Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_03165 and IAI46_03170 are separated by 73 nucleotides IAI46_03170 and IAI46_03175 overlap by 4 nucleotides IAI46_03175 and IAI46_03180 are separated by 100 nucleotides
IAI46_03165: IAI46_03165 - sugar porter family MFS transporter, at 678,257 to 679,687
_03165
IAI46_03170: IAI46_03170 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 679,761 to 680,408
_03170
IAI46_03175: IAI46_03175 - 2-dehydro-3-deoxygalactonokinase, at 680,405 to 681,307
_03175
IAI46_03180: IAI46_03180 - FadR family transcriptional regulator, at 681,408 to 682,139
_03180
Position (kb) 679
680
681 Strain fitness (log2 ratio) -1
0
1
2 at 678.775 kb on + strand, within IAI46_03165 at 678.806 kb on + strand, within IAI46_03165 at 678.874 kb on - strand, within IAI46_03165 at 678.876 kb on + strand, within IAI46_03165 at 678.876 kb on + strand, within IAI46_03165 at 678.876 kb on + strand, within IAI46_03165 at 678.877 kb on - strand, within IAI46_03165 at 678.910 kb on + strand, within IAI46_03165 at 678.910 kb on + strand, within IAI46_03165 at 678.910 kb on + strand, within IAI46_03165 at 678.934 kb on - strand, within IAI46_03165 at 679.049 kb on + strand, within IAI46_03165 at 679.127 kb on + strand, within IAI46_03165 at 679.128 kb on - strand, within IAI46_03165 at 679.128 kb on - strand, within IAI46_03165 at 679.136 kb on - strand, within IAI46_03165 at 679.140 kb on - strand, within IAI46_03165 at 679.140 kb on - strand, within IAI46_03165 at 679.241 kb on - strand, within IAI46_03165 at 679.305 kb on + strand, within IAI46_03165 at 679.305 kb on + strand, within IAI46_03165 at 679.305 kb on + strand, within IAI46_03165 at 679.305 kb on + strand, within IAI46_03165 at 679.306 kb on - strand, within IAI46_03165 at 679.328 kb on + strand, within IAI46_03165 at 679.328 kb on + strand, within IAI46_03165 at 679.328 kb on + strand, within IAI46_03165 at 679.328 kb on + strand, within IAI46_03165 at 679.468 kb on + strand, within IAI46_03165 at 679.469 kb on - strand, within IAI46_03165 at 679.469 kb on - strand, within IAI46_03165 at 679.549 kb on + strand at 679.681 kb on + strand at 679.728 kb on - strand at 679.758 kb on + strand at 679.758 kb on + strand at 679.758 kb on + strand at 679.758 kb on + strand at 679.758 kb on + strand at 679.759 kb on - strand at 679.759 kb on - strand at 679.762 kb on + strand at 679.812 kb on + strand at 679.812 kb on + strand at 679.813 kb on - strand at 679.813 kb on - strand at 679.813 kb on - strand at 679.840 kb on + strand, within IAI46_03170 at 679.840 kb on + strand, within IAI46_03170 at 679.841 kb on - strand, within IAI46_03170 at 679.883 kb on + strand, within IAI46_03170 at 679.885 kb on + strand, within IAI46_03170 at 679.885 kb on + strand, within IAI46_03170 at 679.885 kb on + strand, within IAI46_03170 at 679.885 kb on + strand, within IAI46_03170 at 679.886 kb on - strand, within IAI46_03170 at 679.886 kb on - strand, within IAI46_03170 at 679.986 kb on - strand, within IAI46_03170 at 679.989 kb on - strand, within IAI46_03170 at 679.989 kb on - strand, within IAI46_03170 at 680.132 kb on + strand, within IAI46_03170 at 680.132 kb on + strand, within IAI46_03170 at 680.261 kb on + strand, within IAI46_03170 at 680.261 kb on + strand, within IAI46_03170 at 680.261 kb on + strand, within IAI46_03170 at 680.261 kb on + strand, within IAI46_03170 at 680.262 kb on - strand, within IAI46_03170 at 680.262 kb on - strand, within IAI46_03170 at 680.262 kb on - strand, within IAI46_03170 at 680.264 kb on + strand, within IAI46_03170 at 680.264 kb on + strand, within IAI46_03170 at 680.265 kb on - strand, within IAI46_03170 at 680.423 kb on + strand at 680.424 kb on - strand at 680.433 kb on + strand at 680.434 kb on - strand at 680.456 kb on - strand at 680.464 kb on + strand at 680.465 kb on - strand at 680.611 kb on - strand, within IAI46_03175 at 680.611 kb on - strand, within IAI46_03175 at 680.611 kb on - strand, within IAI46_03175 at 680.618 kb on + strand, within IAI46_03175 at 680.619 kb on - strand, within IAI46_03175 at 680.620 kb on + strand, within IAI46_03175 at 680.621 kb on - strand, within IAI46_03175 at 680.656 kb on + strand, within IAI46_03175 at 680.657 kb on - strand, within IAI46_03175 at 680.807 kb on - strand, within IAI46_03175 at 680.807 kb on - strand, within IAI46_03175 at 681.065 kb on + strand, within IAI46_03175 at 681.065 kb on + strand, within IAI46_03175 at 681.066 kb on - strand, within IAI46_03175 at 681.066 kb on - strand, within IAI46_03175 at 681.069 kb on + strand, within IAI46_03175 at 681.069 kb on + strand, within IAI46_03175 at 681.069 kb on + strand, within IAI46_03175 at 681.070 kb on - strand, within IAI46_03175 at 681.070 kb on - strand, within IAI46_03175 at 681.143 kb on + strand, within IAI46_03175 at 681.143 kb on + strand, within IAI46_03175 at 681.158 kb on + strand, within IAI46_03175 at 681.158 kb on + strand, within IAI46_03175 at 681.159 kb on - strand, within IAI46_03175 at 681.159 kb on - strand, within IAI46_03175 at 681.159 kb on - strand, within IAI46_03175 at 681.159 kb on - strand, within IAI46_03175 at 681.163 kb on + strand, within IAI46_03175 at 681.226 kb on + strand at 681.226 kb on + strand at 681.227 kb on - strand at 681.231 kb on - strand at 681.231 kb on - strand at 681.251 kb on + strand at 681.251 kb on + strand at 681.252 kb on - strand at 681.252 kb on - strand at 681.268 kb on + strand at 681.268 kb on + strand at 681.269 kb on - strand at 681.269 kb on - strand at 681.269 kb on - strand at 681.286 kb on + strand at 681.301 kb on + strand at 681.350 kb on - strand at 681.390 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 678,775 + IAI46_03165 0.36 +0.0 678,806 + IAI46_03165 0.38 +0.4 678,874 - IAI46_03165 0.43 +0.4 678,876 + IAI46_03165 0.43 -0.2 678,876 + IAI46_03165 0.43 +0.5 678,876 + IAI46_03165 0.43 -0.7 678,877 - IAI46_03165 0.43 +0.3 678,910 + IAI46_03165 0.46 -0.8 678,910 + IAI46_03165 0.46 +1.5 678,910 + IAI46_03165 0.46 -0.1 678,934 - IAI46_03165 0.47 -0.4 679,049 + IAI46_03165 0.55 +0.2 679,127 + IAI46_03165 0.61 +1.2 679,128 - IAI46_03165 0.61 -0.6 679,128 - IAI46_03165 0.61 -0.1 679,136 - IAI46_03165 0.61 -0.9 679,140 - IAI46_03165 0.62 +0.2 679,140 - IAI46_03165 0.62 +0.7 679,241 - IAI46_03165 0.69 -0.5 679,305 + IAI46_03165 0.73 +0.2 679,305 + IAI46_03165 0.73 +1.2 679,305 + IAI46_03165 0.73 +0.0 679,305 + IAI46_03165 0.73 -0.3 679,306 - IAI46_03165 0.73 +0.2 679,328 + IAI46_03165 0.75 +0.8 679,328 + IAI46_03165 0.75 +0.5 679,328 + IAI46_03165 0.75 -0.3 679,328 + IAI46_03165 0.75 -0.3 679,468 + IAI46_03165 0.85 +0.3 679,469 - IAI46_03165 0.85 +0.8 679,469 - IAI46_03165 0.85 +1.0 679,549 + +1.2 679,681 + +1.8 679,728 - +1.1 679,758 + -0.5 679,758 + -0.1 679,758 + -0.2 679,758 + -1.2 679,758 + +0.5 679,759 - +1.0 679,759 - -0.2 679,762 + +0.4 679,812 + -0.2 679,812 + +0.8 679,813 - +0.3 679,813 - +1.1 679,813 - +0.3 679,840 + IAI46_03170 0.12 +1.9 679,840 + IAI46_03170 0.12 -0.2 679,841 - IAI46_03170 0.12 -0.8 679,883 + IAI46_03170 0.19 +1.0 679,885 + IAI46_03170 0.19 +0.0 679,885 + IAI46_03170 0.19 -0.3 679,885 + IAI46_03170 0.19 -0.4 679,885 + IAI46_03170 0.19 +1.6 679,886 - IAI46_03170 0.19 +1.2 679,886 - IAI46_03170 0.19 +1.0 679,986 - IAI46_03170 0.35 +0.4 679,989 - IAI46_03170 0.35 +0.7 679,989 - IAI46_03170 0.35 +0.9 680,132 + IAI46_03170 0.57 +0.3 680,132 + IAI46_03170 0.57 +1.2 680,261 + IAI46_03170 0.77 +0.8 680,261 + IAI46_03170 0.77 +0.9 680,261 + IAI46_03170 0.77 +0.1 680,261 + IAI46_03170 0.77 -0.0 680,262 - IAI46_03170 0.77 +1.7 680,262 - IAI46_03170 0.77 -0.1 680,262 - IAI46_03170 0.77 -0.6 680,264 + IAI46_03170 0.78 -0.8 680,264 + IAI46_03170 0.78 +0.9 680,265 - IAI46_03170 0.78 -0.3 680,423 + -0.0 680,424 - -0.3 680,433 + +0.6 680,434 - +0.0 680,456 - +0.6 680,464 + -0.1 680,465 - +1.7 680,611 - IAI46_03175 0.23 +0.5 680,611 - IAI46_03175 0.23 -0.0 680,611 - IAI46_03175 0.23 +0.3 680,618 + IAI46_03175 0.24 +1.2 680,619 - IAI46_03175 0.24 +1.1 680,620 + IAI46_03175 0.24 +0.1 680,621 - IAI46_03175 0.24 +0.5 680,656 + IAI46_03175 0.28 -0.1 680,657 - IAI46_03175 0.28 -0.3 680,807 - IAI46_03175 0.45 +0.7 680,807 - IAI46_03175 0.45 +0.5 681,065 + IAI46_03175 0.73 -1.3 681,065 + IAI46_03175 0.73 -0.0 681,066 - IAI46_03175 0.73 -0.3 681,066 - IAI46_03175 0.73 +0.7 681,069 + IAI46_03175 0.74 -0.8 681,069 + IAI46_03175 0.74 -0.3 681,069 + IAI46_03175 0.74 -0.3 681,070 - IAI46_03175 0.74 -0.0 681,070 - IAI46_03175 0.74 +0.1 681,143 + IAI46_03175 0.82 -0.2 681,143 + IAI46_03175 0.82 -0.1 681,158 + IAI46_03175 0.83 +0.5 681,158 + IAI46_03175 0.83 -0.3 681,159 - IAI46_03175 0.83 +1.4 681,159 - IAI46_03175 0.83 +0.7 681,159 - IAI46_03175 0.83 +0.3 681,159 - IAI46_03175 0.83 -0.2 681,163 + IAI46_03175 0.84 +0.3 681,226 + -1.2 681,226 + +0.4 681,227 - -0.5 681,231 - +0.0 681,231 - +0.3 681,251 + -0.3 681,251 + +0.1 681,252 - -0.5 681,252 - -0.7 681,268 + +0.1 681,268 + +0.6 681,269 - +0.1 681,269 - -0.3 681,269 - +0.3 681,286 + -0.4 681,301 + +0.5 681,350 - -0.7 681,390 + +0.6
Or see this region's nucleotide sequence