Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_04450 and IAI46_04455 are separated by 303 nucleotides IAI46_04455 and IAI46_04460 are separated by 459 nucleotides
IAI46_04450: IAI46_04450 - ABC transporter substrate-binding protein, at 951,903 to 953,501
_04450
IAI46_04455: IAI46_04455 - DUF1471 domain-containing protein, at 953,805 to 954,059
_04455
IAI46_04460: IAI46_04460 - condensation protein, at 954,519 to 955,865
_04460
Position (kb) 953
954
955 Strain fitness (log2 ratio) -2
-1
0
1
2 at 952.828 kb on + strand, within IAI46_04450 at 952.828 kb on + strand, within IAI46_04450 at 952.853 kb on - strand, within IAI46_04450 at 952.893 kb on - strand, within IAI46_04450 at 952.936 kb on + strand, within IAI46_04450 at 952.937 kb on - strand, within IAI46_04450 at 953.009 kb on + strand, within IAI46_04450 at 953.086 kb on + strand, within IAI46_04450 at 953.087 kb on - strand, within IAI46_04450 at 953.111 kb on - strand, within IAI46_04450 at 953.188 kb on + strand, within IAI46_04450 at 953.225 kb on + strand, within IAI46_04450 at 953.226 kb on - strand, within IAI46_04450 at 953.323 kb on + strand, within IAI46_04450 at 953.323 kb on + strand, within IAI46_04450 at 953.323 kb on + strand, within IAI46_04450 at 953.324 kb on - strand, within IAI46_04450 at 953.345 kb on + strand at 953.408 kb on - strand at 953.502 kb on - strand at 953.577 kb on + strand at 953.578 kb on - strand at 953.666 kb on - strand at 953.668 kb on - strand at 953.673 kb on + strand at 953.673 kb on + strand at 953.673 kb on + strand at 953.673 kb on + strand at 953.674 kb on - strand at 953.674 kb on - strand at 953.677 kb on + strand at 953.677 kb on + strand at 953.677 kb on + strand at 953.715 kb on + strand at 953.751 kb on + strand at 953.751 kb on + strand at 953.751 kb on + strand at 953.751 kb on + strand at 953.752 kb on - strand at 953.752 kb on - strand at 953.790 kb on + strand at 953.790 kb on + strand at 953.791 kb on - strand at 953.802 kb on + strand at 953.802 kb on + strand at 953.803 kb on - strand at 953.805 kb on - strand at 953.805 kb on - strand at 953.816 kb on + strand at 953.820 kb on + strand at 953.997 kb on + strand, within IAI46_04455 at 954.005 kb on + strand, within IAI46_04455 at 954.051 kb on + strand at 954.057 kb on + strand at 954.090 kb on + strand at 954.134 kb on + strand at 954.156 kb on - strand at 954.156 kb on - strand at 954.334 kb on + strand at 954.334 kb on + strand at 954.334 kb on + strand at 954.335 kb on - strand at 954.375 kb on + strand at 954.375 kb on + strand at 954.375 kb on + strand at 954.375 kb on + strand at 954.376 kb on - strand at 954.376 kb on - strand at 954.376 kb on - strand at 954.376 kb on - strand at 954.378 kb on + strand at 954.378 kb on + strand at 954.379 kb on - strand at 954.379 kb on - strand at 954.431 kb on + strand at 954.432 kb on - strand at 954.495 kb on + strand at 954.511 kb on + strand at 954.512 kb on - strand at 954.515 kb on + strand at 954.516 kb on - strand at 954.516 kb on - strand at 954.516 kb on - strand at 954.516 kb on - strand at 954.591 kb on - strand at 954.591 kb on - strand at 954.640 kb on + strand at 954.640 kb on + strand at 954.641 kb on - strand at 954.793 kb on + strand, within IAI46_04460 at 954.793 kb on + strand, within IAI46_04460 at 954.794 kb on + strand, within IAI46_04460 at 954.830 kb on + strand, within IAI46_04460 at 954.871 kb on + strand, within IAI46_04460 at 954.871 kb on + strand, within IAI46_04460 at 954.933 kb on + strand, within IAI46_04460 at 954.934 kb on - strand, within IAI46_04460 at 954.950 kb on + strand, within IAI46_04460 at 954.951 kb on - strand, within IAI46_04460 at 954.951 kb on - strand, within IAI46_04460 at 954.951 kb on - strand, within IAI46_04460 at 955.005 kb on + strand, within IAI46_04460 at 955.006 kb on - strand, within IAI46_04460 at 955.006 kb on - strand, within IAI46_04460 at 955.007 kb on + strand, within IAI46_04460 at 955.007 kb on + strand, within IAI46_04460 at 955.007 kb on + strand, within IAI46_04460
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 952,828 + IAI46_04450 0.58 -1.6 952,828 + IAI46_04450 0.58 -0.5 952,853 - IAI46_04450 0.59 -0.3 952,893 - IAI46_04450 0.62 +0.8 952,936 + IAI46_04450 0.65 +0.1 952,937 - IAI46_04450 0.65 +0.7 953,009 + IAI46_04450 0.69 -0.1 953,086 + IAI46_04450 0.74 +2.0 953,087 - IAI46_04450 0.74 +0.4 953,111 - IAI46_04450 0.76 +0.2 953,188 + IAI46_04450 0.80 +0.0 953,225 + IAI46_04450 0.83 -0.0 953,226 - IAI46_04450 0.83 -1.4 953,323 + IAI46_04450 0.89 -0.1 953,323 + IAI46_04450 0.89 -0.4 953,323 + IAI46_04450 0.89 +0.6 953,324 - IAI46_04450 0.89 +0.9 953,345 + -0.7 953,408 - -0.4 953,502 - +0.3 953,577 + -0.5 953,578 - +0.0 953,666 - +0.5 953,668 - -1.4 953,673 + +1.3 953,673 + -0.0 953,673 + +0.3 953,673 + +0.1 953,674 - +0.2 953,674 - +0.4 953,677 + +0.1 953,677 + +0.1 953,677 + +0.8 953,715 + +0.5 953,751 + +0.8 953,751 + +0.1 953,751 + +0.4 953,751 + +1.7 953,752 - -0.4 953,752 - +0.9 953,790 + +0.8 953,790 + +0.4 953,791 - -0.3 953,802 + +0.3 953,802 + +0.1 953,803 - +0.9 953,805 - +0.4 953,805 - +0.6 953,816 + -0.8 953,820 + -0.7 953,997 + IAI46_04455 0.75 +0.7 954,005 + IAI46_04455 0.78 +0.3 954,051 + +0.5 954,057 + -0.1 954,090 + +0.8 954,134 + +0.0 954,156 - +0.4 954,156 - +0.5 954,334 + -0.4 954,334 + +0.3 954,334 + +0.1 954,335 - -0.2 954,375 + +1.4 954,375 + +0.7 954,375 + +0.3 954,375 + +0.2 954,376 - -0.2 954,376 - -2.2 954,376 - -0.4 954,376 - -0.6 954,378 + +0.5 954,378 + -0.7 954,379 - -0.3 954,379 - -0.1 954,431 + -0.2 954,432 - +0.4 954,495 + +0.8 954,511 + -0.2 954,512 - +0.1 954,515 + +0.9 954,516 - +0.3 954,516 - +0.7 954,516 - +0.1 954,516 - -2.1 954,591 - -0.2 954,591 - +0.5 954,640 + -0.5 954,640 + -0.3 954,641 - +1.2 954,793 + IAI46_04460 0.20 +0.8 954,793 + IAI46_04460 0.20 -0.5 954,794 + IAI46_04460 0.20 +0.1 954,830 + IAI46_04460 0.23 -0.2 954,871 + IAI46_04460 0.26 +0.5 954,871 + IAI46_04460 0.26 -0.6 954,933 + IAI46_04460 0.31 +0.3 954,934 - IAI46_04460 0.31 +0.9 954,950 + IAI46_04460 0.32 +0.6 954,951 - IAI46_04460 0.32 +0.4 954,951 - IAI46_04460 0.32 +0.0 954,951 - IAI46_04460 0.32 -0.2 955,005 + IAI46_04460 0.36 -0.1 955,006 - IAI46_04460 0.36 +0.3 955,006 - IAI46_04460 0.36 +0.7 955,007 + IAI46_04460 0.36 +0.4 955,007 + IAI46_04460 0.36 +0.2 955,007 + IAI46_04460 0.36 +0.9
Or see this region's nucleotide sequence