Strain Fitness in Serratia liquefaciens MT49 around IAI46_24790

Experiment: Nickel (II) chloride 80 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_24785 and IAI46_24790 are separated by 32 nucleotidesIAI46_24790 and IAI46_24795 are separated by 125 nucleotides IAI46_24785: IAI46_24785 - glycosyltransferase, at 5,290,537 to 5,291,634 _24785 IAI46_24790: IAI46_24790 - glycosyltransferase family 9 protein, at 5,291,667 to 5,292,680 _24790 IAI46_24795: IAI46_24795 - lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase, at 5,292,806 to 5,294,083 _24795 Position (kb) 5291 5292 5293Strain fitness (log2 ratio) -2 -1 0 1 2at 5290.916 kb on - strand, within IAI46_24785at 5290.916 kb on - strand, within IAI46_24785at 5291.025 kb on - strand, within IAI46_24785at 5291.137 kb on + strand, within IAI46_24785at 5291.214 kb on - strand, within IAI46_24785at 5291.587 kb on + strandat 5291.601 kb on + strandat 5291.636 kb on + strandat 5291.637 kb on - strandat 5291.659 kb on - strandat 5291.717 kb on + strandat 5291.717 kb on + strandat 5291.718 kb on - strandat 5291.749 kb on + strandat 5291.806 kb on + strand, within IAI46_24790at 5291.807 kb on + strand, within IAI46_24790at 5291.808 kb on - strand, within IAI46_24790at 5291.808 kb on - strand, within IAI46_24790at 5291.813 kb on + strand, within IAI46_24790at 5291.814 kb on - strand, within IAI46_24790at 5291.872 kb on - strand, within IAI46_24790at 5291.889 kb on + strand, within IAI46_24790at 5291.889 kb on + strand, within IAI46_24790at 5291.890 kb on - strand, within IAI46_24790at 5291.890 kb on - strand, within IAI46_24790at 5291.915 kb on - strand, within IAI46_24790at 5292.045 kb on + strand, within IAI46_24790at 5292.045 kb on + strand, within IAI46_24790at 5292.046 kb on - strand, within IAI46_24790at 5292.057 kb on - strand, within IAI46_24790at 5292.067 kb on + strand, within IAI46_24790at 5292.067 kb on + strand, within IAI46_24790at 5292.068 kb on - strand, within IAI46_24790at 5292.092 kb on + strand, within IAI46_24790at 5292.110 kb on + strand, within IAI46_24790at 5292.111 kb on - strand, within IAI46_24790at 5292.254 kb on + strand, within IAI46_24790at 5292.254 kb on + strand, within IAI46_24790at 5292.255 kb on - strand, within IAI46_24790at 5292.255 kb on - strand, within IAI46_24790at 5292.255 kb on - strand, within IAI46_24790at 5292.261 kb on + strand, within IAI46_24790at 5292.308 kb on + strand, within IAI46_24790at 5292.338 kb on + strand, within IAI46_24790at 5292.338 kb on + strand, within IAI46_24790at 5292.339 kb on - strand, within IAI46_24790at 5292.339 kb on - strand, within IAI46_24790at 5292.377 kb on - strand, within IAI46_24790at 5292.377 kb on - strand, within IAI46_24790at 5292.377 kb on - strand, within IAI46_24790at 5292.460 kb on + strand, within IAI46_24790at 5292.461 kb on - strand, within IAI46_24790at 5292.491 kb on + strand, within IAI46_24790at 5292.509 kb on - strand, within IAI46_24790at 5292.563 kb on + strand, within IAI46_24790at 5292.564 kb on - strand, within IAI46_24790at 5292.596 kb on - strandat 5292.630 kb on - strandat 5292.647 kb on + strandat 5292.648 kb on - strandat 5292.648 kb on - strandat 5292.689 kb on + strandat 5292.787 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
remove
5,290,916 - IAI46_24785 0.35 +0.7
5,290,916 - IAI46_24785 0.35 +0.3
5,291,025 - IAI46_24785 0.44 -0.8
5,291,137 + IAI46_24785 0.55 -0.8
5,291,214 - IAI46_24785 0.62 +0.2
5,291,587 + -0.1
5,291,601 + +0.3
5,291,636 + +0.7
5,291,637 - +0.4
5,291,659 - +0.2
5,291,717 + +0.2
5,291,717 + -0.1
5,291,718 - +0.4
5,291,749 + -0.7
5,291,806 + IAI46_24790 0.14 +0.6
5,291,807 + IAI46_24790 0.14 -0.5
5,291,808 - IAI46_24790 0.14 +0.2
5,291,808 - IAI46_24790 0.14 -0.3
5,291,813 + IAI46_24790 0.14 -0.6
5,291,814 - IAI46_24790 0.14 +0.8
5,291,872 - IAI46_24790 0.20 +0.3
5,291,889 + IAI46_24790 0.22 -0.3
5,291,889 + IAI46_24790 0.22 -0.6
5,291,890 - IAI46_24790 0.22 -0.0
5,291,890 - IAI46_24790 0.22 -0.4
5,291,915 - IAI46_24790 0.24 -0.7
5,292,045 + IAI46_24790 0.37 +1.0
5,292,045 + IAI46_24790 0.37 -0.1
5,292,046 - IAI46_24790 0.37 +0.4
5,292,057 - IAI46_24790 0.38 -0.2
5,292,067 + IAI46_24790 0.39 -0.1
5,292,067 + IAI46_24790 0.39 -0.3
5,292,068 - IAI46_24790 0.40 +0.3
5,292,092 + IAI46_24790 0.42 +0.6
5,292,110 + IAI46_24790 0.44 -0.4
5,292,111 - IAI46_24790 0.44 +0.6
5,292,254 + IAI46_24790 0.58 -0.0
5,292,254 + IAI46_24790 0.58 +0.1
5,292,255 - IAI46_24790 0.58 -1.1
5,292,255 - IAI46_24790 0.58 +0.5
5,292,255 - IAI46_24790 0.58 +0.7
5,292,261 + IAI46_24790 0.59 +0.1
5,292,308 + IAI46_24790 0.63 -0.4
5,292,338 + IAI46_24790 0.66 +0.7
5,292,338 + IAI46_24790 0.66 +0.2
5,292,339 - IAI46_24790 0.66 +1.0
5,292,339 - IAI46_24790 0.66 +1.0
5,292,377 - IAI46_24790 0.70 +0.0
5,292,377 - IAI46_24790 0.70 +0.8
5,292,377 - IAI46_24790 0.70 +0.1
5,292,460 + IAI46_24790 0.78 -2.0
5,292,461 - IAI46_24790 0.78 +0.1
5,292,491 + IAI46_24790 0.81 +2.1
5,292,509 - IAI46_24790 0.83 -0.2
5,292,563 + IAI46_24790 0.88 +0.3
5,292,564 - IAI46_24790 0.88 +0.1
5,292,596 - -0.3
5,292,630 - +0.1
5,292,647 + -0.8
5,292,648 - +0.3
5,292,648 - +0.5
5,292,689 + +0.7
5,292,787 + -0.1

Or see this region's nucleotide sequence