Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03075 and ABID97_RS03080 overlap by 4 nucleotides ABID97_RS03080 and ABID97_RS03085 are separated by 155 nucleotides
ABID97_RS03075: ABID97_RS03075 - branched-chain amino acid ABC transporter permease, at 622,096 to 623,085
_RS03075
ABID97_RS03080: ABID97_RS03080 - branched-chain amino acid ABC transporter permease, at 623,082 to 623,954
_RS03080
ABID97_RS03085: ABID97_RS03085 - ABC transporter substrate-binding protein, at 624,110 to 625,282
_RS03085
Position (kb) 623
624 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 622.440 kb on - strand, within ABID97_RS03075 at 622.440 kb on - strand, within ABID97_RS03075 at 622.545 kb on - strand, within ABID97_RS03075 at 622.545 kb on - strand, within ABID97_RS03075 at 622.628 kb on + strand, within ABID97_RS03075 at 622.628 kb on + strand, within ABID97_RS03075 at 622.628 kb on + strand, within ABID97_RS03075 at 622.628 kb on + strand, within ABID97_RS03075 at 622.629 kb on - strand, within ABID97_RS03075 at 622.634 kb on + strand, within ABID97_RS03075 at 622.634 kb on + strand, within ABID97_RS03075 at 622.634 kb on + strand, within ABID97_RS03075 at 622.634 kb on + strand, within ABID97_RS03075 at 622.635 kb on - strand, within ABID97_RS03075 at 622.635 kb on - strand, within ABID97_RS03075 at 622.635 kb on - strand, within ABID97_RS03075 at 622.635 kb on - strand, within ABID97_RS03075 at 622.766 kb on + strand, within ABID97_RS03075 at 622.766 kb on + strand, within ABID97_RS03075 at 622.848 kb on - strand, within ABID97_RS03075 at 622.862 kb on + strand, within ABID97_RS03075 at 622.863 kb on - strand, within ABID97_RS03075 at 622.971 kb on - strand, within ABID97_RS03075 at 622.971 kb on - strand, within ABID97_RS03075 at 623.056 kb on - strand at 623.143 kb on + strand at 623.476 kb on + strand, within ABID97_RS03080 at 623.477 kb on - strand, within ABID97_RS03080 at 623.477 kb on - strand, within ABID97_RS03080 at 623.477 kb on - strand, within ABID97_RS03080 at 623.534 kb on - strand, within ABID97_RS03080 at 623.650 kb on + strand, within ABID97_RS03080 at 623.650 kb on + strand, within ABID97_RS03080 at 623.651 kb on - strand, within ABID97_RS03080 at 623.686 kb on + strand, within ABID97_RS03080 at 623.692 kb on + strand, within ABID97_RS03080 at 623.693 kb on - strand, within ABID97_RS03080 at 623.719 kb on + strand, within ABID97_RS03080 at 623.719 kb on + strand, within ABID97_RS03080 at 623.806 kb on + strand, within ABID97_RS03080 at 623.806 kb on + strand, within ABID97_RS03080 at 623.806 kb on + strand, within ABID97_RS03080 at 623.807 kb on - strand, within ABID97_RS03080 at 623.807 kb on - strand, within ABID97_RS03080 at 623.807 kb on - strand, within ABID97_RS03080 at 623.821 kb on + strand, within ABID97_RS03080 at 623.822 kb on + strand, within ABID97_RS03080 at 623.822 kb on - strand, within ABID97_RS03080 at 624.111 kb on + strand at 624.198 kb on + strand at 624.198 kb on + strand at 624.198 kb on + strand at 624.198 kb on + strand at 624.199 kb on - strand at 624.199 kb on - strand at 624.199 kb on - strand at 624.369 kb on + strand, within ABID97_RS03085 at 624.369 kb on + strand, within ABID97_RS03085 at 624.369 kb on + strand, within ABID97_RS03085 at 624.403 kb on - strand, within ABID97_RS03085 at 624.564 kb on + strand, within ABID97_RS03085 at 624.564 kb on + strand, within ABID97_RS03085 at 624.609 kb on + strand, within ABID97_RS03085 at 624.610 kb on - strand, within ABID97_RS03085 at 624.610 kb on - strand, within ABID97_RS03085
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 622,440 - ABID97_RS03075 0.35 +0.3 622,440 - ABID97_RS03075 0.35 -0.6 622,545 - ABID97_RS03075 0.45 -0.4 622,545 - ABID97_RS03075 0.45 +0.2 622,628 + ABID97_RS03075 0.54 +0.6 622,628 + ABID97_RS03075 0.54 -1.2 622,628 + ABID97_RS03075 0.54 +0.1 622,628 + ABID97_RS03075 0.54 +4.4 622,629 - ABID97_RS03075 0.54 +0.0 622,634 + ABID97_RS03075 0.54 -0.5 622,634 + ABID97_RS03075 0.54 +0.1 622,634 + ABID97_RS03075 0.54 -0.2 622,634 + ABID97_RS03075 0.54 -0.1 622,635 - ABID97_RS03075 0.54 +0.1 622,635 - ABID97_RS03075 0.54 -0.4 622,635 - ABID97_RS03075 0.54 -0.4 622,635 - ABID97_RS03075 0.54 -0.2 622,766 + ABID97_RS03075 0.68 +0.4 622,766 + ABID97_RS03075 0.68 +0.5 622,848 - ABID97_RS03075 0.76 -0.1 622,862 + ABID97_RS03075 0.77 -2.2 622,863 - ABID97_RS03075 0.77 +0.2 622,971 - ABID97_RS03075 0.88 +0.2 622,971 - ABID97_RS03075 0.88 +0.5 623,056 - +0.1 623,143 + -0.1 623,476 + ABID97_RS03080 0.45 +0.2 623,477 - ABID97_RS03080 0.45 -0.3 623,477 - ABID97_RS03080 0.45 -0.1 623,477 - ABID97_RS03080 0.45 -0.2 623,534 - ABID97_RS03080 0.52 -0.1 623,650 + ABID97_RS03080 0.65 -0.2 623,650 + ABID97_RS03080 0.65 +0.1 623,651 - ABID97_RS03080 0.65 +0.1 623,686 + ABID97_RS03080 0.69 -0.8 623,692 + ABID97_RS03080 0.70 +0.7 623,693 - ABID97_RS03080 0.70 -0.3 623,719 + ABID97_RS03080 0.73 -0.1 623,719 + ABID97_RS03080 0.73 -1.4 623,806 + ABID97_RS03080 0.83 -0.0 623,806 + ABID97_RS03080 0.83 +0.2 623,806 + ABID97_RS03080 0.83 -0.2 623,807 - ABID97_RS03080 0.83 +0.0 623,807 - ABID97_RS03080 0.83 +4.8 623,807 - ABID97_RS03080 0.83 -1.3 623,821 + ABID97_RS03080 0.85 +1.6 623,822 + ABID97_RS03080 0.85 -0.3 623,822 - ABID97_RS03080 0.85 -0.5 624,111 + +0.3 624,198 + -0.0 624,198 + +0.2 624,198 + -1.0 624,198 + +0.1 624,199 - +0.5 624,199 - -0.2 624,199 - +0.3 624,369 + ABID97_RS03085 0.22 -0.8 624,369 + ABID97_RS03085 0.22 -1.0 624,369 + ABID97_RS03085 0.22 +0.2 624,403 - ABID97_RS03085 0.25 +0.4 624,564 + ABID97_RS03085 0.39 -0.7 624,564 + ABID97_RS03085 0.39 +0.0 624,609 + ABID97_RS03085 0.43 -0.1 624,610 - ABID97_RS03085 0.43 +0.3 624,610 - ABID97_RS03085 0.43 -0.4
Or see this region's nucleotide sequence