Strain Fitness in Bosea sp. OAE506 around ABIE41_RS22020

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS22015 and ABIE41_RS22020 are separated by 2 nucleotidesABIE41_RS22020 and ABIE41_RS22025 are separated by 146 nucleotides ABIE41_RS22015: ABIE41_RS22015 - ABC transporter permease, at 4,525,927 to 4,526,835 _RS22015 ABIE41_RS22020: ABIE41_RS22020 - ABC transporter permease, at 4,526,838 to 4,527,779 _RS22020 ABIE41_RS22025: ABIE41_RS22025 - ABC transporter substrate-binding protein, at 4,527,926 to 4,529,527 _RS22025 Position (kb) 4526 4527 4528Strain fitness (log2 ratio) -2 -1 0 1 2at 4526.160 kb on + strand, within ABIE41_RS22015at 4526.161 kb on - strand, within ABIE41_RS22015at 4526.161 kb on - strand, within ABIE41_RS22015at 4526.161 kb on - strand, within ABIE41_RS22015at 4526.162 kb on + strand, within ABIE41_RS22015at 4526.162 kb on + strand, within ABIE41_RS22015at 4526.162 kb on + strand, within ABIE41_RS22015at 4526.162 kb on + strand, within ABIE41_RS22015at 4526.162 kb on + strand, within ABIE41_RS22015at 4526.162 kb on + strand, within ABIE41_RS22015at 4526.162 kb on + strand, within ABIE41_RS22015at 4526.162 kb on + strand, within ABIE41_RS22015at 4526.163 kb on - strand, within ABIE41_RS22015at 4526.163 kb on - strand, within ABIE41_RS22015at 4526.163 kb on - strand, within ABIE41_RS22015at 4526.163 kb on - strand, within ABIE41_RS22015at 4526.163 kb on - strand, within ABIE41_RS22015at 4526.163 kb on - strand, within ABIE41_RS22015at 4526.163 kb on - strand, within ABIE41_RS22015at 4526.261 kb on + strand, within ABIE41_RS22015at 4526.261 kb on + strand, within ABIE41_RS22015at 4526.262 kb on - strand, within ABIE41_RS22015at 4526.262 kb on - strand, within ABIE41_RS22015at 4526.262 kb on - strand, within ABIE41_RS22015at 4526.546 kb on + strand, within ABIE41_RS22015at 4526.561 kb on + strand, within ABIE41_RS22015at 4526.561 kb on + strand, within ABIE41_RS22015at 4526.561 kb on + strand, within ABIE41_RS22015at 4526.561 kb on + strand, within ABIE41_RS22015at 4526.562 kb on - strand, within ABIE41_RS22015at 4526.562 kb on - strand, within ABIE41_RS22015at 4526.562 kb on - strand, within ABIE41_RS22015at 4526.562 kb on - strand, within ABIE41_RS22015at 4526.562 kb on - strand, within ABIE41_RS22015at 4526.597 kb on + strand, within ABIE41_RS22015at 4526.597 kb on + strand, within ABIE41_RS22015at 4526.619 kb on + strand, within ABIE41_RS22015at 4526.620 kb on - strand, within ABIE41_RS22015at 4526.741 kb on + strand, within ABIE41_RS22015at 4526.842 kb on + strandat 4526.847 kb on + strandat 4526.868 kb on - strandat 4526.868 kb on - strandat 4526.868 kb on - strandat 4526.869 kb on + strandat 4526.869 kb on + strandat 4526.869 kb on + strandat 4526.869 kb on + strandat 4526.870 kb on - strandat 4526.870 kb on - strandat 4526.870 kb on - strandat 4526.870 kb on - strandat 4526.870 kb on - strandat 4526.902 kb on + strandat 4526.903 kb on - strandat 4526.903 kb on - strandat 4526.903 kb on - strandat 4526.944 kb on + strand, within ABIE41_RS22020at 4527.145 kb on + strand, within ABIE41_RS22020at 4527.145 kb on + strand, within ABIE41_RS22020at 4527.145 kb on + strand, within ABIE41_RS22020at 4527.145 kb on + strand, within ABIE41_RS22020at 4527.146 kb on - strand, within ABIE41_RS22020at 4527.146 kb on - strand, within ABIE41_RS22020at 4527.146 kb on - strand, within ABIE41_RS22020at 4527.205 kb on + strand, within ABIE41_RS22020at 4527.206 kb on - strand, within ABIE41_RS22020at 4527.280 kb on + strand, within ABIE41_RS22020at 4527.280 kb on + strand, within ABIE41_RS22020at 4527.281 kb on - strand, within ABIE41_RS22020at 4527.322 kb on + strand, within ABIE41_RS22020at 4527.322 kb on + strand, within ABIE41_RS22020at 4527.322 kb on + strand, within ABIE41_RS22020at 4527.323 kb on - strand, within ABIE41_RS22020at 4527.323 kb on - strand, within ABIE41_RS22020at 4527.323 kb on - strand, within ABIE41_RS22020at 4527.323 kb on - strand, within ABIE41_RS22020at 4527.599 kb on - strand, within ABIE41_RS22020at 4527.599 kb on - strand, within ABIE41_RS22020at 4527.697 kb on + strandat 4527.697 kb on + strandat 4527.697 kb on + strandat 4527.697 kb on + strandat 4527.697 kb on + strandat 4527.697 kb on + strandat 4527.698 kb on - strandat 4527.698 kb on - strandat 4528.011 kb on + strandat 4528.011 kb on + strandat 4528.011 kb on + strandat 4528.011 kb on + strandat 4528.011 kb on + strandat 4528.012 kb on - strandat 4528.188 kb on + strand, within ABIE41_RS22025at 4528.188 kb on + strand, within ABIE41_RS22025at 4528.189 kb on - strand, within ABIE41_RS22025at 4528.494 kb on + strand, within ABIE41_RS22025at 4528.495 kb on - strand, within ABIE41_RS22025at 4528.572 kb on + strand, within ABIE41_RS22025at 4528.572 kb on + strand, within ABIE41_RS22025at 4528.572 kb on + strand, within ABIE41_RS22025at 4528.572 kb on + strand, within ABIE41_RS22025at 4528.572 kb on + strand, within ABIE41_RS22025at 4528.572 kb on + strand, within ABIE41_RS22025at 4528.572 kb on + strand, within ABIE41_RS22025at 4528.572 kb on + strand, within ABIE41_RS22025at 4528.572 kb on + strand, within ABIE41_RS22025at 4528.572 kb on + strand, within ABIE41_RS22025at 4528.573 kb on - strand, within ABIE41_RS22025at 4528.573 kb on - strand, within ABIE41_RS22025at 4528.573 kb on - strand, within ABIE41_RS22025at 4528.573 kb on - strand, within ABIE41_RS22025at 4528.574 kb on - strand, within ABIE41_RS22025

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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4,526,160 + ABIE41_RS22015 0.26 -0.7
4,526,161 - ABIE41_RS22015 0.26 +0.1
4,526,161 - ABIE41_RS22015 0.26 -0.3
4,526,161 - ABIE41_RS22015 0.26 +0.7
4,526,162 + ABIE41_RS22015 0.26 -1.1
4,526,162 + ABIE41_RS22015 0.26 -0.9
4,526,162 + ABIE41_RS22015 0.26 -1.9
4,526,162 + ABIE41_RS22015 0.26 +0.7
4,526,162 + ABIE41_RS22015 0.26 +0.0
4,526,162 + ABIE41_RS22015 0.26 +0.1
4,526,162 + ABIE41_RS22015 0.26 +1.4
4,526,162 + ABIE41_RS22015 0.26 +0.3
4,526,163 - ABIE41_RS22015 0.26 -0.4
4,526,163 - ABIE41_RS22015 0.26 +0.1
4,526,163 - ABIE41_RS22015 0.26 +0.7
4,526,163 - ABIE41_RS22015 0.26 +0.5
4,526,163 - ABIE41_RS22015 0.26 +1.0
4,526,163 - ABIE41_RS22015 0.26 -1.9
4,526,163 - ABIE41_RS22015 0.26 +0.6
4,526,261 + ABIE41_RS22015 0.37 +0.2
4,526,261 + ABIE41_RS22015 0.37 +0.0
4,526,262 - ABIE41_RS22015 0.37 -0.5
4,526,262 - ABIE41_RS22015 0.37 -1.1
4,526,262 - ABIE41_RS22015 0.37 -0.5
4,526,546 + ABIE41_RS22015 0.68 -0.2
4,526,561 + ABIE41_RS22015 0.70 -0.7
4,526,561 + ABIE41_RS22015 0.70 -0.1
4,526,561 + ABIE41_RS22015 0.70 +0.2
4,526,561 + ABIE41_RS22015 0.70 +0.5
4,526,562 - ABIE41_RS22015 0.70 +1.0
4,526,562 - ABIE41_RS22015 0.70 -2.6
4,526,562 - ABIE41_RS22015 0.70 -1.0
4,526,562 - ABIE41_RS22015 0.70 -1.2
4,526,562 - ABIE41_RS22015 0.70 +0.1
4,526,597 + ABIE41_RS22015 0.74 -0.1
4,526,597 + ABIE41_RS22015 0.74 +0.3
4,526,619 + ABIE41_RS22015 0.76 +0.0
4,526,620 - ABIE41_RS22015 0.76 +0.0
4,526,741 + ABIE41_RS22015 0.90 +0.6
4,526,842 + +0.4
4,526,847 + +0.5
4,526,868 - -0.2
4,526,868 - -0.1
4,526,868 - -1.2
4,526,869 + +0.2
4,526,869 + -0.1
4,526,869 + -0.1
4,526,869 + -1.5
4,526,870 - -0.5
4,526,870 - -0.0
4,526,870 - -0.1
4,526,870 - -0.4
4,526,870 - -0.4
4,526,902 + -1.1
4,526,903 - -0.7
4,526,903 - +0.6
4,526,903 - +0.5
4,526,944 + ABIE41_RS22020 0.11 -0.1
4,527,145 + ABIE41_RS22020 0.33 -0.6
4,527,145 + ABIE41_RS22020 0.33 +1.7
4,527,145 + ABIE41_RS22020 0.33 +0.3
4,527,145 + ABIE41_RS22020 0.33 -0.1
4,527,146 - ABIE41_RS22020 0.33 +0.4
4,527,146 - ABIE41_RS22020 0.33 +0.5
4,527,146 - ABIE41_RS22020 0.33 +1.3
4,527,205 + ABIE41_RS22020 0.39 +0.9
4,527,206 - ABIE41_RS22020 0.39 +0.5
4,527,280 + ABIE41_RS22020 0.47 -1.1
4,527,280 + ABIE41_RS22020 0.47 +0.9
4,527,281 - ABIE41_RS22020 0.47 +0.5
4,527,322 + ABIE41_RS22020 0.51 -0.0
4,527,322 + ABIE41_RS22020 0.51 +0.9
4,527,322 + ABIE41_RS22020 0.51 +0.3
4,527,323 - ABIE41_RS22020 0.51 -1.3
4,527,323 - ABIE41_RS22020 0.51 +1.5
4,527,323 - ABIE41_RS22020 0.51 -1.5
4,527,323 - ABIE41_RS22020 0.51 +2.3
4,527,599 - ABIE41_RS22020 0.81 +0.5
4,527,599 - ABIE41_RS22020 0.81 +0.0
4,527,697 + -0.1
4,527,697 + -0.0
4,527,697 + +0.4
4,527,697 + -0.3
4,527,697 + -0.0
4,527,697 + -2.0
4,527,698 - +0.1
4,527,698 - -1.9
4,528,011 + -0.3
4,528,011 + -0.0
4,528,011 + -0.3
4,528,011 + -0.1
4,528,011 + -0.9
4,528,012 - +0.3
4,528,188 + ABIE41_RS22025 0.16 +0.1
4,528,188 + ABIE41_RS22025 0.16 -0.2
4,528,189 - ABIE41_RS22025 0.16 -0.7
4,528,494 + ABIE41_RS22025 0.35 -0.6
4,528,495 - ABIE41_RS22025 0.36 +2.5
4,528,572 + ABIE41_RS22025 0.40 -0.9
4,528,572 + ABIE41_RS22025 0.40 +0.5
4,528,572 + ABIE41_RS22025 0.40 +0.4
4,528,572 + ABIE41_RS22025 0.40 +0.0
4,528,572 + ABIE41_RS22025 0.40 -0.5
4,528,572 + ABIE41_RS22025 0.40 +0.2
4,528,572 + ABIE41_RS22025 0.40 -1.4
4,528,572 + ABIE41_RS22025 0.40 +0.4
4,528,572 + ABIE41_RS22025 0.40 +0.7
4,528,572 + ABIE41_RS22025 0.40 +0.3
4,528,573 - ABIE41_RS22025 0.40 -0.1
4,528,573 - ABIE41_RS22025 0.40 +0.1
4,528,573 - ABIE41_RS22025 0.40 +0.3
4,528,573 - ABIE41_RS22025 0.40 -0.8
4,528,574 - ABIE41_RS22025 0.40 -0.5

Or see this region's nucleotide sequence