Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01185

Experiment: carbonsource_all

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01175 and AMB_RS01180 overlap by 16 nucleotidesAMB_RS01180 and AMB_RS01185 are separated by 3 nucleotidesAMB_RS01185 and AMB_RS01190 are separated by 192 nucleotides AMB_RS01175: AMB_RS01175 - C4-dicarboxylate ABC transporter, at 260,935 to 262,242 _RS01175 AMB_RS01180: AMB_RS01180 - dihydrofolate reductase, at 262,227 to 262,748 _RS01180 AMB_RS01185: AMB_RS01185 - HD domain-containing protein, at 262,752 to 264,527 _RS01185 AMB_RS01190: AMB_RS01190 - UbiD family decarboxylase, at 264,720 to 266,234 _RS01190 Position (kb) 262 263 264 265Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 261.871 kb on + strand, within AMB_RS01175at 261.871 kb on + strand, within AMB_RS01175at 261.871 kb on + strand, within AMB_RS01175at 261.871 kb on + strand, within AMB_RS01175at 261.871 kb on + strand, within AMB_RS01175at 261.871 kb on + strand, within AMB_RS01175at 261.872 kb on - strand, within AMB_RS01175at 261.872 kb on - strand, within AMB_RS01175at 261.872 kb on - strand, within AMB_RS01175at 261.935 kb on - strand, within AMB_RS01175at 261.973 kb on + strand, within AMB_RS01175at 261.973 kb on + strand, within AMB_RS01175at 261.974 kb on - strand, within AMB_RS01175at 262.012 kb on - strand, within AMB_RS01175at 262.181 kb on - strandat 262.181 kb on - strandat 262.240 kb on + strandat 262.241 kb on - strandat 262.241 kb on - strandat 262.241 kb on - strandat 262.241 kb on - strandat 262.241 kb on - strandat 262.265 kb on + strandat 262.266 kb on - strandat 262.266 kb on - strandat 262.267 kb on + strandat 262.267 kb on + strandat 262.267 kb on + strandat 262.267 kb on + strandat 262.267 kb on + strandat 262.268 kb on - strandat 262.268 kb on - strandat 262.268 kb on - strandat 262.293 kb on - strand, within AMB_RS01180at 262.588 kb on + strand, within AMB_RS01180at 262.589 kb on - strand, within AMB_RS01180at 262.589 kb on - strand, within AMB_RS01180at 262.589 kb on - strand, within AMB_RS01180at 262.589 kb on - strand, within AMB_RS01180at 262.589 kb on - strand, within AMB_RS01180at 262.702 kb on + strandat 262.703 kb on - strandat 262.726 kb on + strandat 262.727 kb on - strandat 262.727 kb on - strandat 262.727 kb on - strandat 262.774 kb on + strandat 262.775 kb on - strandat 262.775 kb on - strandat 262.817 kb on - strandat 262.946 kb on - strand, within AMB_RS01185at 262.946 kb on - strand, within AMB_RS01185at 263.135 kb on + strand, within AMB_RS01185at 263.135 kb on + strand, within AMB_RS01185at 263.135 kb on + strand, within AMB_RS01185at 263.136 kb on - strand, within AMB_RS01185at 263.136 kb on - strand, within AMB_RS01185at 263.136 kb on - strand, within AMB_RS01185at 263.209 kb on + strand, within AMB_RS01185at 263.209 kb on + strand, within AMB_RS01185at 263.210 kb on - strand, within AMB_RS01185at 263.227 kb on + strand, within AMB_RS01185at 263.596 kb on + strand, within AMB_RS01185at 263.596 kb on + strand, within AMB_RS01185at 263.597 kb on - strand, within AMB_RS01185at 263.597 kb on - strand, within AMB_RS01185at 263.597 kb on - strand, within AMB_RS01185at 263.636 kb on + strand, within AMB_RS01185at 263.637 kb on - strand, within AMB_RS01185at 263.659 kb on + strand, within AMB_RS01185at 263.659 kb on + strand, within AMB_RS01185at 263.659 kb on + strand, within AMB_RS01185at 263.695 kb on + strand, within AMB_RS01185at 263.695 kb on + strand, within AMB_RS01185at 263.695 kb on + strand, within AMB_RS01185at 263.696 kb on - strand, within AMB_RS01185at 263.696 kb on - strand, within AMB_RS01185at 264.082 kb on + strand, within AMB_RS01185at 264.178 kb on + strand, within AMB_RS01185at 264.179 kb on - strand, within AMB_RS01185at 264.179 kb on - strand, within AMB_RS01185at 264.260 kb on + strand, within AMB_RS01185at 264.260 kb on + strand, within AMB_RS01185at 264.260 kb on + strand, within AMB_RS01185at 264.261 kb on - strand, within AMB_RS01185at 264.261 kb on - strand, within AMB_RS01185at 264.261 kb on - strand, within AMB_RS01185at 264.261 kb on - strand, within AMB_RS01185at 264.261 kb on - strand, within AMB_RS01185at 264.262 kb on + strand, within AMB_RS01185at 264.262 kb on + strand, within AMB_RS01185at 264.262 kb on + strand, within AMB_RS01185at 264.262 kb on + strand, within AMB_RS01185at 264.262 kb on + strand, within AMB_RS01185at 264.263 kb on - strand, within AMB_RS01185at 264.263 kb on - strand, within AMB_RS01185at 264.263 kb on - strand, within AMB_RS01185at 264.264 kb on + strand, within AMB_RS01185at 264.264 kb on + strand, within AMB_RS01185at 264.264 kb on + strand, within AMB_RS01185at 264.294 kb on - strand, within AMB_RS01185at 264.379 kb on + strandat 264.517 kb on - strandat 264.517 kb on - strandat 264.517 kb on - strandat 264.550 kb on + strandat 264.577 kb on + strandat 264.577 kb on + strandat 264.577 kb on + strandat 264.578 kb on - strandat 264.618 kb on - strandat 264.621 kb on + strandat 264.621 kb on + strandat 264.621 kb on + strandat 264.621 kb on + strandat 264.622 kb on - strandat 264.622 kb on - strandat 264.622 kb on - strandat 264.622 kb on - strandat 264.622 kb on - strandat 264.622 kb on - strandat 264.624 kb on + strandat 264.646 kb on + strandat 264.647 kb on - strandat 264.685 kb on + strandat 264.686 kb on - strandat 264.719 kb on + strandat 264.719 kb on + strandat 264.720 kb on - strandat 264.720 kb on - strandat 264.720 kb on - strandat 264.954 kb on - strand, within AMB_RS01190at 265.253 kb on + strand, within AMB_RS01190at 265.254 kb on - strand, within AMB_RS01190at 265.272 kb on + strand, within AMB_RS01190at 265.273 kb on - strand, within AMB_RS01190

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_all
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261,871 + AMB_RS01175 0.72 -0.4
261,871 + AMB_RS01175 0.72 +0.2
261,871 + AMB_RS01175 0.72 +3.4
261,871 + AMB_RS01175 0.72 -0.5
261,871 + AMB_RS01175 0.72 +0.6
261,871 + AMB_RS01175 0.72 +0.9
261,872 - AMB_RS01175 0.72 +3.7
261,872 - AMB_RS01175 0.72 +0.1
261,872 - AMB_RS01175 0.72 +0.5
261,935 - AMB_RS01175 0.76 +1.0
261,973 + AMB_RS01175 0.79 +0.0
261,973 + AMB_RS01175 0.79 +1.6
261,974 - AMB_RS01175 0.79 +1.5
262,012 - AMB_RS01175 0.82 +0.3
262,181 - -0.5
262,181 - +0.6
262,240 + -1.5
262,241 - -1.4
262,241 - +2.5
262,241 - +1.0
262,241 - +3.0
262,241 - +0.9
262,265 + +1.3
262,266 - +0.6
262,266 - +0.8
262,267 + +3.2
262,267 + -0.1
262,267 + -0.4
262,267 + -0.2
262,267 + +0.5
262,268 - +2.9
262,268 - +0.0
262,268 - -1.5
262,293 - AMB_RS01180 0.13 -0.2
262,588 + AMB_RS01180 0.69 +1.0
262,589 - AMB_RS01180 0.69 +0.4
262,589 - AMB_RS01180 0.69 -1.5
262,589 - AMB_RS01180 0.69 +1.0
262,589 - AMB_RS01180 0.69 +0.0
262,589 - AMB_RS01180 0.69 +0.0
262,702 + +0.2
262,703 - +1.4
262,726 + -0.2
262,727 - +0.5
262,727 - +0.0
262,727 - -2.9
262,774 + +1.6
262,775 - +1.0
262,775 - -3.7
262,817 - +2.9
262,946 - AMB_RS01185 0.11 +1.6
262,946 - AMB_RS01185 0.11 -0.2
263,135 + AMB_RS01185 0.22 +0.5
263,135 + AMB_RS01185 0.22 -1.0
263,135 + AMB_RS01185 0.22 +1.6
263,136 - AMB_RS01185 0.22 +0.6
263,136 - AMB_RS01185 0.22 +2.4
263,136 - AMB_RS01185 0.22 +1.1
263,209 + AMB_RS01185 0.26 +2.4
263,209 + AMB_RS01185 0.26 +2.2
263,210 - AMB_RS01185 0.26 +1.2
263,227 + AMB_RS01185 0.27 +1.3
263,596 + AMB_RS01185 0.48 +2.2
263,596 + AMB_RS01185 0.48 +0.0
263,597 - AMB_RS01185 0.48 -2.5
263,597 - AMB_RS01185 0.48 +0.0
263,597 - AMB_RS01185 0.48 +0.3
263,636 + AMB_RS01185 0.50 +1.8
263,637 - AMB_RS01185 0.50 +0.0
263,659 + AMB_RS01185 0.51 -1.0
263,659 + AMB_RS01185 0.51 +0.0
263,659 + AMB_RS01185 0.51 -0.2
263,695 + AMB_RS01185 0.53 -0.8
263,695 + AMB_RS01185 0.53 +0.3
263,695 + AMB_RS01185 0.53 +0.0
263,696 - AMB_RS01185 0.53 +0.4
263,696 - AMB_RS01185 0.53 +2.6
264,082 + AMB_RS01185 0.75 +0.2
264,178 + AMB_RS01185 0.80 -1.3
264,179 - AMB_RS01185 0.80 -0.4
264,179 - AMB_RS01185 0.80 +2.6
264,260 + AMB_RS01185 0.85 -1.0
264,260 + AMB_RS01185 0.85 +0.6
264,260 + AMB_RS01185 0.85 +2.4
264,261 - AMB_RS01185 0.85 -1.9
264,261 - AMB_RS01185 0.85 +1.1
264,261 - AMB_RS01185 0.85 -0.4
264,261 - AMB_RS01185 0.85 +0.0
264,261 - AMB_RS01185 0.85 -0.3
264,262 + AMB_RS01185 0.85 -1.0
264,262 + AMB_RS01185 0.85 -0.3
264,262 + AMB_RS01185 0.85 +0.6
264,262 + AMB_RS01185 0.85 -1.0
264,262 + AMB_RS01185 0.85 +1.2
264,263 - AMB_RS01185 0.85 -1.0
264,263 - AMB_RS01185 0.85 +3.9
264,263 - AMB_RS01185 0.85 +0.6
264,264 + AMB_RS01185 0.85 +1.0
264,264 + AMB_RS01185 0.85 +1.3
264,264 + AMB_RS01185 0.85 +0.2
264,294 - AMB_RS01185 0.87 -1.5
264,379 + +1.0
264,517 - +2.6
264,517 - +0.0
264,517 - -3.0
264,550 + -1.0
264,577 + -3.0
264,577 + +0.8
264,577 + +0.0
264,578 - +1.4
264,618 - +2.1
264,621 + +0.0
264,621 + -4.5
264,621 + +0.2
264,621 + +3.1
264,622 - +2.4
264,622 - +1.6
264,622 - -0.1
264,622 - +0.8
264,622 - -2.4
264,622 - +1.4
264,624 + -1.1
264,646 + -1.5
264,647 - +1.2
264,685 + +0.2
264,686 - -2.6
264,719 + +0.4
264,719 + -4.1
264,720 - -2.8
264,720 - -0.7
264,720 - +0.5
264,954 - AMB_RS01190 0.15 -3.1
265,253 + AMB_RS01190 0.35 -0.5
265,254 - AMB_RS01190 0.35 -3.0
265,272 + AMB_RS01190 0.36 +0.0
265,273 - AMB_RS01190 0.37 -1.0

Or see this region's nucleotide sequence