Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_04525 and IAI46_04530 are separated by 250 nucleotides IAI46_04530 and IAI46_04535 are separated by 111 nucleotides IAI46_04535 and IAI46_04540 are separated by 9 nucleotides IAI46_04540 and IAI46_04545 are separated by 106 nucleotides
IAI46_04525: IAI46_04525 - lipid IV(A) palmitoyltransferase PagP, at 977,161 to 977,754
_04525
IAI46_04530: IAI46_04530 - DUF2501 domain-containing protein, at 978,005 to 978,490
_04530
IAI46_04535: IAI46_04535 - DUF333 domain-containing protein, at 978,602 to 978,865
_04535
IAI46_04540: IAI46_04540 - hypothetical protein, at 978,875 to 979,492
_04540
IAI46_04545: IAI46_04545 - transporter, at 979,599 to 980,288
_04545
Position (kb) 978
979 Strain fitness (log2 ratio) -1
0
1 at 977.624 kb on - strand, within IAI46_04525 at 977.658 kb on + strand, within IAI46_04525 at 977.665 kb on + strand, within IAI46_04525 at 977.665 kb on + strand, within IAI46_04525 at 977.667 kb on + strand, within IAI46_04525 at 977.668 kb on - strand, within IAI46_04525 at 977.668 kb on - strand, within IAI46_04525 at 977.668 kb on - strand, within IAI46_04525 at 977.692 kb on + strand, within IAI46_04525 at 977.692 kb on + strand, within IAI46_04525 at 977.692 kb on + strand, within IAI46_04525 at 977.692 kb on + strand, within IAI46_04525 at 977.693 kb on - strand, within IAI46_04525 at 977.695 kb on - strand at 977.707 kb on + strand at 977.707 kb on + strand at 977.707 kb on + strand at 977.707 kb on + strand at 977.707 kb on + strand at 977.707 kb on + strand at 977.707 kb on + strand at 977.708 kb on - strand at 977.708 kb on - strand at 977.708 kb on - strand at 977.708 kb on - strand at 977.709 kb on + strand at 977.709 kb on + strand at 977.709 kb on + strand at 977.710 kb on - strand at 977.710 kb on - strand at 977.710 kb on - strand at 977.787 kb on - strand at 978.172 kb on - strand, within IAI46_04530 at 978.237 kb on - strand, within IAI46_04530 at 978.250 kb on + strand, within IAI46_04530 at 978.592 kb on + strand at 978.593 kb on - strand at 978.648 kb on + strand, within IAI46_04535 at 978.648 kb on + strand, within IAI46_04535 at 978.670 kb on + strand, within IAI46_04535 at 978.696 kb on + strand, within IAI46_04535 at 978.731 kb on + strand, within IAI46_04535 at 978.731 kb on + strand, within IAI46_04535 at 978.732 kb on - strand, within IAI46_04535 at 978.732 kb on - strand, within IAI46_04535 at 978.785 kb on + strand, within IAI46_04535 at 978.796 kb on + strand, within IAI46_04535 at 978.796 kb on + strand, within IAI46_04535 at 978.797 kb on - strand, within IAI46_04535 at 978.903 kb on + strand at 978.903 kb on + strand at 978.989 kb on - strand, within IAI46_04540 at 979.023 kb on + strand, within IAI46_04540 at 979.023 kb on + strand, within IAI46_04540 at 979.024 kb on - strand, within IAI46_04540 at 979.024 kb on - strand, within IAI46_04540 at 979.051 kb on + strand, within IAI46_04540 at 979.051 kb on + strand, within IAI46_04540 at 979.308 kb on + strand, within IAI46_04540 at 979.362 kb on + strand, within IAI46_04540 at 979.399 kb on + strand, within IAI46_04540 at 979.400 kb on - strand, within IAI46_04540 at 979.466 kb on + strand at 979.549 kb on - strand at 979.573 kb on + strand at 979.573 kb on + strand at 979.574 kb on - strand at 979.585 kb on - strand at 979.676 kb on + strand, within IAI46_04545 at 979.677 kb on - strand, within IAI46_04545 at 979.677 kb on - strand, within IAI46_04545 at 979.720 kb on + strand, within IAI46_04545 at 979.720 kb on + strand, within IAI46_04545 at 979.720 kb on + strand, within IAI46_04545 at 979.721 kb on - strand, within IAI46_04545 at 979.721 kb on - strand, within IAI46_04545 at 979.800 kb on - strand, within IAI46_04545 at 979.800 kb on - strand, within IAI46_04545
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 977,624 - IAI46_04525 0.78 +0.7 977,658 + IAI46_04525 0.84 +0.7 977,665 + IAI46_04525 0.85 -0.7 977,665 + IAI46_04525 0.85 +0.2 977,667 + IAI46_04525 0.85 +0.1 977,668 - IAI46_04525 0.85 +1.6 977,668 - IAI46_04525 0.85 +0.2 977,668 - IAI46_04525 0.85 +0.4 977,692 + IAI46_04525 0.89 -0.1 977,692 + IAI46_04525 0.89 -0.1 977,692 + IAI46_04525 0.89 +0.1 977,692 + IAI46_04525 0.89 -0.3 977,693 - IAI46_04525 0.90 +0.7 977,695 - -0.6 977,707 + +0.6 977,707 + +0.5 977,707 + +0.6 977,707 + +0.8 977,707 + +0.9 977,707 + +0.7 977,707 + +0.9 977,708 - +1.2 977,708 - +0.4 977,708 - +0.7 977,708 - +0.7 977,709 + +0.6 977,709 + -0.0 977,709 + +0.7 977,710 - +0.4 977,710 - -0.9 977,710 - +0.3 977,787 - +0.2 978,172 - IAI46_04530 0.34 +0.1 978,237 - IAI46_04530 0.48 -0.2 978,250 + IAI46_04530 0.50 +0.4 978,592 + -0.9 978,593 - +0.3 978,648 + IAI46_04535 0.17 -0.2 978,648 + IAI46_04535 0.17 +0.1 978,670 + IAI46_04535 0.26 -1.7 978,696 + IAI46_04535 0.36 +0.2 978,731 + IAI46_04535 0.49 +0.0 978,731 + IAI46_04535 0.49 +0.4 978,732 - IAI46_04535 0.49 +1.2 978,732 - IAI46_04535 0.49 +0.0 978,785 + IAI46_04535 0.69 +0.2 978,796 + IAI46_04535 0.73 +0.4 978,796 + IAI46_04535 0.73 -0.8 978,797 - IAI46_04535 0.74 -0.2 978,903 + +0.0 978,903 + -0.3 978,989 - IAI46_04540 0.18 +1.2 979,023 + IAI46_04540 0.24 +0.6 979,023 + IAI46_04540 0.24 +0.2 979,024 - IAI46_04540 0.24 +0.7 979,024 - IAI46_04540 0.24 +0.2 979,051 + IAI46_04540 0.28 -0.8 979,051 + IAI46_04540 0.28 -0.1 979,308 + IAI46_04540 0.70 +1.0 979,362 + IAI46_04540 0.79 +0.1 979,399 + IAI46_04540 0.85 +0.2 979,400 - IAI46_04540 0.85 -1.2 979,466 + -0.6 979,549 - +0.2 979,573 + -0.5 979,573 + +1.3 979,574 - -0.6 979,585 - +0.6 979,676 + IAI46_04545 0.11 +0.3 979,677 - IAI46_04545 0.11 +0.3 979,677 - IAI46_04545 0.11 +0.7 979,720 + IAI46_04545 0.18 +0.6 979,720 + IAI46_04545 0.18 +1.1 979,720 + IAI46_04545 0.18 +0.6 979,721 - IAI46_04545 0.18 +0.2 979,721 - IAI46_04545 0.18 -0.1 979,800 - IAI46_04545 0.29 -0.0 979,800 - IAI46_04545 0.29 +0.1
Or see this region's nucleotide sequence