Strain Fitness in Serratia liquefaciens MT49 around IAI46_02660

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02655 and IAI46_02660 are separated by 266 nucleotidesIAI46_02660 and IAI46_02665 are separated by 102 nucleotides IAI46_02655: IAI46_02655 - iron-containing alcohol dehydrogenase, at 573,694 to 574,821 _02655 IAI46_02660: IAI46_02660 - response regulator transcription factor, at 575,088 to 575,846 _02660 IAI46_02665: IAI46_02665 - FAD-binding oxidoreductase, at 575,949 to 577,250 _02665 Position (kb) 575 576Strain fitness (log2 ratio) -2 -1 0 1at 574.091 kb on + strand, within IAI46_02655at 574.092 kb on - strand, within IAI46_02655at 574.092 kb on - strand, within IAI46_02655at 574.105 kb on - strand, within IAI46_02655at 574.217 kb on + strand, within IAI46_02655at 574.218 kb on - strand, within IAI46_02655at 574.218 kb on - strand, within IAI46_02655at 574.256 kb on + strand, within IAI46_02655at 574.257 kb on - strand, within IAI46_02655at 574.329 kb on + strand, within IAI46_02655at 574.476 kb on + strand, within IAI46_02655at 574.477 kb on - strand, within IAI46_02655at 574.478 kb on + strand, within IAI46_02655at 574.479 kb on - strand, within IAI46_02655at 574.558 kb on + strand, within IAI46_02655at 574.570 kb on + strand, within IAI46_02655at 574.571 kb on - strand, within IAI46_02655at 574.571 kb on - strand, within IAI46_02655at 574.603 kb on + strand, within IAI46_02655at 574.603 kb on + strand, within IAI46_02655at 574.604 kb on - strand, within IAI46_02655at 574.604 kb on - strand, within IAI46_02655at 574.604 kb on - strand, within IAI46_02655at 574.682 kb on + strand, within IAI46_02655at 574.714 kb on - strandat 574.714 kb on - strandat 574.853 kb on + strandat 574.853 kb on + strandat 574.853 kb on + strandat 574.854 kb on - strandat 574.854 kb on - strandat 574.854 kb on - strandat 574.854 kb on - strandat 574.911 kb on + strandat 574.912 kb on - strandat 574.913 kb on + strandat 574.913 kb on + strandat 574.914 kb on - strandat 574.914 kb on - strandat 574.914 kb on - strandat 574.916 kb on + strandat 574.970 kb on + strandat 574.977 kb on + strandat 575.005 kb on + strandat 575.005 kb on + strandat 575.005 kb on + strandat 575.006 kb on - strandat 575.006 kb on - strandat 575.022 kb on - strandat 575.066 kb on + strandat 575.094 kb on - strandat 575.149 kb on - strandat 575.193 kb on - strand, within IAI46_02660at 575.205 kb on + strand, within IAI46_02660at 575.283 kb on + strand, within IAI46_02660at 575.298 kb on + strand, within IAI46_02660at 575.299 kb on - strand, within IAI46_02660at 575.299 kb on - strand, within IAI46_02660at 575.299 kb on - strand, within IAI46_02660at 575.386 kb on - strand, within IAI46_02660at 575.386 kb on - strand, within IAI46_02660at 575.386 kb on - strand, within IAI46_02660at 575.386 kb on - strand, within IAI46_02660at 575.386 kb on - strand, within IAI46_02660at 575.390 kb on + strand, within IAI46_02660at 575.391 kb on - strand, within IAI46_02660at 575.397 kb on + strand, within IAI46_02660at 575.397 kb on + strand, within IAI46_02660at 575.398 kb on - strand, within IAI46_02660at 575.398 kb on - strand, within IAI46_02660at 575.398 kb on - strand, within IAI46_02660at 575.398 kb on - strand, within IAI46_02660at 575.400 kb on + strand, within IAI46_02660at 575.674 kb on + strand, within IAI46_02660at 575.769 kb on + strand, within IAI46_02660at 575.769 kb on + strand, within IAI46_02660at 575.770 kb on - strand, within IAI46_02660at 575.875 kb on - strandat 575.910 kb on - strandat 575.921 kb on - strandat 575.927 kb on + strandat 575.927 kb on + strandat 575.927 kb on + strandat 575.927 kb on + strandat 575.927 kb on + strandat 575.927 kb on + strandat 575.928 kb on - strandat 575.928 kb on - strandat 575.957 kb on + strandat 575.957 kb on + strandat 575.957 kb on + strandat 575.957 kb on + strandat 575.958 kb on - strandat 575.960 kb on + strandat 575.961 kb on - strandat 575.961 kb on - strandat 575.971 kb on + strandat 575.976 kb on + strandat 575.977 kb on - strandat 575.977 kb on - strandat 575.979 kb on + strandat 575.980 kb on - strandat 576.136 kb on - strand, within IAI46_02665at 576.136 kb on - strand, within IAI46_02665at 576.298 kb on - strand, within IAI46_02665at 576.423 kb on + strand, within IAI46_02665at 576.423 kb on + strand, within IAI46_02665at 576.424 kb on - strand, within IAI46_02665at 576.465 kb on + strand, within IAI46_02665at 576.465 kb on + strand, within IAI46_02665at 576.465 kb on + strand, within IAI46_02665at 576.465 kb on + strand, within IAI46_02665at 576.465 kb on + strand, within IAI46_02665at 576.465 kb on + strand, within IAI46_02665at 576.466 kb on - strand, within IAI46_02665at 576.468 kb on - strand, within IAI46_02665at 576.468 kb on - strand, within IAI46_02665at 576.468 kb on - strand, within IAI46_02665at 576.594 kb on + strand, within IAI46_02665at 576.635 kb on - strand, within IAI46_02665at 576.635 kb on - strand, within IAI46_02665at 576.635 kb on - strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.714 kb on - strand, within IAI46_02665at 576.714 kb on - strand, within IAI46_02665at 576.714 kb on - strand, within IAI46_02665at 576.718 kb on - strand, within IAI46_02665at 576.789 kb on + strand, within IAI46_02665at 576.789 kb on + strand, within IAI46_02665at 576.817 kb on - strand, within IAI46_02665

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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574,091 + IAI46_02655 0.35 +0.7
574,092 - IAI46_02655 0.35 +1.0
574,092 - IAI46_02655 0.35 -0.6
574,105 - IAI46_02655 0.36 +1.2
574,217 + IAI46_02655 0.46 -0.7
574,218 - IAI46_02655 0.46 -0.2
574,218 - IAI46_02655 0.46 -0.3
574,256 + IAI46_02655 0.50 +0.2
574,257 - IAI46_02655 0.50 +0.8
574,329 + IAI46_02655 0.56 +0.4
574,476 + IAI46_02655 0.69 -0.7
574,477 - IAI46_02655 0.69 +0.3
574,478 + IAI46_02655 0.70 +1.1
574,479 - IAI46_02655 0.70 -0.1
574,558 + IAI46_02655 0.77 -0.6
574,570 + IAI46_02655 0.78 +0.5
574,571 - IAI46_02655 0.78 -0.8
574,571 - IAI46_02655 0.78 -0.1
574,603 + IAI46_02655 0.81 +0.2
574,603 + IAI46_02655 0.81 +0.2
574,604 - IAI46_02655 0.81 -0.2
574,604 - IAI46_02655 0.81 +1.0
574,604 - IAI46_02655 0.81 -0.8
574,682 + IAI46_02655 0.88 +1.5
574,714 - +0.6
574,714 - +0.1
574,853 + +1.3
574,853 + -0.8
574,853 + -0.8
574,854 - -0.3
574,854 - +0.0
574,854 - +0.0
574,854 - +0.1
574,911 + +0.4
574,912 - +0.5
574,913 + +0.3
574,913 + -0.1
574,914 - -0.3
574,914 - +0.1
574,914 - -0.7
574,916 + +0.2
574,970 + +0.4
574,977 + +0.2
575,005 + -0.3
575,005 + +1.3
575,005 + -0.2
575,006 - +0.6
575,006 - -0.5
575,022 - +0.5
575,066 + -0.6
575,094 - +0.2
575,149 - +0.5
575,193 - IAI46_02660 0.14 -0.2
575,205 + IAI46_02660 0.15 +0.2
575,283 + IAI46_02660 0.26 -1.4
575,298 + IAI46_02660 0.28 +0.6
575,299 - IAI46_02660 0.28 +1.6
575,299 - IAI46_02660 0.28 -0.3
575,299 - IAI46_02660 0.28 -1.7
575,386 - IAI46_02660 0.39 +1.5
575,386 - IAI46_02660 0.39 +0.4
575,386 - IAI46_02660 0.39 +0.2
575,386 - IAI46_02660 0.39 +0.7
575,386 - IAI46_02660 0.39 +0.1
575,390 + IAI46_02660 0.40 +0.4
575,391 - IAI46_02660 0.40 +0.4
575,397 + IAI46_02660 0.41 -0.4
575,397 + IAI46_02660 0.41 -0.4
575,398 - IAI46_02660 0.41 +0.3
575,398 - IAI46_02660 0.41 -1.3
575,398 - IAI46_02660 0.41 +0.0
575,398 - IAI46_02660 0.41 -0.1
575,400 + IAI46_02660 0.41 +1.1
575,674 + IAI46_02660 0.77 +0.4
575,769 + IAI46_02660 0.90 +0.7
575,769 + IAI46_02660 0.90 +0.4
575,770 - IAI46_02660 0.90 +0.2
575,875 - -0.5
575,910 - +0.2
575,921 - +0.0
575,927 + -1.5
575,927 + -0.8
575,927 + -1.0
575,927 + +0.7
575,927 + +0.0
575,927 + +0.9
575,928 - -0.4
575,928 - -0.5
575,957 + -1.2
575,957 + +0.7
575,957 + +0.2
575,957 + +0.3
575,958 - -0.0
575,960 + +0.8
575,961 - +0.5
575,961 - +0.5
575,971 + +0.6
575,976 + -0.8
575,977 - +0.8
575,977 - +0.1
575,979 + -0.2
575,980 - -0.5
576,136 - IAI46_02665 0.14 -0.1
576,136 - IAI46_02665 0.14 -1.4
576,298 - IAI46_02665 0.27 +1.0
576,423 + IAI46_02665 0.36 -0.2
576,423 + IAI46_02665 0.36 -0.4
576,424 - IAI46_02665 0.36 -0.6
576,465 + IAI46_02665 0.40 +0.7
576,465 + IAI46_02665 0.40 +0.0
576,465 + IAI46_02665 0.40 +1.3
576,465 + IAI46_02665 0.40 -0.3
576,465 + IAI46_02665 0.40 +0.9
576,465 + IAI46_02665 0.40 +0.5
576,466 - IAI46_02665 0.40 +0.1
576,468 - IAI46_02665 0.40 -0.9
576,468 - IAI46_02665 0.40 -1.1
576,468 - IAI46_02665 0.40 -0.1
576,594 + IAI46_02665 0.50 -1.1
576,635 - IAI46_02665 0.53 +0.2
576,635 - IAI46_02665 0.53 -0.4
576,635 - IAI46_02665 0.53 +0.6
576,713 + IAI46_02665 0.59 -0.2
576,713 + IAI46_02665 0.59 +0.7
576,713 + IAI46_02665 0.59 -1.1
576,713 + IAI46_02665 0.59 +0.6
576,713 + IAI46_02665 0.59 -1.8
576,713 + IAI46_02665 0.59 -0.3
576,713 + IAI46_02665 0.59 -0.1
576,714 - IAI46_02665 0.59 +0.9
576,714 - IAI46_02665 0.59 +0.2
576,714 - IAI46_02665 0.59 +0.2
576,718 - IAI46_02665 0.59 +1.0
576,789 + IAI46_02665 0.65 +1.5
576,789 + IAI46_02665 0.65 -0.1
576,817 - IAI46_02665 0.67 +0.6

Or see this region's nucleotide sequence