Strain Fitness in Serratia liquefaciens MT49 around IAI46_16035

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16030 and IAI46_16035 are separated by 181 nucleotidesIAI46_16035 and IAI46_16040 are separated by 32 nucleotides IAI46_16030: IAI46_16030 - Tar ligand binding domain-containing protein, at 3,361,853 to 3,363,523 _16030 IAI46_16035: IAI46_16035 - chemotaxis protein CheW, at 3,363,705 to 3,364,205 _16035 IAI46_16040: IAI46_16040 - chemotaxis protein CheA, at 3,364,238 to 3,366,211 _16040 Position (kb) 3363 3364 3365Strain fitness (log2 ratio) -2 -1 0 1 2at 3362.749 kb on + strand, within IAI46_16030at 3362.749 kb on + strand, within IAI46_16030at 3362.915 kb on + strand, within IAI46_16030at 3362.965 kb on + strand, within IAI46_16030at 3362.965 kb on + strand, within IAI46_16030at 3362.965 kb on + strand, within IAI46_16030at 3362.965 kb on + strand, within IAI46_16030at 3362.966 kb on - strand, within IAI46_16030at 3362.966 kb on - strand, within IAI46_16030at 3362.966 kb on - strand, within IAI46_16030at 3362.991 kb on + strand, within IAI46_16030at 3362.992 kb on - strand, within IAI46_16030at 3363.024 kb on + strand, within IAI46_16030at 3363.024 kb on + strand, within IAI46_16030at 3363.024 kb on + strand, within IAI46_16030at 3363.024 kb on + strand, within IAI46_16030at 3363.024 kb on + strand, within IAI46_16030at 3363.025 kb on - strand, within IAI46_16030at 3363.025 kb on - strand, within IAI46_16030at 3363.025 kb on - strand, within IAI46_16030at 3363.138 kb on + strand, within IAI46_16030at 3363.210 kb on + strand, within IAI46_16030at 3363.210 kb on + strand, within IAI46_16030at 3363.211 kb on - strand, within IAI46_16030at 3363.211 kb on - strand, within IAI46_16030at 3363.563 kb on + strandat 3363.621 kb on + strandat 3363.622 kb on - strandat 3364.056 kb on - strand, within IAI46_16035at 3364.109 kb on + strand, within IAI46_16035at 3364.139 kb on + strand, within IAI46_16035at 3364.964 kb on - strand, within IAI46_16040

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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3,362,749 + IAI46_16030 0.54 +0.5
3,362,749 + IAI46_16030 0.54 +0.8
3,362,915 + IAI46_16030 0.64 +0.5
3,362,965 + IAI46_16030 0.67 -1.1
3,362,965 + IAI46_16030 0.67 +0.5
3,362,965 + IAI46_16030 0.67 -1.8
3,362,965 + IAI46_16030 0.67 +0.4
3,362,966 - IAI46_16030 0.67 +1.1
3,362,966 - IAI46_16030 0.67 +1.8
3,362,966 - IAI46_16030 0.67 +0.2
3,362,991 + IAI46_16030 0.68 +0.4
3,362,992 - IAI46_16030 0.68 +1.0
3,363,024 + IAI46_16030 0.70 -0.1
3,363,024 + IAI46_16030 0.70 -1.5
3,363,024 + IAI46_16030 0.70 -0.7
3,363,024 + IAI46_16030 0.70 -0.2
3,363,024 + IAI46_16030 0.70 +0.7
3,363,025 - IAI46_16030 0.70 +0.5
3,363,025 - IAI46_16030 0.70 +1.5
3,363,025 - IAI46_16030 0.70 -0.9
3,363,138 + IAI46_16030 0.77 +0.9
3,363,210 + IAI46_16030 0.81 -0.2
3,363,210 + IAI46_16030 0.81 +0.2
3,363,211 - IAI46_16030 0.81 +0.8
3,363,211 - IAI46_16030 0.81 +0.1
3,363,563 + -0.4
3,363,621 + +0.1
3,363,622 - -0.8
3,364,056 - IAI46_16035 0.70 -0.2
3,364,109 + IAI46_16035 0.81 +0.1
3,364,139 + IAI46_16035 0.87 +0.5
3,364,964 - IAI46_16040 0.37 -1.8

Or see this region's nucleotide sequence