Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11475

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11470 and ABID97_RS11475 are separated by 319 nucleotidesABID97_RS11475 and ABID97_RS11480 overlap by 63 nucleotidesABID97_RS11480 and ABID97_RS11485 are separated by 393 nucleotides ABID97_RS11470: ABID97_RS11470 - zinc-binding dehydrogenase, at 2,366,182 to 2,367,309 _RS11470 ABID97_RS11475: ABID97_RS11475 - AAA family ATPase, at 2,367,629 to 2,368,668 _RS11475 ABID97_RS11480: ABID97_RS11480 - hypothetical protein, at 2,368,606 to 2,368,929 _RS11480 ABID97_RS11485: ABID97_RS11485 - tannase/feruloyl esterase family alpha/beta hydrolase, at 2,369,323 to 2,371,095 _RS11485 Position (kb) 2367 2368 2369Strain fitness (log2 ratio) -1 0 1at 2366.736 kb on + strand, within ABID97_RS11470at 2367.022 kb on + strand, within ABID97_RS11470at 2367.022 kb on + strand, within ABID97_RS11470at 2367.023 kb on - strand, within ABID97_RS11470at 2367.029 kb on - strand, within ABID97_RS11470at 2367.277 kb on + strandat 2367.627 kb on + strandat 2367.647 kb on - strandat 2367.780 kb on + strand, within ABID97_RS11475at 2368.446 kb on + strand, within ABID97_RS11475at 2368.552 kb on + strand, within ABID97_RS11475at 2368.608 kb on - strandat 2368.748 kb on + strand, within ABID97_RS11480at 2368.751 kb on + strand, within ABID97_RS11480at 2368.899 kb on - strandat 2368.968 kb on - strandat 2369.217 kb on - strandat 2369.656 kb on + strand, within ABID97_RS11485at 2369.660 kb on + strand, within ABID97_RS11485at 2369.660 kb on + strand, within ABID97_RS11485at 2369.661 kb on - strand, within ABID97_RS11485

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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2,366,736 + ABID97_RS11470 0.49 +0.0
2,367,022 + ABID97_RS11470 0.74 +1.1
2,367,022 + ABID97_RS11470 0.74 -0.7
2,367,023 - ABID97_RS11470 0.75 -0.4
2,367,029 - ABID97_RS11470 0.75 -0.6
2,367,277 + +0.3
2,367,627 + +1.1
2,367,647 - -0.1
2,367,780 + ABID97_RS11475 0.15 -0.4
2,368,446 + ABID97_RS11475 0.79 -0.6
2,368,552 + ABID97_RS11475 0.89 -0.7
2,368,608 - -0.6
2,368,748 + ABID97_RS11480 0.44 +0.4
2,368,751 + ABID97_RS11480 0.45 -0.7
2,368,899 - -0.3
2,368,968 - -0.4
2,369,217 - -0.2
2,369,656 + ABID97_RS11485 0.19 +0.2
2,369,660 + ABID97_RS11485 0.19 +0.3
2,369,660 + ABID97_RS11485 0.19 -0.0
2,369,661 - ABID97_RS11485 0.19 -0.2

Or see this region's nucleotide sequence