Strain Fitness in Serratia liquefaciens MT49 around IAI46_04220

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04210 and IAI46_04215 are separated by 9 nucleotidesIAI46_04215 and IAI46_04220 overlap by 40 nucleotidesIAI46_04220 and IAI46_04225 are separated by 89 nucleotidesIAI46_04225 and IAI46_04230 are separated by 3 nucleotides IAI46_04210: IAI46_04210 - siderophore-interacting protein, at 908,077 to 908,961 _04210 IAI46_04215: IAI46_04215 - type II toxin-antitoxin system RelE/ParE family toxin, at 908,971 to 909,210 _04215 IAI46_04220: IAI46_04220 - ribbon-helix-helix protein, CopG family, at 909,171 to 909,323 _04220 IAI46_04225: IAI46_04225 - oxalurate catabolism protein HpxZ, at 909,413 to 909,796 _04225 IAI46_04230: IAI46_04230 - AtzE family amidohydrolase, at 909,800 to 911,200 _04230 Position (kb) 909 910Strain fitness (log2 ratio) -1 0 1 2at 908.284 kb on + strand, within IAI46_04210at 908.284 kb on + strand, within IAI46_04210at 908.286 kb on + strand, within IAI46_04210at 908.287 kb on - strand, within IAI46_04210at 908.287 kb on - strand, within IAI46_04210at 908.326 kb on + strand, within IAI46_04210at 908.327 kb on - strand, within IAI46_04210at 908.327 kb on - strand, within IAI46_04210at 908.328 kb on + strand, within IAI46_04210at 908.439 kb on + strand, within IAI46_04210at 908.451 kb on - strand, within IAI46_04210at 908.677 kb on + strand, within IAI46_04210at 908.719 kb on - strand, within IAI46_04210at 908.750 kb on + strand, within IAI46_04210at 908.755 kb on - strand, within IAI46_04210at 908.755 kb on - strand, within IAI46_04210at 908.755 kb on - strand, within IAI46_04210at 908.755 kb on - strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.899 kb on + strandat 908.950 kb on + strandat 908.951 kb on - strandat 908.951 kb on - strandat 908.951 kb on - strandat 909.035 kb on + strand, within IAI46_04215at 909.045 kb on + strand, within IAI46_04215at 909.045 kb on + strand, within IAI46_04215at 909.097 kb on - strand, within IAI46_04215at 909.150 kb on + strand, within IAI46_04215at 909.151 kb on - strand, within IAI46_04215at 909.209 kb on - strandat 909.231 kb on - strand, within IAI46_04220at 909.231 kb on - strand, within IAI46_04220at 909.284 kb on + strand, within IAI46_04220at 909.285 kb on - strand, within IAI46_04220at 909.285 kb on - strand, within IAI46_04220at 909.285 kb on - strand, within IAI46_04220at 909.285 kb on - strand, within IAI46_04220at 909.323 kb on + strandat 909.323 kb on + strandat 909.324 kb on - strandat 909.324 kb on - strandat 909.324 kb on - strandat 909.324 kb on - strandat 909.324 kb on - strandat 909.338 kb on - strandat 909.338 kb on - strandat 909.342 kb on - strandat 909.347 kb on + strandat 909.351 kb on - strandat 909.351 kb on - strandat 909.351 kb on - strandat 909.363 kb on + strandat 909.363 kb on + strandat 909.364 kb on - strandat 909.364 kb on - strandat 909.364 kb on - strandat 909.366 kb on - strandat 909.366 kb on - strandat 909.366 kb on - strandat 909.538 kb on + strand, within IAI46_04225at 909.539 kb on - strand, within IAI46_04225at 909.549 kb on + strand, within IAI46_04225at 909.549 kb on + strand, within IAI46_04225at 909.549 kb on + strand, within IAI46_04225at 909.549 kb on + strand, within IAI46_04225at 909.549 kb on + strand, within IAI46_04225at 909.550 kb on - strand, within IAI46_04225at 909.550 kb on - strand, within IAI46_04225at 909.550 kb on - strand, within IAI46_04225at 909.706 kb on + strand, within IAI46_04225at 909.706 kb on + strand, within IAI46_04225at 909.706 kb on + strand, within IAI46_04225at 909.706 kb on + strand, within IAI46_04225at 909.782 kb on - strandat 909.783 kb on + strandat 909.783 kb on + strandat 909.784 kb on - strandat 909.784 kb on - strandat 909.784 kb on - strandat 909.801 kb on + strandat 909.802 kb on - strandat 909.856 kb on - strandat 909.994 kb on + strand, within IAI46_04230at 910.027 kb on + strand, within IAI46_04230at 910.027 kb on + strand, within IAI46_04230at 910.028 kb on - strand, within IAI46_04230at 910.028 kb on - strand, within IAI46_04230at 910.028 kb on - strand, within IAI46_04230at 910.028 kb on - strand, within IAI46_04230at 910.028 kb on - strand, within IAI46_04230at 910.132 kb on + strand, within IAI46_04230at 910.155 kb on + strand, within IAI46_04230at 910.155 kb on + strand, within IAI46_04230at 910.155 kb on + strand, within IAI46_04230at 910.155 kb on + strand, within IAI46_04230at 910.156 kb on - strand, within IAI46_04230at 910.246 kb on - strand, within IAI46_04230

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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908,284 + IAI46_04210 0.23 -0.2
908,284 + IAI46_04210 0.23 +0.1
908,286 + IAI46_04210 0.24 -0.3
908,287 - IAI46_04210 0.24 +0.4
908,287 - IAI46_04210 0.24 +0.6
908,326 + IAI46_04210 0.28 +0.1
908,327 - IAI46_04210 0.28 +0.7
908,327 - IAI46_04210 0.28 +0.0
908,328 + IAI46_04210 0.28 +0.3
908,439 + IAI46_04210 0.41 +0.8
908,451 - IAI46_04210 0.42 +1.1
908,677 + IAI46_04210 0.68 +0.1
908,719 - IAI46_04210 0.73 -0.1
908,750 + IAI46_04210 0.76 -0.1
908,755 - IAI46_04210 0.77 -0.2
908,755 - IAI46_04210 0.77 +0.4
908,755 - IAI46_04210 0.77 +1.4
908,755 - IAI46_04210 0.77 +1.3
908,851 + IAI46_04210 0.87 +0.2
908,851 + IAI46_04210 0.87 +0.3
908,851 + IAI46_04210 0.87 -1.3
908,851 + IAI46_04210 0.87 -0.5
908,851 + IAI46_04210 0.87 +0.9
908,899 + +0.7
908,950 + +0.3
908,951 - -0.0
908,951 - +0.4
908,951 - +0.8
909,035 + IAI46_04215 0.27 +0.1
909,045 + IAI46_04215 0.31 +0.3
909,045 + IAI46_04215 0.31 +0.6
909,097 - IAI46_04215 0.53 +2.1
909,150 + IAI46_04215 0.75 -0.9
909,151 - IAI46_04215 0.75 -1.0
909,209 - -0.3
909,231 - IAI46_04220 0.39 +1.6
909,231 - IAI46_04220 0.39 +0.0
909,284 + IAI46_04220 0.74 -0.4
909,285 - IAI46_04220 0.75 +0.4
909,285 - IAI46_04220 0.75 -0.5
909,285 - IAI46_04220 0.75 +0.4
909,285 - IAI46_04220 0.75 +0.6
909,323 + +0.3
909,323 + -0.0
909,324 - +0.8
909,324 - -0.3
909,324 - +0.4
909,324 - +1.6
909,324 - +0.4
909,338 - +0.1
909,338 - +1.9
909,342 - +0.2
909,347 + +0.2
909,351 - -1.2
909,351 - +0.3
909,351 - +1.0
909,363 + -0.1
909,363 + +0.0
909,364 - +0.6
909,364 - +0.6
909,364 - +0.3
909,366 - +0.4
909,366 - -0.8
909,366 - -0.5
909,538 + IAI46_04225 0.33 +1.1
909,539 - IAI46_04225 0.33 +0.3
909,549 + IAI46_04225 0.35 +1.3
909,549 + IAI46_04225 0.35 -0.1
909,549 + IAI46_04225 0.35 +0.2
909,549 + IAI46_04225 0.35 -1.6
909,549 + IAI46_04225 0.35 -0.0
909,550 - IAI46_04225 0.36 -1.2
909,550 - IAI46_04225 0.36 -0.3
909,550 - IAI46_04225 0.36 +0.5
909,706 + IAI46_04225 0.76 +0.7
909,706 + IAI46_04225 0.76 -0.1
909,706 + IAI46_04225 0.76 -0.9
909,706 + IAI46_04225 0.76 -0.4
909,782 - +0.7
909,783 + -1.2
909,783 + -0.5
909,784 - +0.1
909,784 - +1.0
909,784 - +0.2
909,801 + -0.6
909,802 - +0.7
909,856 - +0.1
909,994 + IAI46_04230 0.14 +0.0
910,027 + IAI46_04230 0.16 -0.5
910,027 + IAI46_04230 0.16 +0.3
910,028 - IAI46_04230 0.16 +0.1
910,028 - IAI46_04230 0.16 +0.7
910,028 - IAI46_04230 0.16 +0.1
910,028 - IAI46_04230 0.16 +0.1
910,028 - IAI46_04230 0.16 +0.6
910,132 + IAI46_04230 0.24 -0.4
910,155 + IAI46_04230 0.25 -0.7
910,155 + IAI46_04230 0.25 -0.2
910,155 + IAI46_04230 0.25 -0.0
910,155 + IAI46_04230 0.25 +0.2
910,156 - IAI46_04230 0.25 -0.6
910,246 - IAI46_04230 0.32 -0.5

Or see this region's nucleotide sequence