Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_04730 and IAI46_04735 are separated by 62 nucleotides IAI46_04735 and IAI46_04740 are separated by 11 nucleotides IAI46_04740 and IAI46_04745 overlap by 1 nucleotides
IAI46_04730: IAI46_04730 - ABC transporter substrate-binding protein, at 1,014,520 to 1,015,461
_04730
IAI46_04735: IAI46_04735 - D-lyxose/D-mannose family sugar isomerase, at 1,015,524 to 1,016,210
_04735
IAI46_04740: IAI46_04740 - ketose 1,6-bisphosphate aldolase, at 1,016,222 to 1,017,082
_04740
IAI46_04745: IAI46_04745 - carbohydrate kinase family protein, at 1,017,082 to 1,018,095
_04745
IAI46_04750: IAI46_04750 - response regulator transcription factor, at 1,018,070 to 1,018,810
_04750
Position (kb) 1016
1017
1018 Strain fitness (log2 ratio) -1
0
1
2 at 1015.420 kb on - strand at 1015.420 kb on - strand at 1015.438 kb on + strand at 1015.439 kb on - strand at 1015.439 kb on - strand at 1015.459 kb on + strand at 1015.459 kb on + strand at 1015.483 kb on + strand at 1015.613 kb on + strand, within IAI46_04735 at 1015.614 kb on - strand, within IAI46_04735 at 1015.660 kb on + strand, within IAI46_04735 at 1015.771 kb on - strand, within IAI46_04735 at 1015.771 kb on - strand, within IAI46_04735 at 1015.771 kb on - strand, within IAI46_04735 at 1016.032 kb on - strand, within IAI46_04735 at 1016.032 kb on - strand, within IAI46_04735 at 1016.032 kb on - strand, within IAI46_04735 at 1016.141 kb on + strand, within IAI46_04735 at 1016.183 kb on + strand at 1016.190 kb on + strand at 1016.201 kb on + strand at 1016.209 kb on - strand at 1016.273 kb on + strand at 1016.366 kb on - strand, within IAI46_04740 at 1016.387 kb on + strand, within IAI46_04740 at 1016.549 kb on + strand, within IAI46_04740 at 1016.550 kb on - strand, within IAI46_04740 at 1016.660 kb on + strand, within IAI46_04740 at 1016.661 kb on - strand, within IAI46_04740 at 1016.661 kb on - strand, within IAI46_04740 at 1016.680 kb on + strand, within IAI46_04740 at 1016.680 kb on + strand, within IAI46_04740 at 1016.771 kb on + strand, within IAI46_04740 at 1016.772 kb on - strand, within IAI46_04740 at 1016.785 kb on + strand, within IAI46_04740 at 1016.785 kb on + strand, within IAI46_04740 at 1016.785 kb on + strand, within IAI46_04740 at 1016.785 kb on + strand, within IAI46_04740 at 1016.918 kb on + strand, within IAI46_04740 at 1016.918 kb on + strand, within IAI46_04740 at 1016.918 kb on + strand, within IAI46_04740 at 1016.918 kb on + strand, within IAI46_04740 at 1017.213 kb on + strand, within IAI46_04745 at 1017.213 kb on + strand, within IAI46_04745 at 1017.214 kb on - strand, within IAI46_04745 at 1017.301 kb on - strand, within IAI46_04745 at 1017.499 kb on + strand, within IAI46_04745 at 1018.029 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 1,015,420 - -0.1 1,015,420 - +0.8 1,015,438 + -1.0 1,015,439 - +1.4 1,015,439 - +2.2 1,015,459 + +0.6 1,015,459 + +0.4 1,015,483 + +0.4 1,015,613 + IAI46_04735 0.13 -0.2 1,015,614 - IAI46_04735 0.13 +2.2 1,015,660 + IAI46_04735 0.20 +0.2 1,015,771 - IAI46_04735 0.36 +0.4 1,015,771 - IAI46_04735 0.36 -0.0 1,015,771 - IAI46_04735 0.36 -0.9 1,016,032 - IAI46_04735 0.74 -0.3 1,016,032 - IAI46_04735 0.74 +0.9 1,016,032 - IAI46_04735 0.74 +1.5 1,016,141 + IAI46_04735 0.90 +0.3 1,016,183 + +0.1 1,016,190 + -1.2 1,016,201 + +0.3 1,016,209 - -0.3 1,016,273 + -0.0 1,016,366 - IAI46_04740 0.17 -0.5 1,016,387 + IAI46_04740 0.19 -0.1 1,016,549 + IAI46_04740 0.38 +0.3 1,016,550 - IAI46_04740 0.38 +1.6 1,016,660 + IAI46_04740 0.51 +0.9 1,016,661 - IAI46_04740 0.51 +0.7 1,016,661 - IAI46_04740 0.51 -1.4 1,016,680 + IAI46_04740 0.53 +0.2 1,016,680 + IAI46_04740 0.53 +0.2 1,016,771 + IAI46_04740 0.64 +0.3 1,016,772 - IAI46_04740 0.64 -0.0 1,016,785 + IAI46_04740 0.65 +0.0 1,016,785 + IAI46_04740 0.65 +0.4 1,016,785 + IAI46_04740 0.65 +0.2 1,016,785 + IAI46_04740 0.65 +0.0 1,016,918 + IAI46_04740 0.81 -0.5 1,016,918 + IAI46_04740 0.81 +0.2 1,016,918 + IAI46_04740 0.81 +0.5 1,016,918 + IAI46_04740 0.81 -0.7 1,017,213 + IAI46_04745 0.13 +0.5 1,017,213 + IAI46_04745 0.13 -0.4 1,017,214 - IAI46_04745 0.13 -1.1 1,017,301 - IAI46_04745 0.22 -0.4 1,017,499 + IAI46_04745 0.41 +1.0 1,018,029 + +0.3
Or see this region's nucleotide sequence