Strain Fitness in Serratia liquefaciens MT49 around IAI46_12470

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12465 and IAI46_12470 are separated by 41 nucleotidesIAI46_12470 and IAI46_12475 are separated by 227 nucleotides IAI46_12465: IAI46_12465 - aldehyde dehydrogenase family protein, at 2,648,410 to 2,649,897 _12465 IAI46_12470: IAI46_12470 - VOC family protein, at 2,649,939 to 2,650,937 _12470 IAI46_12475: IAI46_12475 - MFS transporter, at 2,651,165 to 2,652,373 _12475 Position (kb) 2649 2650 2651Strain fitness (log2 ratio) -2 -1 0 1at 2649.282 kb on + strand, within IAI46_12465at 2649.337 kb on + strand, within IAI46_12465at 2649.510 kb on - strand, within IAI46_12465at 2649.547 kb on + strand, within IAI46_12465at 2649.547 kb on + strand, within IAI46_12465at 2649.762 kb on - strandat 2649.862 kb on + strandat 2649.963 kb on + strandat 2650.042 kb on - strand, within IAI46_12470at 2650.274 kb on + strand, within IAI46_12470at 2650.315 kb on + strand, within IAI46_12470at 2650.316 kb on - strand, within IAI46_12470at 2650.316 kb on - strand, within IAI46_12470at 2650.476 kb on + strand, within IAI46_12470at 2650.476 kb on + strand, within IAI46_12470at 2650.476 kb on + strand, within IAI46_12470at 2650.582 kb on - strand, within IAI46_12470at 2650.583 kb on + strand, within IAI46_12470at 2650.696 kb on - strand, within IAI46_12470at 2650.728 kb on - strand, within IAI46_12470at 2650.810 kb on + strand, within IAI46_12470at 2650.810 kb on + strand, within IAI46_12470at 2650.920 kb on + strandat 2650.921 kb on - strandat 2651.005 kb on + strandat 2651.018 kb on + strandat 2651.272 kb on + strandat 2651.273 kb on - strandat 2651.273 kb on - strandat 2651.283 kb on + strandat 2651.300 kb on + strand, within IAI46_12475at 2651.327 kb on - strand, within IAI46_12475at 2651.328 kb on + strand, within IAI46_12475at 2651.332 kb on + strand, within IAI46_12475at 2651.429 kb on - strand, within IAI46_12475at 2651.448 kb on + strand, within IAI46_12475at 2651.461 kb on + strand, within IAI46_12475at 2651.489 kb on - strand, within IAI46_12475at 2651.535 kb on + strand, within IAI46_12475at 2651.535 kb on + strand, within IAI46_12475at 2651.536 kb on - strand, within IAI46_12475at 2651.641 kb on - strand, within IAI46_12475at 2651.854 kb on + strand, within IAI46_12475at 2651.886 kb on + strand, within IAI46_12475at 2651.886 kb on + strand, within IAI46_12475

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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2,649,282 + IAI46_12465 0.59 -0.3
2,649,337 + IAI46_12465 0.62 +0.1
2,649,510 - IAI46_12465 0.74 -0.2
2,649,547 + IAI46_12465 0.76 +0.7
2,649,547 + IAI46_12465 0.76 +0.2
2,649,762 - -1.1
2,649,862 + +1.0
2,649,963 + +0.0
2,650,042 - IAI46_12470 0.10 +0.6
2,650,274 + IAI46_12470 0.34 -0.2
2,650,315 + IAI46_12470 0.38 -0.1
2,650,316 - IAI46_12470 0.38 +0.8
2,650,316 - IAI46_12470 0.38 +0.4
2,650,476 + IAI46_12470 0.54 +0.3
2,650,476 + IAI46_12470 0.54 +1.1
2,650,476 + IAI46_12470 0.54 -0.1
2,650,582 - IAI46_12470 0.64 -0.7
2,650,583 + IAI46_12470 0.64 +0.3
2,650,696 - IAI46_12470 0.76 -1.9
2,650,728 - IAI46_12470 0.79 -0.7
2,650,810 + IAI46_12470 0.87 +0.3
2,650,810 + IAI46_12470 0.87 -0.9
2,650,920 + -0.9
2,650,921 - +1.1
2,651,005 + +1.0
2,651,018 + +0.0
2,651,272 + +0.9
2,651,273 - -1.3
2,651,273 - -1.3
2,651,283 + -0.5
2,651,300 + IAI46_12475 0.11 +0.6
2,651,327 - IAI46_12475 0.13 -0.5
2,651,328 + IAI46_12475 0.13 +0.6
2,651,332 + IAI46_12475 0.14 -0.1
2,651,429 - IAI46_12475 0.22 -0.6
2,651,448 + IAI46_12475 0.23 +0.3
2,651,461 + IAI46_12475 0.24 -0.2
2,651,489 - IAI46_12475 0.27 -1.1
2,651,535 + IAI46_12475 0.31 +0.9
2,651,535 + IAI46_12475 0.31 +0.1
2,651,536 - IAI46_12475 0.31 -0.2
2,651,641 - IAI46_12475 0.39 +0.6
2,651,854 + IAI46_12475 0.57 +1.3
2,651,886 + IAI46_12475 0.60 +1.0
2,651,886 + IAI46_12475 0.60 +0.6

Or see this region's nucleotide sequence