Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS05155 and ABIE41_RS05160 are separated by 4 nucleotides ABIE41_RS05160 and ABIE41_RS05165 are separated by 10 nucleotides ABIE41_RS05165 and ABIE41_RS05170 are separated by 5 nucleotides ABIE41_RS05170 and ABIE41_RS05175 overlap by 4 nucleotides
ABIE41_RS05155: ABIE41_RS05155 - ATP-binding cassette domain-containing protein, at 1,069,282 to 1,070,046
_RS05155
ABIE41_RS05160: ABIE41_RS05160 - nucleoside hydrolase, at 1,070,051 to 1,070,986
_RS05160
ABIE41_RS05165: ABIE41_RS05165 - hypothetical protein, at 1,070,997 to 1,071,518
_RS05165
ABIE41_RS05170: ABIE41_RS05170 - ABC transporter ATP-binding protein, at 1,071,524 to 1,072,288
_RS05170
ABIE41_RS05175: ABIE41_RS05175 - iron ABC transporter permease, at 1,072,285 to 1,073,298
_RS05175
Position (kb) 1070
1071
1072 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1070.793 kb on + strand, within ABIE41_RS05160 at 1070.793 kb on + strand, within ABIE41_RS05160 at 1070.793 kb on + strand, within ABIE41_RS05160 at 1070.793 kb on + strand, within ABIE41_RS05160 at 1070.793 kb on + strand, within ABIE41_RS05160 at 1070.794 kb on - strand, within ABIE41_RS05160 at 1070.794 kb on - strand, within ABIE41_RS05160 at 1070.794 kb on - strand, within ABIE41_RS05160 at 1070.794 kb on - strand, within ABIE41_RS05160 at 1071.264 kb on + strand, within ABIE41_RS05165 at 1071.265 kb on - strand, within ABIE41_RS05165 at 1071.265 kb on - strand, within ABIE41_RS05165 at 1071.265 kb on - strand, within ABIE41_RS05165 at 1071.585 kb on + strand at 1071.585 kb on + strand at 1071.586 kb on - strand at 1071.586 kb on - strand at 1071.586 kb on - strand at 1071.586 kb on - strand at 1071.586 kb on - strand at 1071.586 kb on - strand at 1071.813 kb on + strand, within ABIE41_RS05170 at 1071.813 kb on + strand, within ABIE41_RS05170 at 1071.813 kb on + strand, within ABIE41_RS05170 at 1071.813 kb on + strand, within ABIE41_RS05170 at 1071.813 kb on + strand, within ABIE41_RS05170 at 1071.813 kb on + strand, within ABIE41_RS05170 at 1071.813 kb on + strand, within ABIE41_RS05170 at 1071.813 kb on + strand, within ABIE41_RS05170 at 1071.813 kb on + strand, within ABIE41_RS05170 at 1071.814 kb on - strand, within ABIE41_RS05170 at 1071.883 kb on - strand, within ABIE41_RS05170 at 1072.050 kb on + strand, within ABIE41_RS05170 at 1072.050 kb on + strand, within ABIE41_RS05170 at 1072.051 kb on - strand, within ABIE41_RS05170 at 1072.051 kb on - strand, within ABIE41_RS05170 at 1072.260 kb on + strand at 1072.260 kb on + strand at 1072.260 kb on + strand at 1072.260 kb on + strand at 1072.261 kb on - strand at 1072.261 kb on - strand at 1072.261 kb on - strand at 1072.416 kb on - strand, within ABIE41_RS05175 at 1072.416 kb on - strand, within ABIE41_RS05175 at 1072.416 kb on - strand, within ABIE41_RS05175
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 1,070,793 + ABIE41_RS05160 0.79 -1.4 1,070,793 + ABIE41_RS05160 0.79 -0.1 1,070,793 + ABIE41_RS05160 0.79 -0.1 1,070,793 + ABIE41_RS05160 0.79 +0.0 1,070,793 + ABIE41_RS05160 0.79 -0.2 1,070,794 - ABIE41_RS05160 0.79 -2.1 1,070,794 - ABIE41_RS05160 0.79 -0.3 1,070,794 - ABIE41_RS05160 0.79 -0.4 1,070,794 - ABIE41_RS05160 0.79 +0.6 1,071,264 + ABIE41_RS05165 0.51 +0.2 1,071,265 - ABIE41_RS05165 0.51 -1.8 1,071,265 - ABIE41_RS05165 0.51 +0.3 1,071,265 - ABIE41_RS05165 0.51 -0.4 1,071,585 + +0.2 1,071,585 + +1.2 1,071,586 - +2.0 1,071,586 - -0.8 1,071,586 - -0.3 1,071,586 - -0.4 1,071,586 - +1.2 1,071,586 - -1.1 1,071,813 + ABIE41_RS05170 0.38 +0.3 1,071,813 + ABIE41_RS05170 0.38 +0.1 1,071,813 + ABIE41_RS05170 0.38 +0.1 1,071,813 + ABIE41_RS05170 0.38 +0.7 1,071,813 + ABIE41_RS05170 0.38 -0.4 1,071,813 + ABIE41_RS05170 0.38 +0.6 1,071,813 + ABIE41_RS05170 0.38 -0.9 1,071,813 + ABIE41_RS05170 0.38 -1.0 1,071,813 + ABIE41_RS05170 0.38 +1.2 1,071,814 - ABIE41_RS05170 0.38 +0.6 1,071,883 - ABIE41_RS05170 0.47 -0.6 1,072,050 + ABIE41_RS05170 0.69 -0.4 1,072,050 + ABIE41_RS05170 0.69 -0.2 1,072,051 - ABIE41_RS05170 0.69 +1.2 1,072,051 - ABIE41_RS05170 0.69 +0.0 1,072,260 + +0.1 1,072,260 + -0.6 1,072,260 + -1.0 1,072,260 + -1.6 1,072,261 - +0.6 1,072,261 - -0.4 1,072,261 - -0.3 1,072,416 - ABIE41_RS05175 0.13 +0.1 1,072,416 - ABIE41_RS05175 0.13 +0.4 1,072,416 - ABIE41_RS05175 0.13 -2.0
Or see this region's nucleotide sequence