Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01345 and ABIE41_RS01350 are separated by 184 nucleotides ABIE41_RS01350 and ABIE41_RS01355 are separated by 22 nucleotides ABIE41_RS01355 and ABIE41_RS01360 are separated by 248 nucleotides
ABIE41_RS01345: ABIE41_RS01345 - septum site-determining protein MinC, at 266,734 to 267,468
_RS01345
ABIE41_RS01350: ABIE41_RS01350 - hypothetical protein, at 267,653 to 267,892
_RS01350
ABIE41_RS01355: ABIE41_RS01355 - aldolase/citrate lyase family protein, at 267,915 to 268,712
_RS01355
ABIE41_RS01360: ABIE41_RS01360 - sialic acid TRAP transporter substrate-binding protein SiaP, at 268,961 to 269,935
_RS01360
Position (kb) 267
268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 266.933 kb on + strand, within ABIE41_RS01345 at 266.933 kb on + strand, within ABIE41_RS01345 at 267.416 kb on + strand at 267.417 kb on - strand at 267.417 kb on - strand at 267.417 kb on - strand at 267.521 kb on + strand at 267.522 kb on - strand at 267.522 kb on - strand at 267.891 kb on - strand at 268.138 kb on + strand, within ABIE41_RS01355 at 268.487 kb on - strand, within ABIE41_RS01355 at 268.825 kb on + strand at 268.826 kb on - strand at 268.826 kb on - strand at 269.051 kb on + strand at 269.051 kb on + strand at 269.051 kb on + strand at 269.051 kb on + strand at 269.051 kb on + strand at 269.052 kb on - strand at 269.052 kb on - strand at 269.057 kb on + strand at 269.058 kb on - strand at 269.132 kb on + strand, within ABIE41_RS01360 at 269.133 kb on - strand, within ABIE41_RS01360 at 269.133 kb on - strand, within ABIE41_RS01360 at 269.147 kb on + strand, within ABIE41_RS01360 at 269.147 kb on + strand, within ABIE41_RS01360 at 269.148 kb on - strand, within ABIE41_RS01360 at 269.270 kb on + strand, within ABIE41_RS01360 at 269.270 kb on + strand, within ABIE41_RS01360 at 269.270 kb on + strand, within ABIE41_RS01360 at 269.270 kb on + strand, within ABIE41_RS01360 at 269.271 kb on - strand, within ABIE41_RS01360 at 269.271 kb on - strand, within ABIE41_RS01360 at 269.271 kb on - strand, within ABIE41_RS01360 at 269.312 kb on + strand, within ABIE41_RS01360 at 269.313 kb on - strand, within ABIE41_RS01360 at 269.331 kb on - strand, within ABIE41_RS01360 at 269.331 kb on - strand, within ABIE41_RS01360 at 269.331 kb on - strand, within ABIE41_RS01360 at 269.351 kb on + strand, within ABIE41_RS01360 at 269.352 kb on - strand, within ABIE41_RS01360 at 269.390 kb on + strand, within ABIE41_RS01360 at 269.390 kb on + strand, within ABIE41_RS01360 at 269.483 kb on + strand, within ABIE41_RS01360 at 269.483 kb on + strand, within ABIE41_RS01360 at 269.483 kb on + strand, within ABIE41_RS01360 at 269.483 kb on + strand, within ABIE41_RS01360 at 269.483 kb on + strand, within ABIE41_RS01360 at 269.483 kb on + strand, within ABIE41_RS01360 at 269.484 kb on - strand, within ABIE41_RS01360 at 269.484 kb on - strand, within ABIE41_RS01360 at 269.484 kb on - strand, within ABIE41_RS01360 at 269.484 kb on - strand, within ABIE41_RS01360 at 269.485 kb on + strand, within ABIE41_RS01360 at 269.485 kb on + strand, within ABIE41_RS01360 at 269.486 kb on - strand, within ABIE41_RS01360 at 269.486 kb on - strand, within ABIE41_RS01360 at 269.486 kb on - strand, within ABIE41_RS01360 at 269.486 kb on - strand, within ABIE41_RS01360 at 269.543 kb on + strand, within ABIE41_RS01360 at 269.544 kb on - strand, within ABIE41_RS01360
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 266,933 + ABIE41_RS01345 0.27 +0.2 266,933 + ABIE41_RS01345 0.27 +0.8 267,416 + +0.1 267,417 - -0.8 267,417 - +0.0 267,417 - +0.1 267,521 + -0.8 267,522 - -0.2 267,522 - +0.1 267,891 - -0.1 268,138 + ABIE41_RS01355 0.28 -0.4 268,487 - ABIE41_RS01355 0.72 -0.3 268,825 + +0.9 268,826 - +0.9 268,826 - -0.9 269,051 + +0.8 269,051 + +0.0 269,051 + +0.6 269,051 + +0.4 269,051 + -0.3 269,052 - -2.1 269,052 - -1.2 269,057 + -0.4 269,058 - +0.9 269,132 + ABIE41_RS01360 0.18 +1.2 269,133 - ABIE41_RS01360 0.18 -0.1 269,133 - ABIE41_RS01360 0.18 +0.9 269,147 + ABIE41_RS01360 0.19 +0.8 269,147 + ABIE41_RS01360 0.19 +1.1 269,148 - ABIE41_RS01360 0.19 +0.4 269,270 + ABIE41_RS01360 0.32 +0.2 269,270 + ABIE41_RS01360 0.32 -0.0 269,270 + ABIE41_RS01360 0.32 -0.2 269,270 + ABIE41_RS01360 0.32 +2.1 269,271 - ABIE41_RS01360 0.32 +2.9 269,271 - ABIE41_RS01360 0.32 +0.4 269,271 - ABIE41_RS01360 0.32 -0.6 269,312 + ABIE41_RS01360 0.36 +0.9 269,313 - ABIE41_RS01360 0.36 +0.3 269,331 - ABIE41_RS01360 0.38 -0.1 269,331 - ABIE41_RS01360 0.38 -0.5 269,331 - ABIE41_RS01360 0.38 -0.1 269,351 + ABIE41_RS01360 0.40 -0.5 269,352 - ABIE41_RS01360 0.40 +2.5 269,390 + ABIE41_RS01360 0.44 -2.2 269,390 + ABIE41_RS01360 0.44 +0.9 269,483 + ABIE41_RS01360 0.54 -3.3 269,483 + ABIE41_RS01360 0.54 -1.0 269,483 + ABIE41_RS01360 0.54 -0.3 269,483 + ABIE41_RS01360 0.54 +0.4 269,483 + ABIE41_RS01360 0.54 -0.3 269,483 + ABIE41_RS01360 0.54 +0.0 269,484 - ABIE41_RS01360 0.54 +0.7 269,484 - ABIE41_RS01360 0.54 +1.0 269,484 - ABIE41_RS01360 0.54 +0.3 269,484 - ABIE41_RS01360 0.54 +0.6 269,485 + ABIE41_RS01360 0.54 -0.1 269,485 + ABIE41_RS01360 0.54 -0.5 269,486 - ABIE41_RS01360 0.54 -0.1 269,486 - ABIE41_RS01360 0.54 -0.2 269,486 - ABIE41_RS01360 0.54 -0.3 269,486 - ABIE41_RS01360 0.54 +0.9 269,543 + ABIE41_RS01360 0.60 +0.5 269,544 - ABIE41_RS01360 0.60 -0.8
Or see this region's nucleotide sequence