Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_24450 and IAI46_24455 are separated by 401 nucleotides IAI46_24455 and IAI46_24460 are separated by 42 nucleotides IAI46_24460 and IAI46_24465 are separated by 14 nucleotides
IAI46_24450: IAI46_24450 - TonB-dependent vitamin B12 receptor BtuB, at 5,218,550 to 5,220,421
_24450
IAI46_24455: IAI46_24455 - tRNA (uridine(54)-C5)-methyltransferase TrmA, at 5,220,823 to 5,221,926
_24455
IAI46_24460: IAI46_24460 - YijD family membrane protein, at 5,221,969 to 5,222,337
_24460
IAI46_24465: IAI46_24465 - HTH-type transcriptional repressor FabR, at 5,222,352 to 5,222,984
_24465
Position (kb) 5220
5221
5222 Strain fitness (log2 ratio) -1
0
1
2 at 5219.823 kb on + strand, within IAI46_24450 at 5219.823 kb on + strand, within IAI46_24450 at 5219.823 kb on + strand, within IAI46_24450 at 5219.823 kb on + strand, within IAI46_24450 at 5219.824 kb on - strand, within IAI46_24450 at 5219.824 kb on - strand, within IAI46_24450 at 5219.829 kb on + strand, within IAI46_24450 at 5219.829 kb on + strand, within IAI46_24450 at 5219.829 kb on + strand, within IAI46_24450 at 5219.829 kb on + strand, within IAI46_24450 at 5219.829 kb on + strand, within IAI46_24450 at 5219.829 kb on + strand, within IAI46_24450 at 5219.829 kb on + strand, within IAI46_24450 at 5219.829 kb on + strand, within IAI46_24450 at 5219.829 kb on + strand, within IAI46_24450 at 5219.830 kb on - strand, within IAI46_24450 at 5219.830 kb on - strand, within IAI46_24450 at 5219.830 kb on - strand, within IAI46_24450 at 5219.830 kb on - strand, within IAI46_24450 at 5219.830 kb on - strand, within IAI46_24450 at 5219.830 kb on - strand, within IAI46_24450 at 5219.830 kb on - strand, within IAI46_24450 at 5219.830 kb on - strand, within IAI46_24450 at 5219.833 kb on + strand, within IAI46_24450 at 5219.890 kb on - strand, within IAI46_24450 at 5219.890 kb on - strand, within IAI46_24450 at 5219.929 kb on + strand, within IAI46_24450 at 5219.953 kb on + strand, within IAI46_24450 at 5219.953 kb on + strand, within IAI46_24450 at 5219.953 kb on + strand, within IAI46_24450 at 5219.953 kb on + strand, within IAI46_24450 at 5219.953 kb on + strand, within IAI46_24450 at 5219.954 kb on - strand, within IAI46_24450 at 5219.954 kb on - strand, within IAI46_24450 at 5219.954 kb on - strand, within IAI46_24450 at 5219.956 kb on + strand, within IAI46_24450 at 5219.957 kb on - strand, within IAI46_24450 at 5219.957 kb on - strand, within IAI46_24450 at 5219.957 kb on - strand, within IAI46_24450 at 5219.991 kb on + strand, within IAI46_24450 at 5220.016 kb on + strand, within IAI46_24450 at 5220.017 kb on - strand, within IAI46_24450 at 5220.017 kb on - strand, within IAI46_24450 at 5220.017 kb on - strand, within IAI46_24450 at 5220.188 kb on + strand, within IAI46_24450 at 5220.334 kb on + strand at 5220.335 kb on - strand at 5220.335 kb on - strand at 5220.439 kb on + strand at 5220.501 kb on - strand at 5220.501 kb on - strand at 5220.544 kb on + strand at 5220.544 kb on + strand at 5220.544 kb on + strand at 5220.544 kb on + strand at 5220.544 kb on + strand at 5220.545 kb on - strand at 5220.545 kb on - strand at 5220.545 kb on - strand at 5220.545 kb on - strand at 5220.545 kb on - strand at 5220.545 kb on - strand at 5220.548 kb on + strand at 5220.549 kb on - strand at 5220.549 kb on - strand at 5220.549 kb on - strand at 5220.597 kb on + strand at 5220.606 kb on - strand at 5220.698 kb on - strand at 5220.698 kb on - strand at 5220.698 kb on - strand at 5220.698 kb on - strand at 5220.698 kb on - strand at 5220.709 kb on - strand at 5220.709 kb on - strand at 5220.709 kb on - strand at 5220.712 kb on + strand at 5220.713 kb on - strand at 5220.713 kb on - strand at 5220.713 kb on - strand at 5220.713 kb on - strand at 5220.720 kb on + strand at 5220.720 kb on + strand at 5220.721 kb on - strand at 5220.729 kb on - strand at 5220.738 kb on - strand at 5220.743 kb on + strand at 5220.743 kb on + strand at 5220.743 kb on + strand at 5220.747 kb on - strand at 5220.783 kb on + strand at 5220.784 kb on - strand at 5220.784 kb on - strand at 5220.844 kb on - strand at 5220.853 kb on + strand at 5220.854 kb on - strand at 5220.854 kb on - strand at 5220.952 kb on + strand, within IAI46_24455 at 5220.952 kb on + strand, within IAI46_24455 at 5221.000 kb on + strand, within IAI46_24455 at 5221.000 kb on + strand, within IAI46_24455 at 5221.000 kb on + strand, within IAI46_24455 at 5221.000 kb on + strand, within IAI46_24455 at 5221.001 kb on - strand, within IAI46_24455 at 5221.001 kb on - strand, within IAI46_24455 at 5221.001 kb on - strand, within IAI46_24455 at 5221.001 kb on - strand, within IAI46_24455 at 5221.001 kb on - strand, within IAI46_24455 at 5221.120 kb on - strand, within IAI46_24455 at 5221.150 kb on + strand, within IAI46_24455 at 5221.150 kb on + strand, within IAI46_24455 at 5221.151 kb on - strand, within IAI46_24455 at 5221.192 kb on + strand, within IAI46_24455 at 5221.193 kb on - strand, within IAI46_24455 at 5221.201 kb on - strand, within IAI46_24455 at 5221.322 kb on - strand, within IAI46_24455 at 5221.322 kb on - strand, within IAI46_24455 at 5221.412 kb on + strand, within IAI46_24455 at 5221.412 kb on + strand, within IAI46_24455 at 5221.412 kb on + strand, within IAI46_24455 at 5221.412 kb on + strand, within IAI46_24455 at 5221.412 kb on + strand, within IAI46_24455 at 5221.412 kb on + strand, within IAI46_24455 at 5221.412 kb on + strand, within IAI46_24455 at 5221.412 kb on + strand, within IAI46_24455 at 5221.412 kb on + strand, within IAI46_24455 at 5221.413 kb on - strand, within IAI46_24455 at 5221.413 kb on - strand, within IAI46_24455 at 5221.413 kb on - strand, within IAI46_24455 at 5221.474 kb on + strand, within IAI46_24455 at 5221.475 kb on - strand, within IAI46_24455 at 5221.475 kb on - strand, within IAI46_24455 at 5221.513 kb on - strand, within IAI46_24455 at 5221.570 kb on + strand, within IAI46_24455 at 5221.570 kb on + strand, within IAI46_24455 at 5221.571 kb on - strand, within IAI46_24455 at 5221.571 kb on - strand, within IAI46_24455 at 5221.602 kb on - strand, within IAI46_24455 at 5221.602 kb on - strand, within IAI46_24455 at 5221.602 kb on - strand, within IAI46_24455 at 5221.608 kb on + strand, within IAI46_24455 at 5221.678 kb on - strand, within IAI46_24455 at 5221.693 kb on + strand, within IAI46_24455 at 5221.694 kb on - strand, within IAI46_24455 at 5221.694 kb on - strand, within IAI46_24455 at 5221.694 kb on - strand, within IAI46_24455 at 5221.694 kb on - strand, within IAI46_24455 at 5221.694 kb on - strand, within IAI46_24455 at 5221.695 kb on + strand, within IAI46_24455 at 5221.695 kb on + strand, within IAI46_24455 at 5221.696 kb on - strand, within IAI46_24455 at 5221.696 kb on - strand, within IAI46_24455 at 5221.696 kb on - strand, within IAI46_24455 at 5221.752 kb on - strand, within IAI46_24455 at 5221.768 kb on + strand, within IAI46_24455 at 5221.783 kb on + strand, within IAI46_24455 at 5221.784 kb on - strand, within IAI46_24455 at 5221.785 kb on + strand, within IAI46_24455 at 5221.785 kb on + strand, within IAI46_24455 at 5221.785 kb on + strand, within IAI46_24455 at 5221.785 kb on + strand, within IAI46_24455 at 5221.786 kb on - strand, within IAI46_24455 at 5221.786 kb on - strand, within IAI46_24455 at 5221.879 kb on + strand at 5221.880 kb on - strand at 5221.904 kb on + strand at 5221.904 kb on + strand at 5221.904 kb on + strand at 5221.980 kb on + strand at 5221.980 kb on + strand at 5221.981 kb on - strand at 5221.981 kb on - strand at 5222.046 kb on + strand, within IAI46_24460 at 5222.047 kb on - strand, within IAI46_24460 at 5222.064 kb on + strand, within IAI46_24460 at 5222.065 kb on - strand, within IAI46_24460 at 5222.065 kb on - strand, within IAI46_24460 at 5222.065 kb on - strand, within IAI46_24460 at 5222.105 kb on + strand, within IAI46_24460 at 5222.106 kb on - strand, within IAI46_24460 at 5222.106 kb on - strand, within IAI46_24460 at 5222.106 kb on - strand, within IAI46_24460 at 5222.106 kb on - strand, within IAI46_24460 at 5222.145 kb on + strand, within IAI46_24460 at 5222.145 kb on + strand, within IAI46_24460 at 5222.146 kb on - strand, within IAI46_24460 at 5222.146 kb on - strand, within IAI46_24460 at 5222.146 kb on - strand, within IAI46_24460 at 5222.149 kb on + strand, within IAI46_24460 at 5222.149 kb on + strand, within IAI46_24460 at 5222.149 kb on + strand, within IAI46_24460 at 5222.149 kb on + strand, within IAI46_24460 at 5222.150 kb on - strand, within IAI46_24460 at 5222.150 kb on - strand, within IAI46_24460 at 5222.178 kb on - strand, within IAI46_24460 at 5222.178 kb on - strand, within IAI46_24460 at 5222.195 kb on + strand, within IAI46_24460 at 5222.195 kb on + strand, within IAI46_24460 at 5222.195 kb on + strand, within IAI46_24460 at 5222.195 kb on + strand, within IAI46_24460 at 5222.196 kb on - strand, within IAI46_24460 at 5222.196 kb on - strand, within IAI46_24460 at 5222.196 kb on - strand, within IAI46_24460 at 5222.305 kb on + strand at 5222.306 kb on - strand at 5222.306 kb on - strand at 5222.306 kb on - strand at 5222.306 kb on - strand at 5222.306 kb on - strand at 5222.346 kb on - strand at 5222.356 kb on - strand at 5222.356 kb on - strand at 5222.364 kb on + strand at 5222.365 kb on - strand at 5222.398 kb on + strand at 5222.402 kb on - strand at 5222.516 kb on + strand, within IAI46_24465 at 5222.516 kb on + strand, within IAI46_24465 at 5222.516 kb on + strand, within IAI46_24465 at 5222.516 kb on + strand, within IAI46_24465 at 5222.517 kb on - strand, within IAI46_24465 at 5222.517 kb on - strand, within IAI46_24465 at 5222.517 kb on - strand, within IAI46_24465 at 5222.553 kb on - strand, within IAI46_24465 at 5222.572 kb on + strand, within IAI46_24465
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 5,219,823 + IAI46_24450 0.68 +0.1 5,219,823 + IAI46_24450 0.68 -0.3 5,219,823 + IAI46_24450 0.68 -0.9 5,219,823 + IAI46_24450 0.68 +0.4 5,219,824 - IAI46_24450 0.68 +0.5 5,219,824 - IAI46_24450 0.68 +0.1 5,219,829 + IAI46_24450 0.68 -0.3 5,219,829 + IAI46_24450 0.68 +0.7 5,219,829 + IAI46_24450 0.68 -0.9 5,219,829 + IAI46_24450 0.68 +0.9 5,219,829 + IAI46_24450 0.68 +0.7 5,219,829 + IAI46_24450 0.68 -0.3 5,219,829 + IAI46_24450 0.68 +0.3 5,219,829 + IAI46_24450 0.68 -0.5 5,219,829 + IAI46_24450 0.68 -0.5 5,219,830 - IAI46_24450 0.68 -0.5 5,219,830 - IAI46_24450 0.68 +0.1 5,219,830 - IAI46_24450 0.68 +1.1 5,219,830 - IAI46_24450 0.68 +0.4 5,219,830 - IAI46_24450 0.68 -0.2 5,219,830 - IAI46_24450 0.68 +0.1 5,219,830 - IAI46_24450 0.68 -0.4 5,219,830 - IAI46_24450 0.68 -0.3 5,219,833 + IAI46_24450 0.69 -1.1 5,219,890 - IAI46_24450 0.72 +0.1 5,219,890 - IAI46_24450 0.72 +0.1 5,219,929 + IAI46_24450 0.74 +0.1 5,219,953 + IAI46_24450 0.75 -1.5 5,219,953 + IAI46_24450 0.75 +0.4 5,219,953 + IAI46_24450 0.75 -0.3 5,219,953 + IAI46_24450 0.75 -0.0 5,219,953 + IAI46_24450 0.75 -1.5 5,219,954 - IAI46_24450 0.75 -1.7 5,219,954 - IAI46_24450 0.75 -0.3 5,219,954 - IAI46_24450 0.75 -0.0 5,219,956 + IAI46_24450 0.75 +0.6 5,219,957 - IAI46_24450 0.75 +0.3 5,219,957 - IAI46_24450 0.75 +0.5 5,219,957 - IAI46_24450 0.75 +0.1 5,219,991 + IAI46_24450 0.77 -0.7 5,220,016 + IAI46_24450 0.78 -0.1 5,220,017 - IAI46_24450 0.78 +0.3 5,220,017 - IAI46_24450 0.78 +0.7 5,220,017 - IAI46_24450 0.78 +0.2 5,220,188 + IAI46_24450 0.88 +0.7 5,220,334 + +0.7 5,220,335 - -0.2 5,220,335 - +0.2 5,220,439 + -0.2 5,220,501 - +0.3 5,220,501 - -0.0 5,220,544 + +0.6 5,220,544 + -0.1 5,220,544 + +0.1 5,220,544 + +0.5 5,220,544 + -0.2 5,220,545 - -0.6 5,220,545 - -0.4 5,220,545 - -0.1 5,220,545 - +0.4 5,220,545 - -0.4 5,220,545 - +0.8 5,220,548 + +0.9 5,220,549 - -0.2 5,220,549 - +0.1 5,220,549 - +0.2 5,220,597 + -0.2 5,220,606 - -0.3 5,220,698 - +0.2 5,220,698 - -0.9 5,220,698 - +0.7 5,220,698 - +0.5 5,220,698 - -0.3 5,220,709 - +0.2 5,220,709 - -0.3 5,220,709 - +0.7 5,220,712 + +0.0 5,220,713 - +0.9 5,220,713 - +0.6 5,220,713 - -0.1 5,220,713 - -0.3 5,220,720 + +0.5 5,220,720 + -0.6 5,220,721 - +0.4 5,220,729 - -0.1 5,220,738 - -0.5 5,220,743 + -0.7 5,220,743 + +1.5 5,220,743 + -0.7 5,220,747 - +0.7 5,220,783 + -0.1 5,220,784 - +2.0 5,220,784 - -0.1 5,220,844 - -0.3 5,220,853 + -0.3 5,220,854 - -0.1 5,220,854 - +0.7 5,220,952 + IAI46_24455 0.12 +1.1 5,220,952 + IAI46_24455 0.12 -0.1 5,221,000 + IAI46_24455 0.16 -0.3 5,221,000 + IAI46_24455 0.16 -0.5 5,221,000 + IAI46_24455 0.16 +0.7 5,221,000 + IAI46_24455 0.16 +1.6 5,221,001 - IAI46_24455 0.16 -0.1 5,221,001 - IAI46_24455 0.16 -0.0 5,221,001 - IAI46_24455 0.16 -0.2 5,221,001 - IAI46_24455 0.16 +0.2 5,221,001 - IAI46_24455 0.16 +0.4 5,221,120 - IAI46_24455 0.27 +0.1 5,221,150 + IAI46_24455 0.30 +0.0 5,221,150 + IAI46_24455 0.30 +0.7 5,221,151 - IAI46_24455 0.30 -0.4 5,221,192 + IAI46_24455 0.33 -0.2 5,221,193 - IAI46_24455 0.34 +0.2 5,221,201 - IAI46_24455 0.34 -0.7 5,221,322 - IAI46_24455 0.45 +0.6 5,221,322 - IAI46_24455 0.45 +0.4 5,221,412 + IAI46_24455 0.53 +0.7 5,221,412 + IAI46_24455 0.53 -1.4 5,221,412 + IAI46_24455 0.53 +0.7 5,221,412 + IAI46_24455 0.53 -0.6 5,221,412 + IAI46_24455 0.53 -0.6 5,221,412 + IAI46_24455 0.53 -1.0 5,221,412 + IAI46_24455 0.53 +0.7 5,221,412 + IAI46_24455 0.53 +0.3 5,221,412 + IAI46_24455 0.53 +0.1 5,221,413 - IAI46_24455 0.53 -0.3 5,221,413 - IAI46_24455 0.53 +0.3 5,221,413 - IAI46_24455 0.53 -0.4 5,221,474 + IAI46_24455 0.59 -0.4 5,221,475 - IAI46_24455 0.59 +1.8 5,221,475 - IAI46_24455 0.59 -0.4 5,221,513 - IAI46_24455 0.62 +0.7 5,221,570 + IAI46_24455 0.68 +0.7 5,221,570 + IAI46_24455 0.68 +1.7 5,221,571 - IAI46_24455 0.68 +0.1 5,221,571 - IAI46_24455 0.68 +0.8 5,221,602 - IAI46_24455 0.71 -0.1 5,221,602 - IAI46_24455 0.71 +0.6 5,221,602 - IAI46_24455 0.71 +0.3 5,221,608 + IAI46_24455 0.71 -0.5 5,221,678 - IAI46_24455 0.77 +0.7 5,221,693 + IAI46_24455 0.79 -0.5 5,221,694 - IAI46_24455 0.79 +1.3 5,221,694 - IAI46_24455 0.79 +1.5 5,221,694 - IAI46_24455 0.79 +1.3 5,221,694 - IAI46_24455 0.79 -0.2 5,221,694 - IAI46_24455 0.79 -0.3 5,221,695 + IAI46_24455 0.79 +0.5 5,221,695 + IAI46_24455 0.79 +0.7 5,221,696 - IAI46_24455 0.79 +0.2 5,221,696 - IAI46_24455 0.79 +2.1 5,221,696 - IAI46_24455 0.79 +0.2 5,221,752 - IAI46_24455 0.84 -0.3 5,221,768 + IAI46_24455 0.86 -1.6 5,221,783 + IAI46_24455 0.87 -0.9 5,221,784 - IAI46_24455 0.87 -0.6 5,221,785 + IAI46_24455 0.87 -0.4 5,221,785 + IAI46_24455 0.87 +0.2 5,221,785 + IAI46_24455 0.87 -0.4 5,221,785 + IAI46_24455 0.87 -0.4 5,221,786 - IAI46_24455 0.87 -0.3 5,221,786 - IAI46_24455 0.87 +0.7 5,221,879 + +0.8 5,221,880 - -0.6 5,221,904 + -0.1 5,221,904 + +0.5 5,221,904 + +0.0 5,221,980 + -0.1 5,221,980 + +1.9 5,221,981 - +0.1 5,221,981 - +0.3 5,222,046 + IAI46_24460 0.21 +0.4 5,222,047 - IAI46_24460 0.21 +0.8 5,222,064 + IAI46_24460 0.26 +0.2 5,222,065 - IAI46_24460 0.26 +0.2 5,222,065 - IAI46_24460 0.26 +0.4 5,222,065 - IAI46_24460 0.26 +1.2 5,222,105 + IAI46_24460 0.37 +0.5 5,222,106 - IAI46_24460 0.37 +0.1 5,222,106 - IAI46_24460 0.37 +0.1 5,222,106 - IAI46_24460 0.37 +0.4 5,222,106 - IAI46_24460 0.37 -0.4 5,222,145 + IAI46_24460 0.48 -0.4 5,222,145 + IAI46_24460 0.48 -0.2 5,222,146 - IAI46_24460 0.48 -0.2 5,222,146 - IAI46_24460 0.48 -0.7 5,222,146 - IAI46_24460 0.48 +0.0 5,222,149 + IAI46_24460 0.49 +0.7 5,222,149 + IAI46_24460 0.49 +0.5 5,222,149 + IAI46_24460 0.49 -0.1 5,222,149 + IAI46_24460 0.49 +0.0 5,222,150 - IAI46_24460 0.49 +0.3 5,222,150 - IAI46_24460 0.49 -0.4 5,222,178 - IAI46_24460 0.57 +0.5 5,222,178 - IAI46_24460 0.57 -0.3 5,222,195 + IAI46_24460 0.61 -1.4 5,222,195 + IAI46_24460 0.61 -0.1 5,222,195 + IAI46_24460 0.61 -0.2 5,222,195 + IAI46_24460 0.61 -1.4 5,222,196 - IAI46_24460 0.62 -0.2 5,222,196 - IAI46_24460 0.62 +0.1 5,222,196 - IAI46_24460 0.62 +0.1 5,222,305 + -1.1 5,222,306 - +1.3 5,222,306 - -0.4 5,222,306 - -0.9 5,222,306 - +0.8 5,222,306 - +0.7 5,222,346 - +0.1 5,222,356 - -0.1 5,222,356 - +0.1 5,222,364 + +1.0 5,222,365 - -0.4 5,222,398 + +0.5 5,222,402 - +1.1 5,222,516 + IAI46_24465 0.26 +2.3 5,222,516 + IAI46_24465 0.26 +1.3 5,222,516 + IAI46_24465 0.26 +1.3 5,222,516 + IAI46_24465 0.26 +0.9 5,222,517 - IAI46_24465 0.26 +1.6 5,222,517 - IAI46_24465 0.26 +1.3 5,222,517 - IAI46_24465 0.26 +0.8 5,222,553 - IAI46_24465 0.32 +1.6 5,222,572 + IAI46_24465 0.35 +2.0
Or see this region's nucleotide sequence