Strain Fitness in Serratia liquefaciens MT49 around IAI46_24760

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24755 and IAI46_24760 are separated by 4 nucleotidesIAI46_24760 and IAI46_24765 are separated by 1 nucleotides IAI46_24755: IAI46_24755 - O-antigen ligase family protein, at 5,283,833 to 5,285,071 _24755 IAI46_24760: IAI46_24760 - glycosyltransferase, at 5,285,076 to 5,286,059 _24760 IAI46_24765: IAI46_24765 - glycosyltransferase family 9 protein, at 5,286,061 to 5,287,158 _24765 Position (kb) 5285 5286 5287Strain fitness (log2 ratio) -2 -1 0 1 2at 5284.085 kb on - strand, within IAI46_24755at 5284.085 kb on - strand, within IAI46_24755at 5284.100 kb on + strand, within IAI46_24755at 5284.100 kb on + strand, within IAI46_24755at 5284.101 kb on - strand, within IAI46_24755at 5284.108 kb on + strand, within IAI46_24755at 5284.121 kb on + strand, within IAI46_24755at 5284.121 kb on + strand, within IAI46_24755at 5284.121 kb on + strand, within IAI46_24755at 5284.121 kb on + strand, within IAI46_24755at 5284.121 kb on + strand, within IAI46_24755at 5284.122 kb on - strand, within IAI46_24755at 5284.122 kb on - strand, within IAI46_24755at 5284.122 kb on - strand, within IAI46_24755at 5284.122 kb on - strand, within IAI46_24755at 5284.122 kb on - strand, within IAI46_24755at 5284.177 kb on - strand, within IAI46_24755at 5284.207 kb on + strand, within IAI46_24755at 5284.207 kb on + strand, within IAI46_24755at 5284.257 kb on - strand, within IAI46_24755at 5284.288 kb on - strand, within IAI46_24755at 5284.295 kb on - strand, within IAI46_24755at 5284.309 kb on + strand, within IAI46_24755at 5284.323 kb on - strand, within IAI46_24755at 5284.382 kb on + strand, within IAI46_24755at 5284.397 kb on + strand, within IAI46_24755at 5284.397 kb on + strand, within IAI46_24755at 5284.398 kb on - strand, within IAI46_24755at 5284.399 kb on + strand, within IAI46_24755at 5284.399 kb on + strand, within IAI46_24755at 5284.400 kb on - strand, within IAI46_24755at 5284.422 kb on + strand, within IAI46_24755at 5284.492 kb on - strand, within IAI46_24755at 5284.539 kb on + strand, within IAI46_24755at 5284.539 kb on + strand, within IAI46_24755at 5284.540 kb on - strand, within IAI46_24755at 5284.548 kb on + strand, within IAI46_24755at 5284.554 kb on + strand, within IAI46_24755at 5284.583 kb on - strand, within IAI46_24755at 5284.583 kb on - strand, within IAI46_24755at 5284.604 kb on - strand, within IAI46_24755at 5284.664 kb on - strand, within IAI46_24755at 5284.686 kb on + strand, within IAI46_24755at 5284.759 kb on + strand, within IAI46_24755at 5284.759 kb on + strand, within IAI46_24755at 5284.759 kb on + strand, within IAI46_24755at 5284.760 kb on - strand, within IAI46_24755at 5284.761 kb on + strand, within IAI46_24755at 5284.761 kb on + strand, within IAI46_24755at 5284.761 kb on + strand, within IAI46_24755at 5284.784 kb on + strand, within IAI46_24755at 5284.785 kb on - strand, within IAI46_24755at 5284.791 kb on + strand, within IAI46_24755at 5284.791 kb on + strand, within IAI46_24755at 5284.792 kb on - strand, within IAI46_24755at 5284.792 kb on - strand, within IAI46_24755at 5284.799 kb on + strand, within IAI46_24755at 5284.799 kb on + strand, within IAI46_24755at 5284.799 kb on + strand, within IAI46_24755at 5284.799 kb on + strand, within IAI46_24755at 5284.800 kb on - strand, within IAI46_24755at 5284.801 kb on + strand, within IAI46_24755at 5284.801 kb on + strand, within IAI46_24755at 5284.802 kb on - strand, within IAI46_24755at 5284.802 kb on - strand, within IAI46_24755at 5284.802 kb on - strand, within IAI46_24755at 5284.804 kb on - strand, within IAI46_24755at 5284.813 kb on + strand, within IAI46_24755at 5284.813 kb on + strand, within IAI46_24755at 5284.872 kb on + strand, within IAI46_24755at 5284.883 kb on + strand, within IAI46_24755at 5284.883 kb on + strand, within IAI46_24755at 5284.883 kb on + strand, within IAI46_24755at 5284.884 kb on - strand, within IAI46_24755at 5284.884 kb on - strand, within IAI46_24755at 5284.894 kb on - strand, within IAI46_24755at 5284.908 kb on + strand, within IAI46_24755at 5284.962 kb on - strandat 5284.980 kb on + strandat 5284.981 kb on - strandat 5284.987 kb on + strandat 5284.988 kb on - strandat 5284.999 kb on + strandat 5285.069 kb on + strandat 5285.070 kb on - strandat 5285.276 kb on + strand, within IAI46_24760at 5285.277 kb on - strand, within IAI46_24760at 5285.277 kb on - strand, within IAI46_24760at 5285.343 kb on + strand, within IAI46_24760at 5285.441 kb on + strand, within IAI46_24760at 5285.509 kb on - strand, within IAI46_24760at 5285.549 kb on - strand, within IAI46_24760at 5285.586 kb on + strand, within IAI46_24760at 5285.706 kb on + strand, within IAI46_24760at 5285.706 kb on + strand, within IAI46_24760at 5285.707 kb on - strand, within IAI46_24760at 5285.707 kb on - strand, within IAI46_24760at 5285.721 kb on - strand, within IAI46_24760at 5285.760 kb on - strand, within IAI46_24760at 5285.899 kb on - strand, within IAI46_24760at 5285.905 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.914 kb on - strand, within IAI46_24760at 5285.914 kb on - strand, within IAI46_24760at 5285.929 kb on + strand, within IAI46_24760at 5285.930 kb on - strand, within IAI46_24760at 5285.933 kb on + strand, within IAI46_24760at 5285.933 kb on + strand, within IAI46_24760at 5285.933 kb on + strand, within IAI46_24760at 5285.934 kb on - strand, within IAI46_24760at 5285.934 kb on - strand, within IAI46_24760at 5286.070 kb on - strandat 5286.101 kb on + strandat 5286.102 kb on - strandat 5286.105 kb on + strandat 5286.105 kb on + strandat 5286.106 kb on - strandat 5286.106 kb on - strandat 5286.153 kb on + strandat 5286.153 kb on + strandat 5286.153 kb on + strandat 5286.153 kb on + strandat 5286.153 kb on + strandat 5286.153 kb on + strandat 5286.154 kb on - strandat 5286.154 kb on - strandat 5286.154 kb on - strandat 5286.156 kb on + strandat 5286.156 kb on + strandat 5286.156 kb on + strandat 5286.156 kb on + strandat 5286.156 kb on + strandat 5286.156 kb on + strandat 5286.157 kb on - strandat 5286.157 kb on - strandat 5286.157 kb on - strandat 5286.157 kb on - strandat 5286.157 kb on - strandat 5286.157 kb on - strandat 5286.157 kb on - strandat 5286.157 kb on - strandat 5286.158 kb on + strandat 5286.158 kb on + strandat 5286.370 kb on + strand, within IAI46_24765at 5286.371 kb on - strand, within IAI46_24765at 5286.448 kb on + strand, within IAI46_24765at 5286.449 kb on - strand, within IAI46_24765at 5286.449 kb on - strand, within IAI46_24765at 5286.553 kb on + strand, within IAI46_24765at 5286.554 kb on - strand, within IAI46_24765at 5286.558 kb on + strand, within IAI46_24765at 5286.559 kb on - strand, within IAI46_24765at 5286.559 kb on - strand, within IAI46_24765at 5286.559 kb on - strand, within IAI46_24765at 5286.559 kb on - strand, within IAI46_24765at 5286.666 kb on + strand, within IAI46_24765at 5286.666 kb on + strand, within IAI46_24765at 5286.667 kb on - strand, within IAI46_24765at 5286.678 kb on - strand, within IAI46_24765at 5286.678 kb on - strand, within IAI46_24765at 5286.678 kb on - strand, within IAI46_24765at 5286.678 kb on - strand, within IAI46_24765at 5286.680 kb on + strand, within IAI46_24765at 5286.691 kb on - strand, within IAI46_24765at 5286.691 kb on - strand, within IAI46_24765at 5286.691 kb on - strand, within IAI46_24765at 5286.692 kb on + strand, within IAI46_24765at 5286.692 kb on + strand, within IAI46_24765at 5286.692 kb on + strand, within IAI46_24765at 5286.692 kb on + strand, within IAI46_24765at 5286.692 kb on + strand, within IAI46_24765at 5286.692 kb on + strand, within IAI46_24765at 5286.693 kb on - strand, within IAI46_24765at 5286.693 kb on - strand, within IAI46_24765at 5286.693 kb on - strand, within IAI46_24765at 5286.693 kb on - strand, within IAI46_24765at 5286.734 kb on + strand, within IAI46_24765at 5286.735 kb on - strand, within IAI46_24765at 5286.735 kb on - strand, within IAI46_24765at 5286.735 kb on - strand, within IAI46_24765at 5286.735 kb on - strand, within IAI46_24765at 5286.735 kb on - strand, within IAI46_24765at 5286.747 kb on + strand, within IAI46_24765at 5286.752 kb on + strand, within IAI46_24765at 5286.752 kb on + strand, within IAI46_24765at 5286.752 kb on + strand, within IAI46_24765at 5286.781 kb on - strand, within IAI46_24765at 5286.902 kb on + strand, within IAI46_24765at 5286.902 kb on + strand, within IAI46_24765at 5286.902 kb on + strand, within IAI46_24765at 5286.903 kb on - strand, within IAI46_24765at 5286.903 kb on - strand, within IAI46_24765at 5286.951 kb on + strand, within IAI46_24765at 5286.951 kb on + strand, within IAI46_24765at 5286.952 kb on - strand, within IAI46_24765at 5286.954 kb on + strand, within IAI46_24765at 5286.954 kb on + strand, within IAI46_24765at 5286.955 kb on - strand, within IAI46_24765at 5286.955 kb on - strand, within IAI46_24765at 5286.955 kb on - strand, within IAI46_24765at 5286.955 kb on - strand, within IAI46_24765at 5286.955 kb on - strand, within IAI46_24765at 5286.955 kb on - strand, within IAI46_24765at 5287.002 kb on + strand, within IAI46_24765at 5287.003 kb on - strand, within IAI46_24765at 5287.008 kb on + strand, within IAI46_24765at 5287.008 kb on + strand, within IAI46_24765at 5287.009 kb on - strand, within IAI46_24765at 5287.009 kb on - strand, within IAI46_24765at 5287.009 kb on - strand, within IAI46_24765at 5287.009 kb on - strand, within IAI46_24765at 5287.010 kb on - strand, within IAI46_24765at 5287.034 kb on + strand, within IAI46_24765at 5287.035 kb on - strand, within IAI46_24765at 5287.045 kb on - strand, within IAI46_24765

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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5,284,085 - IAI46_24755 0.20 +0.3
5,284,085 - IAI46_24755 0.20 -0.1
5,284,100 + IAI46_24755 0.22 +1.7
5,284,100 + IAI46_24755 0.22 -1.3
5,284,101 - IAI46_24755 0.22 +0.1
5,284,108 + IAI46_24755 0.22 +0.3
5,284,121 + IAI46_24755 0.23 +0.8
5,284,121 + IAI46_24755 0.23 -0.3
5,284,121 + IAI46_24755 0.23 +0.1
5,284,121 + IAI46_24755 0.23 -0.3
5,284,121 + IAI46_24755 0.23 +0.2
5,284,122 - IAI46_24755 0.23 +1.3
5,284,122 - IAI46_24755 0.23 -0.8
5,284,122 - IAI46_24755 0.23 -0.1
5,284,122 - IAI46_24755 0.23 -1.0
5,284,122 - IAI46_24755 0.23 +0.3
5,284,177 - IAI46_24755 0.28 -1.1
5,284,207 + IAI46_24755 0.30 +1.1
5,284,207 + IAI46_24755 0.30 +0.1
5,284,257 - IAI46_24755 0.34 +0.9
5,284,288 - IAI46_24755 0.37 -1.0
5,284,295 - IAI46_24755 0.37 +0.5
5,284,309 + IAI46_24755 0.38 -0.1
5,284,323 - IAI46_24755 0.40 -0.1
5,284,382 + IAI46_24755 0.44 +0.7
5,284,397 + IAI46_24755 0.46 -0.5
5,284,397 + IAI46_24755 0.46 -0.1
5,284,398 - IAI46_24755 0.46 +0.1
5,284,399 + IAI46_24755 0.46 +0.1
5,284,399 + IAI46_24755 0.46 +0.3
5,284,400 - IAI46_24755 0.46 +0.7
5,284,422 + IAI46_24755 0.48 -0.8
5,284,492 - IAI46_24755 0.53 -0.1
5,284,539 + IAI46_24755 0.57 +0.5
5,284,539 + IAI46_24755 0.57 -1.5
5,284,540 - IAI46_24755 0.57 +0.7
5,284,548 + IAI46_24755 0.58 +1.1
5,284,554 + IAI46_24755 0.58 +0.3
5,284,583 - IAI46_24755 0.61 +0.9
5,284,583 - IAI46_24755 0.61 -0.8
5,284,604 - IAI46_24755 0.62 +0.1
5,284,664 - IAI46_24755 0.67 -0.8
5,284,686 + IAI46_24755 0.69 +0.7
5,284,759 + IAI46_24755 0.75 -0.1
5,284,759 + IAI46_24755 0.75 -1.0
5,284,759 + IAI46_24755 0.75 -1.2
5,284,760 - IAI46_24755 0.75 -1.4
5,284,761 + IAI46_24755 0.75 -0.1
5,284,761 + IAI46_24755 0.75 +0.4
5,284,761 + IAI46_24755 0.75 -1.2
5,284,784 + IAI46_24755 0.77 -1.0
5,284,785 - IAI46_24755 0.77 -0.9
5,284,791 + IAI46_24755 0.77 -1.1
5,284,791 + IAI46_24755 0.77 +0.4
5,284,792 - IAI46_24755 0.77 -1.3
5,284,792 - IAI46_24755 0.77 -0.8
5,284,799 + IAI46_24755 0.78 -0.3
5,284,799 + IAI46_24755 0.78 +0.3
5,284,799 + IAI46_24755 0.78 -1.1
5,284,799 + IAI46_24755 0.78 +0.1
5,284,800 - IAI46_24755 0.78 -0.3
5,284,801 + IAI46_24755 0.78 -0.3
5,284,801 + IAI46_24755 0.78 -1.5
5,284,802 - IAI46_24755 0.78 -0.5
5,284,802 - IAI46_24755 0.78 +1.7
5,284,802 - IAI46_24755 0.78 +0.1
5,284,804 - IAI46_24755 0.78 -1.0
5,284,813 + IAI46_24755 0.79 +0.7
5,284,813 + IAI46_24755 0.79 -0.3
5,284,872 + IAI46_24755 0.84 -0.5
5,284,883 + IAI46_24755 0.85 -0.9
5,284,883 + IAI46_24755 0.85 -0.1
5,284,883 + IAI46_24755 0.85 -1.0
5,284,884 - IAI46_24755 0.85 -0.5
5,284,884 - IAI46_24755 0.85 -1.0
5,284,894 - IAI46_24755 0.86 -0.8
5,284,908 + IAI46_24755 0.87 -0.3
5,284,962 - -0.1
5,284,980 + -0.3
5,284,981 - +0.7
5,284,987 + -0.5
5,284,988 - +0.7
5,284,999 + +0.7
5,285,069 + +0.5
5,285,070 - +0.7
5,285,276 + IAI46_24760 0.20 -2.5
5,285,277 - IAI46_24760 0.20 +0.7
5,285,277 - IAI46_24760 0.20 +0.9
5,285,343 + IAI46_24760 0.27 -0.8
5,285,441 + IAI46_24760 0.37 +0.3
5,285,509 - IAI46_24760 0.44 +1.2
5,285,549 - IAI46_24760 0.48 +0.3
5,285,586 + IAI46_24760 0.52 -0.3
5,285,706 + IAI46_24760 0.64 -0.3
5,285,706 + IAI46_24760 0.64 -0.3
5,285,707 - IAI46_24760 0.64 -0.3
5,285,707 - IAI46_24760 0.64 +2.2
5,285,721 - IAI46_24760 0.66 -0.9
5,285,760 - IAI46_24760 0.70 +0.1
5,285,899 - IAI46_24760 0.84 -0.5
5,285,905 - IAI46_24760 0.84 +1.9
5,285,908 - IAI46_24760 0.85 +2.3
5,285,908 - IAI46_24760 0.85 +0.7
5,285,908 - IAI46_24760 0.85 -2.0
5,285,908 - IAI46_24760 0.85 +0.3
5,285,908 - IAI46_24760 0.85 +0.3
5,285,908 - IAI46_24760 0.85 +0.7
5,285,914 - IAI46_24760 0.85 +1.1
5,285,914 - IAI46_24760 0.85 +0.5
5,285,929 + IAI46_24760 0.87 +0.3
5,285,930 - IAI46_24760 0.87 -0.2
5,285,933 + IAI46_24760 0.87 +0.1
5,285,933 + IAI46_24760 0.87 -0.0
5,285,933 + IAI46_24760 0.87 -2.0
5,285,934 - IAI46_24760 0.87 -0.7
5,285,934 - IAI46_24760 0.87 -0.3
5,286,070 - +1.1
5,286,101 + -0.4
5,286,102 - -2.2
5,286,105 + +0.6
5,286,105 + -0.5
5,286,106 - -0.5
5,286,106 - -0.1
5,286,153 + -0.1
5,286,153 + -0.2
5,286,153 + -0.2
5,286,153 + -0.0
5,286,153 + +0.3
5,286,153 + -0.4
5,286,154 - +1.3
5,286,154 - +0.6
5,286,154 - +0.3
5,286,156 + -0.4
5,286,156 + -0.8
5,286,156 + +0.7
5,286,156 + +1.3
5,286,156 + -0.2
5,286,156 + -0.1
5,286,157 - -0.7
5,286,157 - -0.0
5,286,157 - -0.1
5,286,157 - -0.7
5,286,157 - +0.6
5,286,157 - -0.6
5,286,157 - +0.7
5,286,157 - +1.1
5,286,158 + +1.8
5,286,158 + -0.5
5,286,370 + IAI46_24765 0.28 -0.4
5,286,371 - IAI46_24765 0.28 -0.3
5,286,448 + IAI46_24765 0.35 +0.6
5,286,449 - IAI46_24765 0.35 -0.7
5,286,449 - IAI46_24765 0.35 -0.1
5,286,553 + IAI46_24765 0.45 +0.2
5,286,554 - IAI46_24765 0.45 +0.1
5,286,558 + IAI46_24765 0.45 -0.2
5,286,559 - IAI46_24765 0.45 +0.9
5,286,559 - IAI46_24765 0.45 -0.9
5,286,559 - IAI46_24765 0.45 -0.5
5,286,559 - IAI46_24765 0.45 -0.8
5,286,666 + IAI46_24765 0.55 -0.4
5,286,666 + IAI46_24765 0.55 +0.3
5,286,667 - IAI46_24765 0.55 +1.1
5,286,678 - IAI46_24765 0.56 +0.2
5,286,678 - IAI46_24765 0.56 -0.0
5,286,678 - IAI46_24765 0.56 +0.4
5,286,678 - IAI46_24765 0.56 +0.1
5,286,680 + IAI46_24765 0.56 -0.4
5,286,691 - IAI46_24765 0.57 +1.4
5,286,691 - IAI46_24765 0.57 +0.6
5,286,691 - IAI46_24765 0.57 +0.4
5,286,692 + IAI46_24765 0.57 -0.5
5,286,692 + IAI46_24765 0.57 +1.0
5,286,692 + IAI46_24765 0.57 +0.3
5,286,692 + IAI46_24765 0.57 +0.1
5,286,692 + IAI46_24765 0.57 -0.4
5,286,692 + IAI46_24765 0.57 -0.3
5,286,693 - IAI46_24765 0.58 +1.0
5,286,693 - IAI46_24765 0.58 -1.4
5,286,693 - IAI46_24765 0.58 +0.5
5,286,693 - IAI46_24765 0.58 +0.3
5,286,734 + IAI46_24765 0.61 +0.3
5,286,735 - IAI46_24765 0.61 -0.6
5,286,735 - IAI46_24765 0.61 -0.0
5,286,735 - IAI46_24765 0.61 -0.5
5,286,735 - IAI46_24765 0.61 +0.4
5,286,735 - IAI46_24765 0.61 +0.4
5,286,747 + IAI46_24765 0.62 -0.5
5,286,752 + IAI46_24765 0.63 -0.4
5,286,752 + IAI46_24765 0.63 +0.2
5,286,752 + IAI46_24765 0.63 +0.0
5,286,781 - IAI46_24765 0.66 -0.4
5,286,902 + IAI46_24765 0.77 +0.2
5,286,902 + IAI46_24765 0.77 +0.6
5,286,902 + IAI46_24765 0.77 +0.2
5,286,903 - IAI46_24765 0.77 -0.8
5,286,903 - IAI46_24765 0.77 -0.9
5,286,951 + IAI46_24765 0.81 +0.6
5,286,951 + IAI46_24765 0.81 +1.2
5,286,952 - IAI46_24765 0.81 -0.2
5,286,954 + IAI46_24765 0.81 -1.1
5,286,954 + IAI46_24765 0.81 -0.2
5,286,955 - IAI46_24765 0.81 +0.1
5,286,955 - IAI46_24765 0.81 +0.5
5,286,955 - IAI46_24765 0.81 -0.2
5,286,955 - IAI46_24765 0.81 -0.4
5,286,955 - IAI46_24765 0.81 -0.3
5,286,955 - IAI46_24765 0.81 -0.2
5,287,002 + IAI46_24765 0.86 +0.1
5,287,003 - IAI46_24765 0.86 +0.0
5,287,008 + IAI46_24765 0.86 +0.1
5,287,008 + IAI46_24765 0.86 +0.1
5,287,009 - IAI46_24765 0.86 -1.1
5,287,009 - IAI46_24765 0.86 +0.9
5,287,009 - IAI46_24765 0.86 -0.6
5,287,009 - IAI46_24765 0.86 +0.0
5,287,010 - IAI46_24765 0.86 +1.0
5,287,034 + IAI46_24765 0.89 +0.3
5,287,035 - IAI46_24765 0.89 +0.9
5,287,045 - IAI46_24765 0.90 +0.1

Or see this region's nucleotide sequence