Strain Fitness in Escherichia coli BW25113 around b4500

Experiment: L-Malic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C)
2,326,893	+				+0.7
2,326,954	+	yfaQ	b2226	0.48	+0.6
2,326,954	+	yfaQ	b2226	0.48	+0.0
2,326,954	+	yfaQ	b2226	0.48	+0.6
2,327,035	+	yfaQ	b2226	0.52	-0.1
2,327,053	-	yfaQ	b2226	0.54	+0.1
2,327,053	-	yfaQ	b2226	0.54	+1.1
2,327,135	+	yfaQ	b2226	0.58	-2.6
2,327,135	+	yfaQ	b2226	0.58	-0.8
2,327,178	-	yfaQ	b2226	0.61	+0.1
2,327,244	+	yfaQ	b2226	0.65	-0.1
2,327,256	-	yfaQ	b2226	0.66	+0.5
2,327,266	-	yfaQ	b2226	0.66	-0.1
2,327,294	-	yfaQ	b2226	0.68	+0.9
2,327,394	+	yfaQ	b2226	0.74	+0.2
2,327,394	+	yfaQ	b2226	0.74	+0.2
2,327,444	-	yfaQ	b2226	0.77	+0.3
2,327,450	-	yfaQ	b2226	0.78	+1.3
2,327,505	-	yfaQ	b2226	0.81	+1.0
2,327,505	-	yfaQ	b2226	0.81	-0.0
2,327,529	+	yfaQ	b2226	0.82	+0.5
2,327,552	-	yfaQ	b2226	0.84	-0.8
2,327,587	-	yfaQ	b2226	0.86	-1.4
2,327,649	-	yfaQ	b2226	0.90	+0.1
2,327,667	+				+1.0
2,327,798	+				-0.0
2,327,821	+				+0.2
2,327,878	+				-1.9
2,327,878	+				-1.3
2,327,889	-				-1.1
2,327,981	+				+0.2
2,327,986	+				+0.5
2,327,986	+				-0.2
2,327,986	+				-1.0
2,328,074	+				-0.3
2,328,155	-				-1.0
2,328,155	-				-0.4
2,328,215	+				+0.2
2,328,229	-				+0.2
2,328,229	-				+0.5
2,328,256	-				-1.0
2,328,314	+	yfaS	b4500	0.11	-2.8
2,328,389	-	yfaS	b4500	0.12	-0.2
2,328,389	-	yfaS	b4500	0.12	-0.5
2,328,518	+	yfaS	b4500	0.15	+0.2
2,328,538	-	yfaS	b4500	0.16	+0.5
2,328,561	+	yfaS	b4500	0.16	+0.7
2,328,561	+	yfaS	b4500	0.16	+0.4
2,328,593	+	yfaS	b4500	0.17	+0.3
2,328,631	+	yfaS	b4500	0.18	+0.6
2,328,673	+	yfaS	b4500	0.19	+0.2
2,328,851	+	yfaS	b4500	0.22	+0.9
2,328,888	-	yfaS	b4500	0.23	+0.7
2,329,071	+	yfaS	b4500	0.27	+0.5
2,329,078	-	yfaS	b4500	0.27	+0.7
2,329,084	-	yfaS	b4500	0.27	+0.9
2,329,230	-	yfaS	b4500	0.31	+0.3
2,329,372	-	yfaS	b4500	0.34	+0.1
2,329,372	-	yfaS	b4500	0.34	+0.2
2,329,462	-	yfaS	b4500	0.36	-1.0
2,329,755	-	yfaS	b4500	0.42	-0.2
2,329,786	+	yfaS	b4500	0.43	+0.5
2,329,786	+	yfaS	b4500	0.43	+1.1
2,329,794	-	yfaS	b4500	0.43	+0.6
2,329,925	-	yfaS	b4500	0.46	+0.3
2,329,926	+	yfaS	b4500	0.46	+0.3
2,329,926	+	yfaS	b4500	0.46	+1.0
2,329,959	+	yfaS	b4500	0.46	+0.1
2,330,190	-	yfaS	b4500	0.51	-0.0
2,330,190	-	yfaS	b4500	0.51	+0.3
2,330,192	-	yfaS	b4500	0.52	-0.8
2,330,200	+	yfaS	b4500	0.52	+0.9
2,330,211	-	yfaS	b4500	0.52	-1.5
2,330,412	-	yfaS	b4500	0.56	+0.5
2,330,418	+	yfaS	b4500	0.56	+0.6
2,330,418	+	yfaS	b4500	0.56	-0.8
2,330,421	-	yfaS	b4500	0.56	-0.2
2,330,421	-	yfaS	b4500	0.56	+0.3
2,330,455	-	yfaS	b4500	0.57	+1.2
2,330,464	+	yfaS	b4500	0.57	+0.0
2,330,469	-	yfaS	b4500	0.58	+0.6
2,330,536	-	yfaS	b4500	0.59	+1.0
2,330,536	-	yfaS	b4500	0.59	+0.1
2,330,606	-	yfaS	b4500	0.60	+1.5
2,330,606	-	yfaS	b4500	0.60	-0.9
2,330,735	+	yfaS	b4500	0.63	+0.3
2,331,152	+	yfaS	b4500	0.72	+0.7
2,331,152	+	yfaS	b4500	0.72	+0.9
2,331,221	+	yfaS	b4500	0.74	-1.3
2,331,221	+	yfaS	b4500	0.74	-1.7
2,331,288	+	yfaS	b4500	0.75	+0.3
2,331,335	+	yfaS	b4500	0.76	+0.4
2,331,335	+	yfaS	b4500	0.76	+0.6
2,331,335	+	yfaS	b4500	0.76	+1.1
2,331,335	+	yfaS	b4500	0.76	+1.6
2,331,457	+	yfaS	b4500	0.79	-0.0
2,331,467	+	yfaS	b4500	0.79	-0.3
2,331,498	-	yfaS	b4500	0.80	-1.1
2,331,508	+	yfaS	b4500	0.80	-2.2
2,331,509	-	yfaS	b4500	0.80	+0.6
2,331,564	-	yfaS	b4500	0.81	+1.0
2,331,593	+	yfaS	b4500	0.82	+0.5
2,331,695	-	yfaS	b4500	0.84	-0.5
2,331,711	+	yfaS	b4500	0.84	+0.3
2,332,014	+				-0.6
2,332,020	+				+1.0
2,332,020	+				+0.2
2,332,048	-				-0.1
2,332,048	-				+1.7
2,332,166	+				+0.6
2,332,169	-				-0.8
2,332,169	-				-0.5
2,332,223	+				+0.1
2,332,230	-				-0.1
2,332,231	-				-0.1
2,332,448	-	b2229	b2229	0.14	+0.2
2,332,531	+	b2229	b2229	0.28	+0.4
2,332,531	+	b2229	b2229	0.28	+0.5
2,332,697	-	b2229	b2229	0.54	+5.9
2,332,834	+	b2229	b2229	0.76	+0.4
2,332,876	+	b2229	b2229	0.83	+2.0
2,332,892	+	b2229	b2229	0.86	-1.4
2,332,944	-				+1.0
2,333,058	-				+0.6
2,333,072	-				-0.3
2,333,072	-				+0.2
2,333,184	+	yfaA	b2230	0.12	-1.6
2,333,184	+	yfaA	b2230	0.12	-0.4
2,333,184	+	yfaA	b2230	0.12	+0.2
2,333,215	+	yfaA	b2230	0.14	+0.9
2,333,326	-	yfaA	b2230	0.21	-0.8