Strain Fitness in Serratia liquefaciens MT49 around IAI46_15250

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15245 and IAI46_15250 are separated by 9 nucleotidesIAI46_15250 and IAI46_15255 overlap by 4 nucleotidesIAI46_15255 and IAI46_15260 are separated by 1 nucleotides IAI46_15245: IAI46_15245 - hypothetical protein, at 3,195,502 to 3,196,341 _15245 IAI46_15250: IAI46_15250 - hypothetical protein, at 3,196,351 to 3,196,872 _15250 IAI46_15255: IAI46_15255 - Lar family restriction alleviation protein, at 3,196,869 to 3,197,174 _15255 IAI46_15260: IAI46_15260 - hypothetical protein, at 3,197,176 to 3,197,541 _15260 Position (kb) 3196 3197Strain fitness (log2 ratio) -2 -1 0 1at 3195.691 kb on + strand, within IAI46_15245at 3195.691 kb on + strand, within IAI46_15245at 3195.692 kb on - strand, within IAI46_15245at 3195.697 kb on + strand, within IAI46_15245at 3195.697 kb on + strand, within IAI46_15245at 3195.697 kb on + strand, within IAI46_15245at 3195.697 kb on + strand, within IAI46_15245at 3195.697 kb on + strand, within IAI46_15245at 3195.697 kb on + strand, within IAI46_15245at 3195.697 kb on + strand, within IAI46_15245at 3195.697 kb on + strand, within IAI46_15245at 3195.698 kb on - strand, within IAI46_15245at 3195.698 kb on - strand, within IAI46_15245at 3195.698 kb on - strand, within IAI46_15245at 3195.703 kb on + strand, within IAI46_15245at 3195.704 kb on - strand, within IAI46_15245at 3195.704 kb on - strand, within IAI46_15245at 3195.710 kb on + strand, within IAI46_15245at 3195.711 kb on - strand, within IAI46_15245at 3195.724 kb on + strand, within IAI46_15245at 3195.817 kb on - strand, within IAI46_15245at 3195.841 kb on - strand, within IAI46_15245at 3195.859 kb on - strand, within IAI46_15245at 3195.988 kb on - strand, within IAI46_15245at 3196.001 kb on - strand, within IAI46_15245at 3196.071 kb on - strand, within IAI46_15245at 3196.085 kb on - strand, within IAI46_15245at 3196.085 kb on - strand, within IAI46_15245at 3196.183 kb on + strand, within IAI46_15245at 3196.290 kb on + strandat 3196.291 kb on - strandat 3196.339 kb on + strandat 3196.375 kb on + strandat 3196.439 kb on - strand, within IAI46_15250at 3196.549 kb on + strand, within IAI46_15250at 3196.814 kb on - strand, within IAI46_15250at 3196.904 kb on + strand, within IAI46_15255at 3196.956 kb on + strand, within IAI46_15255at 3196.989 kb on + strand, within IAI46_15255at 3196.989 kb on + strand, within IAI46_15255at 3196.989 kb on + strand, within IAI46_15255at 3196.989 kb on + strand, within IAI46_15255at 3196.990 kb on - strand, within IAI46_15255at 3197.054 kb on + strand, within IAI46_15255at 3197.112 kb on - strand, within IAI46_15255at 3197.172 kb on + strandat 3197.271 kb on + strand, within IAI46_15260at 3197.271 kb on + strand, within IAI46_15260at 3197.271 kb on + strand, within IAI46_15260at 3197.271 kb on + strand, within IAI46_15260at 3197.271 kb on + strand, within IAI46_15260at 3197.271 kb on + strand, within IAI46_15260at 3197.272 kb on - strand, within IAI46_15260at 3197.272 kb on - strand, within IAI46_15260at 3197.272 kb on - strand, within IAI46_15260at 3197.273 kb on + strand, within IAI46_15260at 3197.273 kb on + strand, within IAI46_15260at 3197.274 kb on - strand, within IAI46_15260at 3197.274 kb on - strand, within IAI46_15260at 3197.274 kb on - strand, within IAI46_15260

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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3,195,691 + IAI46_15245 0.23 -0.7
3,195,691 + IAI46_15245 0.23 +0.1
3,195,692 - IAI46_15245 0.23 -1.0
3,195,697 + IAI46_15245 0.23 +0.6
3,195,697 + IAI46_15245 0.23 -0.8
3,195,697 + IAI46_15245 0.23 +0.6
3,195,697 + IAI46_15245 0.23 -0.1
3,195,697 + IAI46_15245 0.23 +1.3
3,195,697 + IAI46_15245 0.23 -0.8
3,195,697 + IAI46_15245 0.23 -0.3
3,195,697 + IAI46_15245 0.23 -0.0
3,195,698 - IAI46_15245 0.23 +0.6
3,195,698 - IAI46_15245 0.23 +0.1
3,195,698 - IAI46_15245 0.23 +1.1
3,195,703 + IAI46_15245 0.24 +0.5
3,195,704 - IAI46_15245 0.24 -0.9
3,195,704 - IAI46_15245 0.24 -0.1
3,195,710 + IAI46_15245 0.25 -0.4
3,195,711 - IAI46_15245 0.25 +1.0
3,195,724 + IAI46_15245 0.26 +1.0
3,195,817 - IAI46_15245 0.38 -1.0
3,195,841 - IAI46_15245 0.40 -0.9
3,195,859 - IAI46_15245 0.42 +0.4
3,195,988 - IAI46_15245 0.58 +0.6
3,196,001 - IAI46_15245 0.59 -0.0
3,196,071 - IAI46_15245 0.68 +0.5
3,196,085 - IAI46_15245 0.69 +0.3
3,196,085 - IAI46_15245 0.69 +0.2
3,196,183 + IAI46_15245 0.81 +0.3
3,196,290 + +0.6
3,196,291 - +1.7
3,196,339 + -0.8
3,196,375 + -1.9
3,196,439 - IAI46_15250 0.17 -0.3
3,196,549 + IAI46_15250 0.38 +0.3
3,196,814 - IAI46_15250 0.89 -0.5
3,196,904 + IAI46_15255 0.11 +0.3
3,196,956 + IAI46_15255 0.28 -0.6
3,196,989 + IAI46_15255 0.39 +0.8
3,196,989 + IAI46_15255 0.39 +0.2
3,196,989 + IAI46_15255 0.39 -1.0
3,196,989 + IAI46_15255 0.39 +0.7
3,196,990 - IAI46_15255 0.40 +0.1
3,197,054 + IAI46_15255 0.60 +0.2
3,197,112 - IAI46_15255 0.79 +0.8
3,197,172 + +0.8
3,197,271 + IAI46_15260 0.26 +0.3
3,197,271 + IAI46_15260 0.26 +0.7
3,197,271 + IAI46_15260 0.26 +0.9
3,197,271 + IAI46_15260 0.26 -1.9
3,197,271 + IAI46_15260 0.26 +0.2
3,197,271 + IAI46_15260 0.26 +0.0
3,197,272 - IAI46_15260 0.26 +0.7
3,197,272 - IAI46_15260 0.26 +1.0
3,197,272 - IAI46_15260 0.26 -1.0
3,197,273 + IAI46_15260 0.27 +0.3
3,197,273 + IAI46_15260 0.27 +1.2
3,197,274 - IAI46_15260 0.27 -0.5
3,197,274 - IAI46_15260 0.27 +0.2
3,197,274 - IAI46_15260 0.27 -1.0

Or see this region's nucleotide sequence