Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00730

Experiment: carbonsource_all

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00720 and AMB_RS00725 overlap by 4 nucleotidesAMB_RS00725 and AMB_RS00730 are separated by 3 nucleotidesAMB_RS00730 and AMB_RS00735 are separated by 79 nucleotides AMB_RS00720: AMB_RS00720 - hypothetical protein, at 163,344 to 165,542 _RS00720 AMB_RS00725: AMB_RS00725 - glycosyltransferase family 9 protein, at 165,539 to 166,516 _RS00725 AMB_RS00730: AMB_RS00730 - nucleotide sugar dehydrogenase, at 166,520 to 167,791 _RS00730 AMB_RS00735: AMB_RS00735 - glycosyltransferase WbuB, at 167,871 to 169,130 _RS00735 Position (kb) 166 167 168Strain fitness (log2 ratio) -1 0 1at 165.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_all
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165,543 - -1.5

Or see this region's nucleotide sequence