Strain Fitness in Serratia liquefaciens MT49 around IAI46_14270

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14265 and IAI46_14270 are separated by 158 nucleotidesIAI46_14270 and IAI46_14275 are separated by 96 nucleotidesIAI46_14275 and IAI46_14285 are separated by 322 nucleotides IAI46_14265: IAI46_14265 - formyltetrahydrofolate deformylase, at 3,030,102 to 3,030,950 _14265 IAI46_14270: IAI46_14270 - tRNA-Tyr, at 3,031,109 to 3,031,193 _14270 IAI46_14275: IAI46_14275 - tRNA-Tyr, at 3,031,290 to 3,031,374 _14275 IAI46_14285: IAI46_14285 - TIGR00730 family Rossman fold protein, at 3,031,697 to 3,032,269 _14285 Position (kb) 3031 3032Strain fitness (log2 ratio) -1 0 1 2at 3030.189 kb on + strand, within IAI46_14265at 3030.189 kb on + strand, within IAI46_14265at 3030.190 kb on - strand, within IAI46_14265at 3030.191 kb on + strand, within IAI46_14265at 3030.191 kb on + strand, within IAI46_14265at 3030.192 kb on - strand, within IAI46_14265at 3030.255 kb on - strand, within IAI46_14265at 3030.347 kb on + strand, within IAI46_14265at 3030.594 kb on + strand, within IAI46_14265at 3030.613 kb on - strand, within IAI46_14265at 3030.615 kb on - strand, within IAI46_14265at 3030.615 kb on - strand, within IAI46_14265at 3030.712 kb on - strand, within IAI46_14265at 3030.762 kb on + strand, within IAI46_14265at 3030.763 kb on - strand, within IAI46_14265at 3030.828 kb on + strand, within IAI46_14265at 3030.828 kb on + strand, within IAI46_14265at 3030.829 kb on - strand, within IAI46_14265at 3030.843 kb on - strand, within IAI46_14265at 3030.895 kb on - strandat 3030.916 kb on + strandat 3030.916 kb on + strandat 3030.916 kb on + strandat 3030.922 kb on + strandat 3030.923 kb on - strandat 3030.923 kb on - strandat 3030.923 kb on - strandat 3030.949 kb on - strandat 3031.060 kb on + strandat 3031.061 kb on - strandat 3031.284 kb on + strandat 3031.381 kb on + strandat 3031.381 kb on + strandat 3031.381 kb on + strandat 3031.381 kb on + strandat 3031.526 kb on + strandat 3031.553 kb on - strandat 3031.553 kb on - strandat 3031.553 kb on - strandat 3031.600 kb on - strandat 3031.657 kb on + strandat 3032.023 kb on - strand, within IAI46_14285at 3032.114 kb on + strand, within IAI46_14285at 3032.162 kb on - strand, within IAI46_14285at 3032.174 kb on + strand, within IAI46_14285

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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3,030,189 + IAI46_14265 0.10 -0.4
3,030,189 + IAI46_14265 0.10 +0.3
3,030,190 - IAI46_14265 0.10 -0.6
3,030,191 + IAI46_14265 0.10 +0.2
3,030,191 + IAI46_14265 0.10 +0.6
3,030,192 - IAI46_14265 0.11 -0.6
3,030,255 - IAI46_14265 0.18 +0.1
3,030,347 + IAI46_14265 0.29 +1.0
3,030,594 + IAI46_14265 0.58 +0.2
3,030,613 - IAI46_14265 0.60 +1.0
3,030,615 - IAI46_14265 0.60 +0.1
3,030,615 - IAI46_14265 0.60 +0.7
3,030,712 - IAI46_14265 0.72 -0.8
3,030,762 + IAI46_14265 0.78 +0.6
3,030,763 - IAI46_14265 0.78 +0.5
3,030,828 + IAI46_14265 0.86 +0.7
3,030,828 + IAI46_14265 0.86 +0.7
3,030,829 - IAI46_14265 0.86 +0.6
3,030,843 - IAI46_14265 0.87 -1.4
3,030,895 - +0.3
3,030,916 + +0.2
3,030,916 + +0.2
3,030,916 + +1.4
3,030,922 + -0.4
3,030,923 - +1.4
3,030,923 - -0.9
3,030,923 - +1.3
3,030,949 - +0.4
3,031,060 + -0.6
3,031,061 - +2.7
3,031,284 + -0.1
3,031,381 + +0.5
3,031,381 + -0.2
3,031,381 + -0.0
3,031,381 + +0.2
3,031,526 + -0.5
3,031,553 - -0.1
3,031,553 - +0.5
3,031,553 - -1.4
3,031,600 - +0.7
3,031,657 + +0.0
3,032,023 - IAI46_14285 0.57 +0.3
3,032,114 + IAI46_14285 0.73 +1.2
3,032,162 - IAI46_14285 0.81 -0.3
3,032,174 + IAI46_14285 0.83 -0.2

Or see this region's nucleotide sequence