Strain Fitness in Serratia liquefaciens MT49 around IAI46_02865

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02860 and IAI46_02865 are separated by 281 nucleotidesIAI46_02865 and IAI46_02870 overlap by 56 nucleotidesIAI46_02870 and IAI46_02875 are separated by 170 nucleotides IAI46_02860: IAI46_02860 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 611,376 to 612,419 _02860 IAI46_02865: IAI46_02865 - DNA polymerase III subunit psi, at 612,701 to 613,138 _02865 IAI46_02870: IAI46_02870 - ribosomal protein S18-alanine N-acetyltransferase, at 613,083 to 613,526 _02870 IAI46_02875: IAI46_02875 - peptide chain release factor 3, at 613,697 to 615,286 _02875 Position (kb) 612 613 614Strain fitness (log2 ratio) -1 0 1 2at 611.993 kb on - strand, within IAI46_02860at 611.993 kb on - strand, within IAI46_02860at 612.037 kb on + strand, within IAI46_02860at 612.037 kb on + strand, within IAI46_02860at 612.037 kb on + strand, within IAI46_02860at 612.037 kb on + strand, within IAI46_02860at 612.037 kb on + strand, within IAI46_02860at 612.038 kb on - strand, within IAI46_02860at 612.173 kb on - strand, within IAI46_02860at 612.175 kb on + strand, within IAI46_02860at 612.175 kb on + strand, within IAI46_02860at 612.176 kb on - strand, within IAI46_02860at 612.176 kb on - strand, within IAI46_02860at 612.176 kb on - strand, within IAI46_02860at 612.176 kb on - strand, within IAI46_02860at 612.176 kb on - strand, within IAI46_02860at 612.176 kb on - strand, within IAI46_02860at 612.259 kb on - strand, within IAI46_02860at 612.259 kb on - strand, within IAI46_02860at 612.365 kb on + strandat 612.453 kb on + strandat 612.453 kb on + strandat 612.453 kb on + strandat 612.454 kb on - strandat 612.455 kb on + strandat 612.455 kb on + strandat 612.455 kb on + strandat 612.455 kb on + strandat 612.455 kb on + strandat 612.456 kb on - strandat 612.456 kb on - strandat 612.456 kb on - strandat 612.456 kb on - strandat 612.456 kb on - strandat 612.471 kb on + strandat 612.548 kb on + strandat 612.637 kb on + strandat 612.642 kb on + strandat 613.092 kb on - strandat 613.097 kb on + strandat 613.097 kb on + strandat 613.200 kb on + strand, within IAI46_02870at 613.201 kb on - strand, within IAI46_02870at 613.250 kb on + strand, within IAI46_02870at 613.426 kb on - strand, within IAI46_02870at 613.426 kb on - strand, within IAI46_02870at 613.426 kb on - strand, within IAI46_02870at 613.426 kb on - strand, within IAI46_02870at 613.463 kb on + strand, within IAI46_02870at 613.463 kb on + strand, within IAI46_02870at 613.468 kb on - strand, within IAI46_02870at 613.468 kb on - strand, within IAI46_02870at 613.471 kb on - strand, within IAI46_02870at 613.524 kb on + strandat 613.525 kb on - strandat 613.610 kb on + strandat 613.610 kb on + strandat 613.618 kb on - strandat 613.622 kb on - strandat 613.676 kb on + strandat 613.676 kb on + strandat 613.897 kb on + strand, within IAI46_02875at 613.898 kb on - strand, within IAI46_02875at 613.898 kb on - strand, within IAI46_02875at 613.991 kb on - strand, within IAI46_02875at 613.991 kb on - strand, within IAI46_02875at 613.995 kb on - strand, within IAI46_02875at 613.995 kb on - strand, within IAI46_02875at 613.995 kb on - strand, within IAI46_02875at 614.068 kb on + strand, within IAI46_02875at 614.082 kb on + strand, within IAI46_02875at 614.116 kb on + strand, within IAI46_02875

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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611,993 - IAI46_02860 0.59 +0.1
611,993 - IAI46_02860 0.59 +0.6
612,037 + IAI46_02860 0.63 -0.3
612,037 + IAI46_02860 0.63 -0.0
612,037 + IAI46_02860 0.63 -0.3
612,037 + IAI46_02860 0.63 -0.5
612,037 + IAI46_02860 0.63 +0.3
612,038 - IAI46_02860 0.63 +0.1
612,173 - IAI46_02860 0.76 -0.1
612,175 + IAI46_02860 0.77 -1.5
612,175 + IAI46_02860 0.77 -0.4
612,176 - IAI46_02860 0.77 -0.0
612,176 - IAI46_02860 0.77 +0.4
612,176 - IAI46_02860 0.77 +1.2
612,176 - IAI46_02860 0.77 +0.3
612,176 - IAI46_02860 0.77 +0.8
612,176 - IAI46_02860 0.77 +0.0
612,259 - IAI46_02860 0.85 +0.6
612,259 - IAI46_02860 0.85 -1.0
612,365 + -0.0
612,453 + +0.6
612,453 + +0.0
612,453 + +0.2
612,454 - -0.1
612,455 + +0.0
612,455 + +0.1
612,455 + -0.6
612,455 + +0.2
612,455 + -0.5
612,456 - -0.4
612,456 - +0.2
612,456 - +0.1
612,456 - -0.2
612,456 - +0.2
612,471 + -0.0
612,548 + +0.2
612,637 + -0.8
612,642 + +0.1
613,092 - +0.1
613,097 + +0.5
613,097 + -0.7
613,200 + IAI46_02870 0.26 -0.1
613,201 - IAI46_02870 0.27 -0.6
613,250 + IAI46_02870 0.38 +0.1
613,426 - IAI46_02870 0.77 +0.1
613,426 - IAI46_02870 0.77 +0.0
613,426 - IAI46_02870 0.77 -0.4
613,426 - IAI46_02870 0.77 -0.0
613,463 + IAI46_02870 0.86 +1.8
613,463 + IAI46_02870 0.86 +0.5
613,468 - IAI46_02870 0.87 -0.6
613,468 - IAI46_02870 0.87 -1.0
613,471 - IAI46_02870 0.87 -0.7
613,524 + -0.1
613,525 - -0.6
613,610 + +0.3
613,610 + -0.0
613,618 - +1.3
613,622 - -0.0
613,676 + +0.8
613,676 + -0.2
613,897 + IAI46_02875 0.13 +0.4
613,898 - IAI46_02875 0.13 +0.1
613,898 - IAI46_02875 0.13 -0.5
613,991 - IAI46_02875 0.18 +0.7
613,991 - IAI46_02875 0.18 -0.5
613,995 - IAI46_02875 0.19 -0.9
613,995 - IAI46_02875 0.19 -0.4
613,995 - IAI46_02875 0.19 +0.3
614,068 + IAI46_02875 0.23 -1.7
614,082 + IAI46_02875 0.24 -0.5
614,116 + IAI46_02875 0.26 -0.5

Or see this region's nucleotide sequence