + AMB_RS01195 0.66 +2.3
266,741 + AMB_RS01195 0.83 +0.0
266,741 + AMB_RS01195 0.83 -0.5
267,054 + AMB_RS01200 0.27 +0.6
267,054 + AMB_RS01200 0.27 +1.4
267,055 - AMB_RS01200 0.27 +0.4
267,055 - AMB_RS01200 0.27 +0.7
267,055 - AMB_RS01200 0.27 +0.0
267,055 - AMB_RS01200 0.27 -3.0
267,157 + AMB_RS01200 0.49 +1.6
267,157 + AMB_RS01200 0.49 +1.6
267,157 + AMB_RS01200 0.49 +1.1
267,157 + AMB_RS01200 0.49 +0.0
267,157 + AMB_RS01200 0.49 +0.0
267,158 - AMB_RS01200 0.49 -1.5
267,202 + AMB_RS01200 0.59 +0.2
267,202 + AMB_RS01200 0.59 +1.9
267,202 + AMB_RS01200 0.59 +1.6
267,202 + AMB_RS01200 0.59 +1.0
267,202 + AMB_RS01200 0.59 -0.6
267,202 + AMB_RS01200 0.59 +3.0
267,203 - AMB_RS01200 0.59 +0.9
267,203 - AMB_RS01200 0.59 +1.7
267,203 - AMB_RS01200 0.59 -1.0
267,203 - AMB_RS01200 0.59 -0.2
267,203 - AMB_RS01200 0.59 +1.5
267,203 - AMB_RS01200 0.59 -1.0
267,223 + AMB_RS01200 0.63 +1.3
267,223 + AMB_RS01200 0.63 -1.5
267,223 + AMB_RS01200 0.63 +0.4
267,226 + AMB_RS01200 0.64 -0.5
267,226 + AMB_RS01200 0.64 -0.3
267,226 + AMB_RS01200 0.64 +1.2
267,226 + AMB_RS01200 0.64 +0.4
267,226 + AMB_RS01200 0.64 +2.7
267,226 + AMB_RS01200 0.64 +1.9
267,227 - AMB_RS01200 0.64 +1.1
267,227 - AMB_RS01200 0.64 +0.7
267,227 - AMB_RS01200 0.64 +1.7
267,227 - AMB_RS01200 0.64 +0.0
267,233 - AMB_RS01200 0.65 -1.0
267,233 - AMB_RS01200 0.65 +1.5
267,233 - AMB_RS01200 0.65 +2.2
267,233 - AMB_RS01200 0.65 +2.7

Or see this region's nucleotide sequence