Strain Fitness in Serratia liquefaciens MT49 around IAI46_04445

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04440 and IAI46_04445 are separated by 383 nucleotidesIAI46_04445 and IAI46_04450 are separated by 147 nucleotides IAI46_04440: IAI46_04440 - hypothetical protein, at 950,308 to 950,847 _04440 IAI46_04445: IAI46_04445 - cytochrome b561, at 951,231 to 951,755 _04445 IAI46_04450: IAI46_04450 - ABC transporter substrate-binding protein, at 951,903 to 953,501 _04450 Position (kb) 951 952Strain fitness (log2 ratio) -1 0 1 2at 950.264 kb on - strandat 950.322 kb on + strandat 950.380 kb on - strand, within IAI46_04440at 950.381 kb on + strand, within IAI46_04440at 950.389 kb on - strand, within IAI46_04440at 950.450 kb on + strand, within IAI46_04440at 950.451 kb on - strand, within IAI46_04440at 950.498 kb on + strand, within IAI46_04440at 950.509 kb on + strand, within IAI46_04440at 950.525 kb on - strand, within IAI46_04440at 950.535 kb on + strand, within IAI46_04440at 950.535 kb on + strand, within IAI46_04440at 950.536 kb on - strand, within IAI46_04440at 950.604 kb on + strand, within IAI46_04440at 950.604 kb on + strand, within IAI46_04440at 950.605 kb on - strand, within IAI46_04440at 950.615 kb on + strand, within IAI46_04440at 950.616 kb on - strand, within IAI46_04440at 950.642 kb on + strand, within IAI46_04440at 950.643 kb on - strand, within IAI46_04440at 950.643 kb on - strand, within IAI46_04440at 950.725 kb on + strand, within IAI46_04440at 950.725 kb on + strand, within IAI46_04440at 950.726 kb on - strand, within IAI46_04440at 950.726 kb on - strand, within IAI46_04440at 950.770 kb on - strand, within IAI46_04440at 950.770 kb on - strand, within IAI46_04440at 950.886 kb on + strandat 950.942 kb on + strandat 950.943 kb on - strandat 950.943 kb on - strandat 950.975 kb on - strandat 951.068 kb on + strandat 951.068 kb on + strandat 951.104 kb on - strandat 951.104 kb on - strandat 951.107 kb on + strandat 951.120 kb on - strandat 951.121 kb on + strandat 951.200 kb on - strandat 951.257 kb on + strandat 951.258 kb on - strandat 951.284 kb on + strand, within IAI46_04445at 951.284 kb on + strand, within IAI46_04445at 951.285 kb on - strand, within IAI46_04445at 951.285 kb on - strand, within IAI46_04445at 951.286 kb on + strand, within IAI46_04445at 951.286 kb on + strand, within IAI46_04445at 951.286 kb on + strand, within IAI46_04445at 951.287 kb on - strand, within IAI46_04445at 951.354 kb on - strand, within IAI46_04445at 951.366 kb on - strand, within IAI46_04445at 951.448 kb on + strand, within IAI46_04445at 951.458 kb on - strand, within IAI46_04445at 951.458 kb on - strand, within IAI46_04445at 951.609 kb on + strand, within IAI46_04445at 951.610 kb on - strand, within IAI46_04445at 951.610 kb on - strand, within IAI46_04445at 951.649 kb on + strand, within IAI46_04445at 951.649 kb on + strand, within IAI46_04445at 951.755 kb on + strandat 951.755 kb on + strandat 951.756 kb on - strandat 951.757 kb on + strandat 951.757 kb on + strandat 951.757 kb on + strandat 951.757 kb on + strandat 951.758 kb on - strandat 951.758 kb on - strandat 951.758 kb on - strandat 951.758 kb on - strandat 951.777 kb on - strandat 951.823 kb on - strandat 951.979 kb on + strandat 951.979 kb on + strandat 951.980 kb on - strandat 952.049 kb on - strandat 952.049 kb on - strandat 952.108 kb on + strand, within IAI46_04450at 952.109 kb on - strand, within IAI46_04450at 952.213 kb on + strand, within IAI46_04450at 952.214 kb on - strand, within IAI46_04450at 952.214 kb on - strand, within IAI46_04450at 952.255 kb on + strand, within IAI46_04450at 952.256 kb on - strand, within IAI46_04450at 952.256 kb on - strand, within IAI46_04450at 952.256 kb on - strand, within IAI46_04450at 952.290 kb on + strand, within IAI46_04450at 952.380 kb on - strand, within IAI46_04450at 952.380 kb on - strand, within IAI46_04450at 952.444 kb on + strand, within IAI46_04450at 952.444 kb on + strand, within IAI46_04450at 952.444 kb on + strand, within IAI46_04450at 952.445 kb on - strand, within IAI46_04450at 952.471 kb on + strand, within IAI46_04450at 952.472 kb on - strand, within IAI46_04450at 952.502 kb on - strand, within IAI46_04450at 952.562 kb on - strand, within IAI46_04450at 952.562 kb on - strand, within IAI46_04450at 952.562 kb on - strand, within IAI46_04450at 952.712 kb on + strand, within IAI46_04450at 952.713 kb on - strand, within IAI46_04450

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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950,264 - +0.2
950,322 + +0.3
950,380 - IAI46_04440 0.13 +0.8
950,381 + IAI46_04440 0.14 +0.1
950,389 - IAI46_04440 0.15 -0.1
950,450 + IAI46_04440 0.26 -1.5
950,451 - IAI46_04440 0.26 +0.0
950,498 + IAI46_04440 0.35 +0.1
950,509 + IAI46_04440 0.37 +0.5
950,525 - IAI46_04440 0.40 +0.3
950,535 + IAI46_04440 0.42 +0.3
950,535 + IAI46_04440 0.42 -0.5
950,536 - IAI46_04440 0.42 -0.2
950,604 + IAI46_04440 0.55 -0.5
950,604 + IAI46_04440 0.55 +0.3
950,605 - IAI46_04440 0.55 -1.3
950,615 + IAI46_04440 0.57 -0.1
950,616 - IAI46_04440 0.57 +0.6
950,642 + IAI46_04440 0.62 +0.8
950,643 - IAI46_04440 0.62 +0.3
950,643 - IAI46_04440 0.62 -0.1
950,725 + IAI46_04440 0.77 +0.4
950,725 + IAI46_04440 0.77 +0.4
950,726 - IAI46_04440 0.77 +0.3
950,726 - IAI46_04440 0.77 -0.1
950,770 - IAI46_04440 0.86 -0.2
950,770 - IAI46_04440 0.86 +2.1
950,886 + +0.1
950,942 + -1.3
950,943 - +0.6
950,943 - +0.7
950,975 - +0.9
951,068 + +1.5
951,068 + -0.3
951,104 - +0.1
951,104 - +0.9
951,107 + -0.3
951,120 - -0.5
951,121 + +0.6
951,200 - -0.2
951,257 + +0.7
951,258 - +2.1
951,284 + IAI46_04445 0.10 +1.9
951,284 + IAI46_04445 0.10 -0.9
951,285 - IAI46_04445 0.10 -0.8
951,285 - IAI46_04445 0.10 +1.2
951,286 + IAI46_04445 0.10 -1.1
951,286 + IAI46_04445 0.10 +0.5
951,286 + IAI46_04445 0.10 -0.2
951,287 - IAI46_04445 0.11 -0.9
951,354 - IAI46_04445 0.23 -0.1
951,366 - IAI46_04445 0.26 +0.5
951,448 + IAI46_04445 0.41 +0.2
951,458 - IAI46_04445 0.43 +0.5
951,458 - IAI46_04445 0.43 -1.2
951,609 + IAI46_04445 0.72 +0.5
951,610 - IAI46_04445 0.72 +0.5
951,610 - IAI46_04445 0.72 +0.1
951,649 + IAI46_04445 0.80 -0.5
951,649 + IAI46_04445 0.80 -0.2
951,755 + +0.1
951,755 + +1.7
951,756 - +0.1
951,757 + -0.1
951,757 + -0.4
951,757 + -0.5
951,757 + +0.7
951,758 - -0.4
951,758 - +0.7
951,758 - -0.1
951,758 - +0.6
951,777 - -0.4
951,823 - -0.9
951,979 + +0.5
951,979 + -0.6
951,980 - -0.7
952,049 - +2.3
952,049 - -1.4
952,108 + IAI46_04450 0.13 +0.3
952,109 - IAI46_04450 0.13 +0.0
952,213 + IAI46_04450 0.19 -0.5
952,214 - IAI46_04450 0.19 +0.1
952,214 - IAI46_04450 0.19 -0.8
952,255 + IAI46_04450 0.22 -0.4
952,256 - IAI46_04450 0.22 -0.5
952,256 - IAI46_04450 0.22 +0.0
952,256 - IAI46_04450 0.22 -1.1
952,290 + IAI46_04450 0.24 -0.5
952,380 - IAI46_04450 0.30 +0.3
952,380 - IAI46_04450 0.30 +0.9
952,444 + IAI46_04450 0.34 +0.2
952,444 + IAI46_04450 0.34 -0.4
952,444 + IAI46_04450 0.34 +0.3
952,445 - IAI46_04450 0.34 -0.8
952,471 + IAI46_04450 0.36 -0.1
952,472 - IAI46_04450 0.36 +0.2
952,502 - IAI46_04450 0.37 +0.6
952,562 - IAI46_04450 0.41 -0.1
952,562 - IAI46_04450 0.41 +0.1
952,562 - IAI46_04450 0.41 -0.9
952,712 + IAI46_04450 0.51 +0.0
952,713 - IAI46_04450 0.51 -0.1

Or see this region's nucleotide sequence