Strain Fitness in Serratia liquefaciens MT49 around IAI46_22315

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22305 and IAI46_22310 are separated by 51 nucleotidesIAI46_22310 and IAI46_22315 are separated by 9 nucleotidesIAI46_22315 and IAI46_22320 are separated by 116 nucleotides IAI46_22305: IAI46_22305 - YraN family protein, at 4,751,051 to 4,751,404 _22305 IAI46_22310: IAI46_22310 - DnaA initiator-associating protein DiaA, at 4,751,456 to 4,752,046 _22310 IAI46_22315: IAI46_22315 - divisome-associated lipoprotein YraP, at 4,752,056 to 4,752,631 _22315 IAI46_22320: IAI46_22320 - peptidase S10, at 4,752,748 to 4,754,310 _22320 Position (kb) 4752 4753Strain fitness (log2 ratio) -2 -1 0 1 2at 4751.078 kb on + strandat 4751.079 kb on - strandat 4751.081 kb on + strandat 4751.085 kb on + strandat 4751.099 kb on + strand, within IAI46_22305at 4751.099 kb on + strand, within IAI46_22305at 4751.100 kb on - strand, within IAI46_22305at 4751.140 kb on + strand, within IAI46_22305at 4751.140 kb on + strand, within IAI46_22305at 4751.141 kb on - strand, within IAI46_22305at 4751.205 kb on + strand, within IAI46_22305at 4751.205 kb on + strand, within IAI46_22305at 4751.205 kb on + strand, within IAI46_22305at 4751.206 kb on - strand, within IAI46_22305at 4751.251 kb on + strand, within IAI46_22305at 4751.252 kb on - strand, within IAI46_22305at 4751.252 kb on - strand, within IAI46_22305at 4751.402 kb on + strandat 4751.413 kb on + strandat 4751.413 kb on + strandat 4751.413 kb on + strandat 4751.413 kb on + strandat 4751.440 kb on - strandat 4751.447 kb on + strandat 4751.447 kb on + strandat 4751.450 kb on + strandat 4751.451 kb on - strandat 4751.465 kb on - strandat 4751.470 kb on + strandat 4751.471 kb on - strandat 4751.471 kb on - strandat 4751.581 kb on + strand, within IAI46_22310at 4751.581 kb on + strand, within IAI46_22310at 4751.790 kb on + strand, within IAI46_22310at 4751.790 kb on + strand, within IAI46_22310at 4751.790 kb on + strand, within IAI46_22310at 4751.791 kb on - strand, within IAI46_22310at 4751.882 kb on - strand, within IAI46_22310at 4751.981 kb on - strand, within IAI46_22310at 4751.981 kb on - strand, within IAI46_22310at 4751.992 kb on + strandat 4751.993 kb on - strandat 4752.013 kb on - strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.019 kb on + strandat 4752.020 kb on - strandat 4752.063 kb on + strandat 4752.064 kb on - strandat 4752.103 kb on - strandat 4752.112 kb on + strandat 4752.112 kb on + strandat 4752.113 kb on - strandat 4752.152 kb on - strand, within IAI46_22315at 4752.189 kb on + strand, within IAI46_22315at 4752.377 kb on + strand, within IAI46_22315at 4752.462 kb on + strand, within IAI46_22315at 4752.462 kb on + strand, within IAI46_22315at 4752.463 kb on - strand, within IAI46_22315at 4752.476 kb on - strand, within IAI46_22315at 4752.625 kb on + strandat 4752.626 kb on - strandat 4752.712 kb on - strandat 4752.732 kb on + strandat 4752.738 kb on + strandat 4752.789 kb on - strandat 4752.879 kb on + strandat 4752.909 kb on - strand, within IAI46_22320at 4752.920 kb on - strand, within IAI46_22320at 4752.988 kb on + strand, within IAI46_22320at 4752.988 kb on + strand, within IAI46_22320at 4752.988 kb on + strand, within IAI46_22320at 4752.989 kb on - strand, within IAI46_22320at 4752.989 kb on - strand, within IAI46_22320at 4752.989 kb on - strand, within IAI46_22320at 4753.017 kb on + strand, within IAI46_22320at 4753.017 kb on + strand, within IAI46_22320at 4753.048 kb on + strand, within IAI46_22320at 4753.048 kb on + strand, within IAI46_22320at 4753.086 kb on + strand, within IAI46_22320at 4753.086 kb on + strand, within IAI46_22320at 4753.151 kb on - strand, within IAI46_22320at 4753.158 kb on - strand, within IAI46_22320at 4753.158 kb on - strand, within IAI46_22320at 4753.158 kb on - strand, within IAI46_22320at 4753.171 kb on + strand, within IAI46_22320at 4753.171 kb on + strand, within IAI46_22320at 4753.171 kb on + strand, within IAI46_22320at 4753.171 kb on + strand, within IAI46_22320at 4753.172 kb on - strand, within IAI46_22320at 4753.172 kb on - strand, within IAI46_22320at 4753.199 kb on + strand, within IAI46_22320at 4753.203 kb on + strand, within IAI46_22320at 4753.226 kb on - strand, within IAI46_22320at 4753.301 kb on - strand, within IAI46_22320at 4753.338 kb on + strand, within IAI46_22320at 4753.353 kb on - strand, within IAI46_22320at 4753.361 kb on - strand, within IAI46_22320at 4753.402 kb on + strand, within IAI46_22320at 4753.403 kb on - strand, within IAI46_22320at 4753.461 kb on + strand, within IAI46_22320at 4753.462 kb on - strand, within IAI46_22320at 4753.496 kb on - strand, within IAI46_22320at 4753.546 kb on + strand, within IAI46_22320at 4753.547 kb on - strand, within IAI46_22320at 4753.547 kb on - strand, within IAI46_22320at 4753.547 kb on - strand, within IAI46_22320at 4753.547 kb on - strand, within IAI46_22320at 4753.547 kb on - strand, within IAI46_22320at 4753.547 kb on - strand, within IAI46_22320at 4753.549 kb on + strand, within IAI46_22320at 4753.550 kb on - strand, within IAI46_22320at 4753.550 kb on - strand, within IAI46_22320at 4753.567 kb on + strand, within IAI46_22320at 4753.568 kb on - strand, within IAI46_22320at 4753.585 kb on + strand, within IAI46_22320

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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4,751,078 + +0.4
4,751,079 - +1.1
4,751,081 + -0.5
4,751,085 + +0.4
4,751,099 + IAI46_22305 0.14 -0.3
4,751,099 + IAI46_22305 0.14 -0.5
4,751,100 - IAI46_22305 0.14 +0.2
4,751,140 + IAI46_22305 0.25 -0.7
4,751,140 + IAI46_22305 0.25 +0.9
4,751,141 - IAI46_22305 0.25 -0.2
4,751,205 + IAI46_22305 0.44 -0.0
4,751,205 + IAI46_22305 0.44 -0.2
4,751,205 + IAI46_22305 0.44 -0.9
4,751,206 - IAI46_22305 0.44 -0.0
4,751,251 + IAI46_22305 0.56 -0.5
4,751,252 - IAI46_22305 0.57 -0.4
4,751,252 - IAI46_22305 0.57 +0.2
4,751,402 + +0.6
4,751,413 + +0.9
4,751,413 + -0.4
4,751,413 + -0.6
4,751,413 + +0.1
4,751,440 - +1.5
4,751,447 + +0.5
4,751,447 + +0.3
4,751,450 + +0.7
4,751,451 - +0.0
4,751,465 - +1.1
4,751,470 + +0.2
4,751,471 - +0.3
4,751,471 - +0.9
4,751,581 + IAI46_22310 0.21 +1.5
4,751,581 + IAI46_22310 0.21 +0.2
4,751,790 + IAI46_22310 0.57 +0.6
4,751,790 + IAI46_22310 0.57 +0.7
4,751,790 + IAI46_22310 0.57 +1.3
4,751,791 - IAI46_22310 0.57 +0.0
4,751,882 - IAI46_22310 0.72 +0.2
4,751,981 - IAI46_22310 0.89 +2.3
4,751,981 - IAI46_22310 0.89 -0.0
4,751,992 + +0.1
4,751,993 - +1.0
4,752,013 - +0.9
4,752,019 + +0.3
4,752,019 + +0.1
4,752,019 + +0.5
4,752,019 + +0.7
4,752,019 + +0.1
4,752,019 + +0.2
4,752,019 + -0.1
4,752,019 + +0.5
4,752,019 + +0.8
4,752,019 + +0.8
4,752,019 + +0.4
4,752,020 - +0.3
4,752,063 + +0.4
4,752,064 - +1.3
4,752,103 - -0.2
4,752,112 + -1.6
4,752,112 + +0.3
4,752,113 - +1.1
4,752,152 - IAI46_22315 0.17 +0.4
4,752,189 + IAI46_22315 0.23 -0.6
4,752,377 + IAI46_22315 0.56 -0.4
4,752,462 + IAI46_22315 0.70 +0.6
4,752,462 + IAI46_22315 0.70 +0.6
4,752,463 - IAI46_22315 0.71 -0.5
4,752,476 - IAI46_22315 0.73 -0.4
4,752,625 + -0.3
4,752,626 - +0.1
4,752,712 - +0.6
4,752,732 + +0.0
4,752,738 + +0.0
4,752,789 - +0.3
4,752,879 + +0.1
4,752,909 - IAI46_22320 0.10 +0.7
4,752,920 - IAI46_22320 0.11 -0.2
4,752,988 + IAI46_22320 0.15 -0.1
4,752,988 + IAI46_22320 0.15 +0.2
4,752,988 + IAI46_22320 0.15 +0.9
4,752,989 - IAI46_22320 0.15 +0.7
4,752,989 - IAI46_22320 0.15 -0.5
4,752,989 - IAI46_22320 0.15 -0.6
4,753,017 + IAI46_22320 0.17 -0.0
4,753,017 + IAI46_22320 0.17 -0.9
4,753,048 + IAI46_22320 0.19 -0.3
4,753,048 + IAI46_22320 0.19 +0.3
4,753,086 + IAI46_22320 0.22 +0.1
4,753,086 + IAI46_22320 0.22 -0.5
4,753,151 - IAI46_22320 0.26 +1.0
4,753,158 - IAI46_22320 0.26 +1.6
4,753,158 - IAI46_22320 0.26 +1.4
4,753,158 - IAI46_22320 0.26 +0.6
4,753,171 + IAI46_22320 0.27 -1.4
4,753,171 + IAI46_22320 0.27 +0.9
4,753,171 + IAI46_22320 0.27 +0.0
4,753,171 + IAI46_22320 0.27 -0.1
4,753,172 - IAI46_22320 0.27 +0.6
4,753,172 - IAI46_22320 0.27 +0.4
4,753,199 + IAI46_22320 0.29 -0.4
4,753,203 + IAI46_22320 0.29 +0.2
4,753,226 - IAI46_22320 0.31 +0.6
4,753,301 - IAI46_22320 0.35 +0.4
4,753,338 + IAI46_22320 0.38 +0.2
4,753,353 - IAI46_22320 0.39 -0.0
4,753,361 - IAI46_22320 0.39 -2.0
4,753,402 + IAI46_22320 0.42 -2.6
4,753,403 - IAI46_22320 0.42 +0.1
4,753,461 + IAI46_22320 0.46 -0.5
4,753,462 - IAI46_22320 0.46 -0.1
4,753,496 - IAI46_22320 0.48 +0.6
4,753,546 + IAI46_22320 0.51 +0.6
4,753,547 - IAI46_22320 0.51 +0.8
4,753,547 - IAI46_22320 0.51 +1.2
4,753,547 - IAI46_22320 0.51 +0.2
4,753,547 - IAI46_22320 0.51 +0.4
4,753,547 - IAI46_22320 0.51 +1.1
4,753,547 - IAI46_22320 0.51 -0.7
4,753,549 + IAI46_22320 0.51 -0.2
4,753,550 - IAI46_22320 0.51 +0.8
4,753,550 - IAI46_22320 0.51 +0.0
4,753,567 + IAI46_22320 0.52 +0.2
4,753,568 - IAI46_22320 0.52 -0.4
4,753,585 + IAI46_22320 0.54 -2.7

Or see this region's nucleotide sequence