Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00745

Experiment: carbonsource_all

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS00735 and AMB_RS00740 overlap by 19 nucleotidesAMB_RS00740 and AMB_RS00745 overlap by 4 nucleotidesAMB_RS00745 and AMB_RS00750 are separated by 88 nucleotides AMB_RS00735: AMB_RS00735 - glycosyltransferase WbuB, at 167,871 to 169,130 _RS00735 AMB_RS00740: AMB_RS00740 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase, at 169,112 to 169,660 _RS00740 AMB_RS00745: AMB_RS00745 - MFS transporter, at 169,657 to 170,952 _RS00745 AMB_RS00750: AMB_RS00750 - NAD-dependent epimerase/dehydratase family protein, at 171,041 to 171,994 _RS00750 Position (kb) 169 170 171Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 169.878 kb on - strand, within AMB_RS00745at 169.878 kb on - strand, within AMB_RS00745at 170.481 kb on - strand, within AMB_RS00745at 170.481 kb on - strand, within AMB_RS00745at 170.845 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_all
remove
169,878 - AMB_RS00745 0.17 +3.9
169,878 - AMB_RS00745 0.17 +1.5
170,481 - AMB_RS00745 0.64 +0.8
170,481 - AMB_RS00745 0.64 -3.3
170,845 + +0.5

Or see this region's nucleotide sequence