Strain Fitness in Serratia liquefaciens MT49 around IAI46_02955

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02950 and IAI46_02955 are separated by 33 nucleotidesIAI46_02955 and IAI46_02960 are separated by 98 nucleotides IAI46_02950: IAI46_02950 - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 628,959 to 630,215 _02950 IAI46_02955: IAI46_02955 - zinc-binding alcohol dehydrogenase family protein, at 630,249 to 631,250 _02955 IAI46_02960: IAI46_02960 - LysR family transcriptional regulator, at 631,349 to 632,260 _02960 Position (kb) 630 631 632Strain fitness (log2 ratio) -2 -1 0 1 2at 629.356 kb on - strand, within IAI46_02950at 629.372 kb on + strand, within IAI46_02950at 629.372 kb on + strand, within IAI46_02950at 629.373 kb on - strand, within IAI46_02950at 629.373 kb on - strand, within IAI46_02950at 629.406 kb on + strand, within IAI46_02950at 629.467 kb on + strand, within IAI46_02950at 629.468 kb on - strand, within IAI46_02950at 629.480 kb on + strand, within IAI46_02950at 629.480 kb on + strand, within IAI46_02950at 629.480 kb on + strand, within IAI46_02950at 629.480 kb on + strand, within IAI46_02950at 629.481 kb on - strand, within IAI46_02950at 629.481 kb on - strand, within IAI46_02950at 629.481 kb on - strand, within IAI46_02950at 629.485 kb on - strand, within IAI46_02950at 629.567 kb on + strand, within IAI46_02950at 629.568 kb on - strand, within IAI46_02950at 629.611 kb on - strand, within IAI46_02950at 629.619 kb on + strand, within IAI46_02950at 629.620 kb on - strand, within IAI46_02950at 629.620 kb on - strand, within IAI46_02950at 629.620 kb on - strand, within IAI46_02950at 629.620 kb on - strand, within IAI46_02950at 629.621 kb on + strand, within IAI46_02950at 629.622 kb on - strand, within IAI46_02950at 629.622 kb on - strand, within IAI46_02950at 629.622 kb on - strand, within IAI46_02950at 629.705 kb on + strand, within IAI46_02950at 629.706 kb on - strand, within IAI46_02950at 629.746 kb on - strand, within IAI46_02950at 629.757 kb on + strand, within IAI46_02950at 629.758 kb on - strand, within IAI46_02950at 629.794 kb on + strand, within IAI46_02950at 629.795 kb on - strand, within IAI46_02950at 629.795 kb on - strand, within IAI46_02950at 629.799 kb on + strand, within IAI46_02950at 629.799 kb on + strand, within IAI46_02950at 629.808 kb on + strand, within IAI46_02950at 629.839 kb on - strand, within IAI46_02950at 629.867 kb on + strand, within IAI46_02950at 629.868 kb on - strand, within IAI46_02950at 629.923 kb on - strand, within IAI46_02950at 629.947 kb on + strand, within IAI46_02950at 629.947 kb on + strand, within IAI46_02950at 629.947 kb on + strand, within IAI46_02950at 629.967 kb on + strand, within IAI46_02950at 630.105 kb on + strandat 630.105 kb on + strandat 630.106 kb on - strandat 630.106 kb on - strandat 630.109 kb on + strandat 630.109 kb on + strandat 630.109 kb on + strandat 630.109 kb on + strandat 630.110 kb on - strandat 630.154 kb on + strandat 630.155 kb on - strandat 630.253 kb on + strandat 630.254 kb on - strandat 630.278 kb on + strandat 630.278 kb on + strandat 630.278 kb on + strandat 630.278 kb on + strandat 630.278 kb on + strandat 630.278 kb on + strandat 630.278 kb on + strandat 630.279 kb on - strandat 630.279 kb on - strandat 630.279 kb on - strandat 630.279 kb on - strandat 630.279 kb on - strandat 630.279 kb on - strandat 630.279 kb on - strandat 630.279 kb on - strandat 630.437 kb on + strand, within IAI46_02955at 630.437 kb on + strand, within IAI46_02955at 630.437 kb on + strand, within IAI46_02955at 630.438 kb on - strand, within IAI46_02955at 630.438 kb on - strand, within IAI46_02955at 630.438 kb on - strand, within IAI46_02955at 630.602 kb on + strand, within IAI46_02955at 630.602 kb on + strand, within IAI46_02955at 630.602 kb on + strand, within IAI46_02955at 630.602 kb on + strand, within IAI46_02955at 630.602 kb on + strand, within IAI46_02955at 630.602 kb on + strand, within IAI46_02955at 630.602 kb on + strand, within IAI46_02955at 630.603 kb on - strand, within IAI46_02955at 630.603 kb on - strand, within IAI46_02955at 630.603 kb on - strand, within IAI46_02955at 630.603 kb on - strand, within IAI46_02955at 630.604 kb on + strand, within IAI46_02955at 630.604 kb on + strand, within IAI46_02955at 630.639 kb on - strand, within IAI46_02955at 630.655 kb on + strand, within IAI46_02955at 630.656 kb on - strand, within IAI46_02955at 630.927 kb on - strand, within IAI46_02955at 630.929 kb on + strand, within IAI46_02955at 630.976 kb on - strand, within IAI46_02955at 630.989 kb on - strand, within IAI46_02955at 631.166 kb on - strandat 631.200 kb on + strandat 631.201 kb on - strandat 631.201 kb on - strandat 631.227 kb on + strandat 631.228 kb on - strandat 631.228 kb on - strandat 631.241 kb on + strandat 631.241 kb on + strandat 631.273 kb on + strandat 631.284 kb on + strandat 631.285 kb on - strandat 631.285 kb on - strandat 631.307 kb on - strandat 631.307 kb on - strandat 631.319 kb on - strandat 631.337 kb on - strandat 631.358 kb on - strandat 631.358 kb on - strandat 631.411 kb on + strandat 631.865 kb on + strand, within IAI46_02960at 631.865 kb on + strand, within IAI46_02960at 631.866 kb on - strand, within IAI46_02960at 631.878 kb on - strand, within IAI46_02960at 631.999 kb on + strand, within IAI46_02960at 632.000 kb on - strand, within IAI46_02960at 632.000 kb on - strand, within IAI46_02960at 632.000 kb on - strand, within IAI46_02960at 632.009 kb on - strand, within IAI46_02960at 632.018 kb on + strand, within IAI46_02960at 632.019 kb on - strand, within IAI46_02960at 632.054 kb on - strand, within IAI46_02960at 632.054 kb on - strand, within IAI46_02960at 632.085 kb on + strand, within IAI46_02960at 632.147 kb on + strand, within IAI46_02960at 632.148 kb on - strand, within IAI46_02960at 632.197 kb on + strandat 632.198 kb on - strandat 632.235 kb on - strandat 632.235 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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629,356 - IAI46_02950 0.32 +0.9
629,372 + IAI46_02950 0.33 +0.1
629,372 + IAI46_02950 0.33 +0.1
629,373 - IAI46_02950 0.33 +1.1
629,373 - IAI46_02950 0.33 -0.1
629,406 + IAI46_02950 0.36 +0.7
629,467 + IAI46_02950 0.40 -0.0
629,468 - IAI46_02950 0.40 +0.5
629,480 + IAI46_02950 0.41 -0.1
629,480 + IAI46_02950 0.41 -0.3
629,480 + IAI46_02950 0.41 +1.3
629,480 + IAI46_02950 0.41 -0.1
629,481 - IAI46_02950 0.42 +0.2
629,481 - IAI46_02950 0.42 -0.5
629,481 - IAI46_02950 0.42 -0.1
629,485 - IAI46_02950 0.42 +0.6
629,567 + IAI46_02950 0.48 +0.8
629,568 - IAI46_02950 0.48 +2.0
629,611 - IAI46_02950 0.52 +1.4
629,619 + IAI46_02950 0.53 -0.1
629,620 - IAI46_02950 0.53 +1.0
629,620 - IAI46_02950 0.53 +0.2
629,620 - IAI46_02950 0.53 +1.1
629,620 - IAI46_02950 0.53 +0.5
629,621 + IAI46_02950 0.53 -0.2
629,622 - IAI46_02950 0.53 +0.1
629,622 - IAI46_02950 0.53 +0.1
629,622 - IAI46_02950 0.53 -0.1
629,705 + IAI46_02950 0.59 +0.2
629,706 - IAI46_02950 0.59 -0.7
629,746 - IAI46_02950 0.63 +0.5
629,757 + IAI46_02950 0.63 +0.5
629,758 - IAI46_02950 0.64 -1.6
629,794 + IAI46_02950 0.66 -0.4
629,795 - IAI46_02950 0.67 +0.1
629,795 - IAI46_02950 0.67 +0.2
629,799 + IAI46_02950 0.67 +1.4
629,799 + IAI46_02950 0.67 -0.7
629,808 + IAI46_02950 0.68 +0.7
629,839 - IAI46_02950 0.70 -0.9
629,867 + IAI46_02950 0.72 +0.3
629,868 - IAI46_02950 0.72 -0.1
629,923 - IAI46_02950 0.77 +0.0
629,947 + IAI46_02950 0.79 +1.0
629,947 + IAI46_02950 0.79 -0.1
629,947 + IAI46_02950 0.79 -0.4
629,967 + IAI46_02950 0.80 +0.4
630,105 + -0.2
630,105 + +0.0
630,106 - -1.0
630,106 - +0.3
630,109 + +0.4
630,109 + +0.2
630,109 + +0.1
630,109 + +0.1
630,110 - +0.8
630,154 + +0.3
630,155 - +0.2
630,253 + -1.0
630,254 - +1.2
630,278 + -0.3
630,278 + -0.0
630,278 + +0.2
630,278 + +0.0
630,278 + +1.1
630,278 + +0.2
630,278 + +0.5
630,279 - -0.3
630,279 - -0.4
630,279 - -0.1
630,279 - +0.6
630,279 - +1.3
630,279 - -0.2
630,279 - -1.9
630,279 - +0.3
630,437 + IAI46_02955 0.19 +0.4
630,437 + IAI46_02955 0.19 +1.1
630,437 + IAI46_02955 0.19 +0.0
630,438 - IAI46_02955 0.19 +0.3
630,438 - IAI46_02955 0.19 -1.6
630,438 - IAI46_02955 0.19 +0.7
630,602 + IAI46_02955 0.35 +0.1
630,602 + IAI46_02955 0.35 +0.2
630,602 + IAI46_02955 0.35 +0.4
630,602 + IAI46_02955 0.35 -0.5
630,602 + IAI46_02955 0.35 +1.3
630,602 + IAI46_02955 0.35 +0.1
630,602 + IAI46_02955 0.35 -0.1
630,603 - IAI46_02955 0.35 -0.3
630,603 - IAI46_02955 0.35 +0.3
630,603 - IAI46_02955 0.35 +0.7
630,603 - IAI46_02955 0.35 +0.7
630,604 + IAI46_02955 0.35 +0.5
630,604 + IAI46_02955 0.35 +0.0
630,639 - IAI46_02955 0.39 +0.6
630,655 + IAI46_02955 0.41 +0.5
630,656 - IAI46_02955 0.41 -1.0
630,927 - IAI46_02955 0.68 -0.2
630,929 + IAI46_02955 0.68 +1.1
630,976 - IAI46_02955 0.73 +0.6
630,989 - IAI46_02955 0.74 +0.6
631,166 - +0.9
631,200 + -0.2
631,201 - +0.2
631,201 - -0.1
631,227 + +1.6
631,228 - +0.1
631,228 - -0.5
631,241 + +0.3
631,241 + +1.5
631,273 + -0.1
631,284 + +0.3
631,285 - +0.0
631,285 - -0.7
631,307 - +0.2
631,307 - +1.2
631,319 - +0.2
631,337 - -0.1
631,358 - -0.1
631,358 - +1.7
631,411 + -0.2
631,865 + IAI46_02960 0.57 +0.3
631,865 + IAI46_02960 0.57 +0.1
631,866 - IAI46_02960 0.57 +0.7
631,878 - IAI46_02960 0.58 -0.6
631,999 + IAI46_02960 0.71 +0.5
632,000 - IAI46_02960 0.71 -0.2
632,000 - IAI46_02960 0.71 +0.1
632,000 - IAI46_02960 0.71 -0.2
632,009 - IAI46_02960 0.72 -0.1
632,018 + IAI46_02960 0.73 +0.3
632,019 - IAI46_02960 0.73 +1.1
632,054 - IAI46_02960 0.77 +0.9
632,054 - IAI46_02960 0.77 +0.6
632,085 + IAI46_02960 0.81 -0.1
632,147 + IAI46_02960 0.88 +0.3
632,148 - IAI46_02960 0.88 +0.5
632,197 + +0.2
632,198 - -0.1
632,235 - +0.3
632,235 - +0.7

Or see this region's nucleotide sequence