Strain Fitness in Serratia liquefaciens MT49 around IAI46_09115

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09110 and IAI46_09115 are separated by 15 nucleotidesIAI46_09115 and IAI46_09120 are separated by 9 nucleotides IAI46_09110: IAI46_09110 - 5-aminolevulinate synthase, at 1,951,713 to 1,952,924 _09110 IAI46_09115: IAI46_09115 - acetyl-CoA C-acyltransferase, at 1,952,940 to 1,954,151 _09115 IAI46_09120: IAI46_09120 - 3-hydroxybutyryl-CoA dehydrogenase, at 1,954,161 to 1,955,690 _09120 Position (kb) 1952 1953 1954 1955Strain fitness (log2 ratio) -1 0 1at 1951.941 kb on - strand, within IAI46_09110at 1951.941 kb on - strand, within IAI46_09110at 1952.136 kb on + strand, within IAI46_09110at 1952.159 kb on + strand, within IAI46_09110at 1952.162 kb on - strand, within IAI46_09110at 1952.162 kb on - strand, within IAI46_09110at 1952.162 kb on - strand, within IAI46_09110at 1952.162 kb on - strand, within IAI46_09110at 1952.293 kb on + strand, within IAI46_09110at 1952.365 kb on + strand, within IAI46_09110at 1952.366 kb on - strand, within IAI46_09110at 1952.488 kb on + strand, within IAI46_09110at 1952.489 kb on - strand, within IAI46_09110at 1952.672 kb on + strand, within IAI46_09110at 1952.761 kb on + strand, within IAI46_09110at 1952.761 kb on + strand, within IAI46_09110at 1952.762 kb on - strand, within IAI46_09110at 1952.828 kb on + strandat 1952.917 kb on - strandat 1953.009 kb on + strandat 1953.219 kb on - strand, within IAI46_09115at 1953.225 kb on + strand, within IAI46_09115at 1953.337 kb on + strand, within IAI46_09115at 1953.337 kb on + strand, within IAI46_09115at 1953.338 kb on - strand, within IAI46_09115at 1953.769 kb on + strand, within IAI46_09115at 1953.770 kb on - strand, within IAI46_09115at 1953.847 kb on + strand, within IAI46_09115at 1953.948 kb on - strand, within IAI46_09115at 1954.127 kb on - strandat 1954.207 kb on + strandat 1954.248 kb on - strandat 1954.250 kb on + strandat 1954.250 kb on + strandat 1954.316 kb on - strand, within IAI46_09120at 1954.442 kb on + strand, within IAI46_09120at 1954.552 kb on + strand, within IAI46_09120at 1954.581 kb on - strand, within IAI46_09120at 1954.593 kb on + strand, within IAI46_09120at 1954.788 kb on - strand, within IAI46_09120at 1954.918 kb on + strand, within IAI46_09120at 1954.919 kb on - strand, within IAI46_09120at 1954.919 kb on - strand, within IAI46_09120at 1954.958 kb on + strand, within IAI46_09120at 1954.959 kb on - strand, within IAI46_09120at 1954.959 kb on - strand, within IAI46_09120at 1954.959 kb on - strand, within IAI46_09120

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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1,951,941 - IAI46_09110 0.19 +0.5
1,951,941 - IAI46_09110 0.19 +0.1
1,952,136 + IAI46_09110 0.35 +1.2
1,952,159 + IAI46_09110 0.37 -0.6
1,952,162 - IAI46_09110 0.37 +0.7
1,952,162 - IAI46_09110 0.37 +0.6
1,952,162 - IAI46_09110 0.37 +0.2
1,952,162 - IAI46_09110 0.37 +0.3
1,952,293 + IAI46_09110 0.48 +0.0
1,952,365 + IAI46_09110 0.54 +0.6
1,952,366 - IAI46_09110 0.54 +0.5
1,952,488 + IAI46_09110 0.64 +0.3
1,952,489 - IAI46_09110 0.64 -0.5
1,952,672 + IAI46_09110 0.79 +0.6
1,952,761 + IAI46_09110 0.86 +1.3
1,952,761 + IAI46_09110 0.86 +0.1
1,952,762 - IAI46_09110 0.87 +0.0
1,952,828 + +1.2
1,952,917 - -0.7
1,953,009 + -0.5
1,953,219 - IAI46_09115 0.23 -0.9
1,953,225 + IAI46_09115 0.24 +1.1
1,953,337 + IAI46_09115 0.33 +0.9
1,953,337 + IAI46_09115 0.33 -1.1
1,953,338 - IAI46_09115 0.33 -0.5
1,953,769 + IAI46_09115 0.68 +0.8
1,953,770 - IAI46_09115 0.68 -0.3
1,953,847 + IAI46_09115 0.75 +0.0
1,953,948 - IAI46_09115 0.83 +0.2
1,954,127 - -0.5
1,954,207 + +0.3
1,954,248 - +0.6
1,954,250 + +1.2
1,954,250 + -0.5
1,954,316 - IAI46_09120 0.10 +0.7
1,954,442 + IAI46_09120 0.18 +0.2
1,954,552 + IAI46_09120 0.26 -0.5
1,954,581 - IAI46_09120 0.27 +0.0
1,954,593 + IAI46_09120 0.28 -0.5
1,954,788 - IAI46_09120 0.41 -0.6
1,954,918 + IAI46_09120 0.49 -0.9
1,954,919 - IAI46_09120 0.50 +1.2
1,954,919 - IAI46_09120 0.50 +0.4
1,954,958 + IAI46_09120 0.52 -0.3
1,954,959 - IAI46_09120 0.52 -0.6
1,954,959 - IAI46_09120 0.52 +0.0
1,954,959 - IAI46_09120 0.52 +0.2

Or see this region's nucleotide sequence