Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09735

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09720 and ABID97_RS09725 are separated by 2 nucleotidesABID97_RS09725 and ABID97_RS09730 overlap by 8 nucleotidesABID97_RS09730 and ABID97_RS09735 overlap by 4 nucleotidesABID97_RS09735 and ABID97_RS09740 are separated by 82 nucleotidesABID97_RS09740 and ABID97_RS09745 are separated by 1 nucleotidesABID97_RS09745 and ABID97_RS09750 overlap by 4 nucleotides ABID97_RS09720: ABID97_RS09720 - hypothetical protein, at 2,029,753 to 2,030,421 _RS09720 ABID97_RS09725: ABID97_RS09725 - phage head closure protein, at 2,030,424 to 2,030,798 _RS09725 ABID97_RS09730: ABID97_RS09730 - HK97-gp10 family putative phage morphogenesis protein, at 2,030,791 to 2,031,228 _RS09730 ABID97_RS09735: ABID97_RS09735 - DUF3168 domain-containing protein, at 2,031,225 to 2,031,590 _RS09735 ABID97_RS09740: ABID97_RS09740 - phage tail tube protein, at 2,031,673 to 2,032,323 _RS09740 ABID97_RS09745: ABID97_RS09745 - hypothetical protein, at 2,032,325 to 2,032,552 _RS09745 ABID97_RS09750: ABID97_RS09750 - hypothetical protein, at 2,032,549 to 2,032,911 _RS09750 Position (kb) 2031 2032Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2030.559 kb on + strand, within ABID97_RS09725at 2030.559 kb on + strand, within ABID97_RS09725at 2030.560 kb on - strand, within ABID97_RS09725at 2030.601 kb on + strand, within ABID97_RS09725at 2030.601 kb on + strand, within ABID97_RS09725at 2030.796 kb on + strandat 2030.796 kb on + strandat 2030.796 kb on + strandat 2030.797 kb on - strandat 2031.106 kb on + strand, within ABID97_RS09730at 2031.225 kb on - strandat 2031.246 kb on + strandat 2031.247 kb on - strandat 2031.423 kb on + strand, within ABID97_RS09735at 2031.423 kb on + strand, within ABID97_RS09735at 2031.423 kb on + strand, within ABID97_RS09735at 2031.423 kb on + strand, within ABID97_RS09735at 2031.424 kb on - strand, within ABID97_RS09735at 2031.526 kb on - strand, within ABID97_RS09735at 2031.663 kb on + strandat 2031.868 kb on + strand, within ABID97_RS09740at 2031.868 kb on + strand, within ABID97_RS09740at 2031.869 kb on - strand, within ABID97_RS09740at 2031.938 kb on - strand, within ABID97_RS09740at 2032.106 kb on - strand, within ABID97_RS09740

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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2,030,559 + ABID97_RS09725 0.36 -0.2
2,030,559 + ABID97_RS09725 0.36 -0.3
2,030,560 - ABID97_RS09725 0.36 -0.4
2,030,601 + ABID97_RS09725 0.47 +0.5
2,030,601 + ABID97_RS09725 0.47 -0.3
2,030,796 + -0.1
2,030,796 + -1.2
2,030,796 + -0.1
2,030,797 - -0.2
2,031,106 + ABID97_RS09730 0.72 -0.6
2,031,225 - +0.0
2,031,246 + +0.7
2,031,247 - -0.4
2,031,423 + ABID97_RS09735 0.54 -0.5
2,031,423 + ABID97_RS09735 0.54 -0.9
2,031,423 + ABID97_RS09735 0.54 -2.6
2,031,423 + ABID97_RS09735 0.54 -0.2
2,031,424 - ABID97_RS09735 0.54 -0.5
2,031,526 - ABID97_RS09735 0.82 -0.5
2,031,663 + -0.1
2,031,868 + ABID97_RS09740 0.30 +0.3
2,031,868 + ABID97_RS09740 0.30 +0.2
2,031,869 - ABID97_RS09740 0.30 +3.7
2,031,938 - ABID97_RS09740 0.41 +0.5
2,032,106 - ABID97_RS09740 0.67 +0.1

Or see this region's nucleotide sequence