Strain Fitness in Serratia liquefaciens MT49 around IAI46_08630

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08625 and IAI46_08630 are separated by 40 nucleotidesIAI46_08630 and IAI46_08635 are separated by 101 nucleotides IAI46_08625: IAI46_08625 - L-asparaginase 2, at 1,843,487 to 1,844,533 _08625 IAI46_08630: IAI46_08630 - hypothetical protein, at 1,844,574 to 1,844,714 _08630 IAI46_08635: IAI46_08635 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 1,844,816 to 1,845,901 _08635 Position (kb) 1844 1845Strain fitness (log2 ratio) -3 -2 -1 0 1at 1843.625 kb on + strand, within IAI46_08625at 1843.625 kb on + strand, within IAI46_08625at 1843.625 kb on + strand, within IAI46_08625at 1843.626 kb on - strand, within IAI46_08625at 1843.626 kb on - strand, within IAI46_08625at 1843.669 kb on - strand, within IAI46_08625at 1843.841 kb on + strand, within IAI46_08625at 1843.941 kb on - strand, within IAI46_08625at 1843.942 kb on + strand, within IAI46_08625at 1844.044 kb on + strand, within IAI46_08625at 1844.044 kb on + strand, within IAI46_08625at 1844.047 kb on + strand, within IAI46_08625at 1844.048 kb on - strand, within IAI46_08625at 1844.048 kb on - strand, within IAI46_08625at 1844.170 kb on + strand, within IAI46_08625at 1844.200 kb on + strand, within IAI46_08625at 1844.200 kb on + strand, within IAI46_08625at 1844.201 kb on - strand, within IAI46_08625at 1844.201 kb on - strand, within IAI46_08625at 1844.205 kb on - strand, within IAI46_08625at 1844.205 kb on - strand, within IAI46_08625at 1844.211 kb on - strand, within IAI46_08625at 1844.259 kb on - strand, within IAI46_08625at 1844.259 kb on - strand, within IAI46_08625at 1844.317 kb on + strand, within IAI46_08625at 1844.318 kb on - strand, within IAI46_08625at 1844.339 kb on - strand, within IAI46_08625at 1844.522 kb on - strandat 1844.586 kb on + strandat 1844.713 kb on - strandat 1844.756 kb on - strandat 1844.766 kb on + strandat 1844.766 kb on + strandat 1844.782 kb on + strandat 1844.944 kb on + strand, within IAI46_08635at 1844.945 kb on - strand, within IAI46_08635at 1844.954 kb on - strand, within IAI46_08635at 1845.101 kb on + strand, within IAI46_08635at 1845.102 kb on - strand, within IAI46_08635at 1845.231 kb on + strand, within IAI46_08635at 1845.231 kb on + strand, within IAI46_08635at 1845.231 kb on + strand, within IAI46_08635at 1845.248 kb on + strand, within IAI46_08635at 1845.249 kb on - strand, within IAI46_08635at 1845.300 kb on + strand, within IAI46_08635at 1845.441 kb on + strand, within IAI46_08635at 1845.441 kb on + strand, within IAI46_08635at 1845.495 kb on - strand, within IAI46_08635at 1845.552 kb on - strand, within IAI46_08635at 1845.668 kb on + strand, within IAI46_08635

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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1,843,625 + IAI46_08625 0.13 +0.2
1,843,625 + IAI46_08625 0.13 +0.8
1,843,625 + IAI46_08625 0.13 +0.5
1,843,626 - IAI46_08625 0.13 -0.4
1,843,626 - IAI46_08625 0.13 +0.3
1,843,669 - IAI46_08625 0.17 +0.1
1,843,841 + IAI46_08625 0.34 +0.3
1,843,941 - IAI46_08625 0.43 +0.2
1,843,942 + IAI46_08625 0.43 -0.6
1,844,044 + IAI46_08625 0.53 +0.4
1,844,044 + IAI46_08625 0.53 +0.7
1,844,047 + IAI46_08625 0.53 +0.1
1,844,048 - IAI46_08625 0.54 +0.4
1,844,048 - IAI46_08625 0.54 -0.4
1,844,170 + IAI46_08625 0.65 +0.2
1,844,200 + IAI46_08625 0.68 -0.1
1,844,200 + IAI46_08625 0.68 -0.5
1,844,201 - IAI46_08625 0.68 +0.4
1,844,201 - IAI46_08625 0.68 +0.1
1,844,205 - IAI46_08625 0.69 +0.6
1,844,205 - IAI46_08625 0.69 -0.2
1,844,211 - IAI46_08625 0.69 +0.1
1,844,259 - IAI46_08625 0.74 -1.8
1,844,259 - IAI46_08625 0.74 -0.8
1,844,317 + IAI46_08625 0.79 -0.1
1,844,318 - IAI46_08625 0.79 -0.6
1,844,339 - IAI46_08625 0.81 +0.6
1,844,522 - -0.8
1,844,586 + -0.1
1,844,713 - +1.3
1,844,756 - -2.9
1,844,766 + +0.5
1,844,766 + +0.8
1,844,782 + +0.1
1,844,944 + IAI46_08635 0.12 -2.4
1,844,945 - IAI46_08635 0.12 -2.4
1,844,954 - IAI46_08635 0.13 -0.1
1,845,101 + IAI46_08635 0.26 -1.7
1,845,102 - IAI46_08635 0.26 -0.3
1,845,231 + IAI46_08635 0.38 +1.0
1,845,231 + IAI46_08635 0.38 -0.9
1,845,231 + IAI46_08635 0.38 -2.3
1,845,248 + IAI46_08635 0.40 -1.0
1,845,249 - IAI46_08635 0.40 -1.7
1,845,300 + IAI46_08635 0.45 -1.1
1,845,441 + IAI46_08635 0.58 -1.7
1,845,441 + IAI46_08635 0.58 +1.3
1,845,495 - IAI46_08635 0.63 -2.4
1,845,552 - IAI46_08635 0.68 -1.2
1,845,668 + IAI46_08635 0.78 -0.9

Or see this region's nucleotide sequence