Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02565 and IAI46_02570 are separated by 104 nucleotides IAI46_02570 and IAI46_02575 are separated by 37 nucleotides IAI46_02575 and IAI46_02580 are separated by 586 nucleotides
IAI46_02565: IAI46_02565 - hypothetical protein, at 553,835 to 554,149
_02565
IAI46_02570: IAI46_02570 - helix-turn-helix transcriptional regulator, at 554,254 to 554,553
_02570
IAI46_02575: IAI46_02575 - YncE family protein, at 554,591 to 555,667
_02575
IAI46_02580: IAI46_02580 - porin, at 556,254 to 557,390
_02580
Position (kb) 554
555
556 Strain fitness (log2 ratio) -2
-1
0
1
2 at 553.633 kb on - strand at 553.657 kb on - strand at 553.675 kb on + strand at 553.675 kb on + strand at 553.675 kb on + strand at 553.675 kb on + strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.676 kb on - strand at 553.684 kb on + strand at 553.685 kb on - strand at 553.710 kb on - strand at 553.721 kb on - strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.752 kb on + strand at 553.753 kb on - strand at 553.753 kb on - strand at 553.786 kb on - strand at 553.786 kb on - strand at 553.797 kb on + strand at 553.797 kb on + strand at 553.797 kb on + strand at 553.797 kb on + strand at 553.798 kb on - strand at 553.798 kb on - strand at 553.798 kb on - strand at 553.798 kb on - strand at 553.798 kb on - strand at 553.798 kb on - strand at 553.799 kb on + strand at 553.799 kb on + strand at 553.799 kb on + strand at 553.799 kb on + strand at 553.799 kb on + strand at 553.800 kb on - strand at 553.800 kb on - strand at 553.817 kb on + strand at 553.834 kb on - strand at 553.995 kb on - strand, within IAI46_02565 at 553.995 kb on - strand, within IAI46_02565 at 554.059 kb on + strand, within IAI46_02565 at 554.059 kb on + strand, within IAI46_02565 at 554.060 kb on - strand, within IAI46_02565 at 554.148 kb on - strand at 554.227 kb on - strand at 554.236 kb on + strand at 554.236 kb on + strand at 554.248 kb on - strand at 554.248 kb on - strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.251 kb on + strand at 554.252 kb on - strand at 554.252 kb on - strand at 554.252 kb on - strand at 554.252 kb on - strand at 554.252 kb on - strand at 554.252 kb on - strand at 554.295 kb on + strand, within IAI46_02570 at 554.296 kb on - strand, within IAI46_02570 at 554.296 kb on - strand, within IAI46_02570 at 554.296 kb on - strand, within IAI46_02570 at 554.348 kb on + strand, within IAI46_02570 at 554.348 kb on + strand, within IAI46_02570 at 554.348 kb on + strand, within IAI46_02570 at 554.348 kb on + strand, within IAI46_02570 at 554.349 kb on - strand, within IAI46_02570 at 554.349 kb on - strand, within IAI46_02570 at 554.349 kb on - strand, within IAI46_02570 at 554.349 kb on - strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.350 kb on + strand, within IAI46_02570 at 554.351 kb on - strand, within IAI46_02570 at 554.351 kb on - strand, within IAI46_02570 at 554.351 kb on - strand, within IAI46_02570 at 554.351 kb on - strand, within IAI46_02570 at 554.373 kb on + strand, within IAI46_02570 at 554.373 kb on + strand, within IAI46_02570 at 554.407 kb on - strand, within IAI46_02570 at 554.407 kb on - strand, within IAI46_02570 at 554.432 kb on + strand, within IAI46_02570 at 554.432 kb on + strand, within IAI46_02570 at 554.469 kb on - strand, within IAI46_02570 at 554.476 kb on + strand, within IAI46_02570 at 554.745 kb on + strand, within IAI46_02575 at 554.745 kb on + strand, within IAI46_02575 at 554.796 kb on + strand, within IAI46_02575 at 554.796 kb on + strand, within IAI46_02575 at 554.796 kb on + strand, within IAI46_02575 at 554.796 kb on + strand, within IAI46_02575 at 554.796 kb on + strand, within IAI46_02575 at 554.796 kb on + strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.797 kb on - strand, within IAI46_02575 at 554.917 kb on + strand, within IAI46_02575 at 554.918 kb on - strand, within IAI46_02575 at 554.918 kb on - strand, within IAI46_02575 at 555.022 kb on + strand, within IAI46_02575 at 555.055 kb on - strand, within IAI46_02575 at 555.096 kb on + strand, within IAI46_02575 at 555.096 kb on + strand, within IAI46_02575 at 555.097 kb on - strand, within IAI46_02575 at 555.118 kb on + strand, within IAI46_02575 at 555.118 kb on + strand, within IAI46_02575 at 555.119 kb on - strand, within IAI46_02575 at 555.119 kb on - strand, within IAI46_02575 at 555.146 kb on + strand, within IAI46_02575 at 555.185 kb on - strand, within IAI46_02575 at 555.185 kb on - strand, within IAI46_02575 at 555.185 kb on - strand, within IAI46_02575 at 555.186 kb on + strand, within IAI46_02575 at 555.186 kb on + strand, within IAI46_02575 at 555.186 kb on + strand, within IAI46_02575 at 555.186 kb on + strand, within IAI46_02575 at 555.186 kb on + strand, within IAI46_02575 at 555.187 kb on - strand, within IAI46_02575 at 555.187 kb on - strand, within IAI46_02575 at 555.187 kb on - strand, within IAI46_02575 at 555.187 kb on - strand, within IAI46_02575 at 555.256 kb on + strand, within IAI46_02575 at 555.257 kb on - strand, within IAI46_02575 at 555.298 kb on + strand, within IAI46_02575 at 555.299 kb on - strand, within IAI46_02575 at 555.322 kb on + strand, within IAI46_02575 at 555.323 kb on - strand, within IAI46_02575 at 555.389 kb on - strand, within IAI46_02575 at 555.438 kb on + strand, within IAI46_02575 at 555.486 kb on + strand, within IAI46_02575 at 555.487 kb on - strand, within IAI46_02575 at 555.510 kb on + strand, within IAI46_02575 at 555.510 kb on + strand, within IAI46_02575 at 555.523 kb on - strand, within IAI46_02575 at 555.667 kb on + strand at 555.668 kb on - strand at 555.721 kb on + strand at 555.936 kb on - strand at 555.972 kb on + strand at 555.987 kb on - strand at 555.994 kb on - strand at 556.012 kb on + strand at 556.050 kb on - strand at 556.070 kb on + strand at 556.070 kb on + strand at 556.071 kb on - strand at 556.071 kb on - strand at 556.189 kb on + strand at 556.190 kb on - strand at 556.219 kb on + strand at 556.219 kb on + strand at 556.252 kb on + strand at 556.264 kb on + strand at 556.277 kb on - strand at 556.400 kb on + strand, within IAI46_02580 at 556.401 kb on - strand, within IAI46_02580 at 556.401 kb on - strand, within IAI46_02580 at 556.421 kb on + strand, within IAI46_02580 at 556.421 kb on + strand, within IAI46_02580 at 556.421 kb on + strand, within IAI46_02580 at 556.421 kb on + strand, within IAI46_02580 at 556.422 kb on - strand, within IAI46_02580 at 556.422 kb on - strand, within IAI46_02580 at 556.422 kb on - strand, within IAI46_02580 at 556.422 kb on - strand, within IAI46_02580 at 556.447 kb on - strand, within IAI46_02580 at 556.448 kb on + strand, within IAI46_02580 at 556.449 kb on - strand, within IAI46_02580 at 556.494 kb on + strand, within IAI46_02580 at 556.494 kb on + strand, within IAI46_02580 at 556.495 kb on - strand, within IAI46_02580 at 556.495 kb on - strand, within IAI46_02580 at 556.530 kb on + strand, within IAI46_02580 at 556.531 kb on - strand, within IAI46_02580 at 556.578 kb on + strand, within IAI46_02580 at 556.578 kb on + strand, within IAI46_02580 at 556.579 kb on - strand, within IAI46_02580 at 556.615 kb on + strand, within IAI46_02580 at 556.616 kb on - strand, within IAI46_02580 at 556.617 kb on + strand, within IAI46_02580 at 556.617 kb on + strand, within IAI46_02580 at 556.617 kb on + strand, within IAI46_02580 at 556.618 kb on - strand, within IAI46_02580 at 556.618 kb on - strand, within IAI46_02580 at 556.652 kb on - strand, within IAI46_02580
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 553,633 - +0.7 553,657 - +0.3 553,675 + +0.1 553,675 + +0.9 553,675 + +0.5 553,675 + +0.2 553,676 - +0.5 553,676 - -1.5 553,676 - +0.5 553,676 - +1.0 553,676 - +2.3 553,676 - +0.1 553,676 - +1.1 553,676 - +0.4 553,676 - +0.5 553,684 + +0.0 553,685 - -0.6 553,710 - +0.5 553,721 - +0.1 553,752 + -0.1 553,752 + +0.1 553,752 + -0.6 553,752 + +0.3 553,752 + +0.3 553,752 + +1.7 553,752 + +0.1 553,753 - +0.4 553,753 - -0.9 553,786 - +0.5 553,786 - +0.5 553,797 + -0.5 553,797 + +0.5 553,797 + -0.3 553,797 + -0.0 553,798 - -0.2 553,798 - +0.1 553,798 - +0.2 553,798 - +0.2 553,798 - +0.2 553,798 - +0.4 553,799 + -0.5 553,799 + +0.6 553,799 + +0.3 553,799 + -0.2 553,799 + +1.3 553,800 - -0.4 553,800 - +1.3 553,817 + +0.4 553,834 - -0.0 553,995 - IAI46_02565 0.51 +0.1 553,995 - IAI46_02565 0.51 +0.4 554,059 + IAI46_02565 0.71 -1.1 554,059 + IAI46_02565 0.71 +1.2 554,060 - IAI46_02565 0.71 +0.9 554,148 - +1.1 554,227 - +0.4 554,236 + +0.3 554,236 + +0.2 554,248 - -0.9 554,248 - +0.9 554,251 + -0.5 554,251 + +0.1 554,251 + +0.5 554,251 + -0.4 554,251 + +1.1 554,251 + +0.1 554,251 + +1.2 554,252 - +0.2 554,252 - +0.2 554,252 - +0.5 554,252 - +0.0 554,252 - -0.1 554,252 - +1.3 554,295 + IAI46_02570 0.14 +0.1 554,296 - IAI46_02570 0.14 +0.4 554,296 - IAI46_02570 0.14 +0.2 554,296 - IAI46_02570 0.14 -0.9 554,348 + IAI46_02570 0.31 +0.1 554,348 + IAI46_02570 0.31 -1.2 554,348 + IAI46_02570 0.31 +0.8 554,348 + IAI46_02570 0.31 -0.6 554,349 - IAI46_02570 0.32 -0.5 554,349 - IAI46_02570 0.32 -0.1 554,349 - IAI46_02570 0.32 +0.1 554,349 - IAI46_02570 0.32 +0.2 554,350 + IAI46_02570 0.32 +0.1 554,350 + IAI46_02570 0.32 +0.4 554,350 + IAI46_02570 0.32 +0.7 554,350 + IAI46_02570 0.32 +0.4 554,350 + IAI46_02570 0.32 +0.4 554,350 + IAI46_02570 0.32 +0.5 554,351 - IAI46_02570 0.32 +0.5 554,351 - IAI46_02570 0.32 -0.1 554,351 - IAI46_02570 0.32 -0.0 554,351 - IAI46_02570 0.32 -0.7 554,373 + IAI46_02570 0.40 +0.2 554,373 + IAI46_02570 0.40 +0.1 554,407 - IAI46_02570 0.51 +0.9 554,407 - IAI46_02570 0.51 -0.4 554,432 + IAI46_02570 0.59 +0.7 554,432 + IAI46_02570 0.59 -0.5 554,469 - IAI46_02570 0.72 +0.3 554,476 + IAI46_02570 0.74 +0.2 554,745 + IAI46_02575 0.14 -0.2 554,745 + IAI46_02575 0.14 +0.5 554,796 + IAI46_02575 0.19 +0.4 554,796 + IAI46_02575 0.19 +0.0 554,796 + IAI46_02575 0.19 -0.8 554,796 + IAI46_02575 0.19 -0.3 554,796 + IAI46_02575 0.19 -0.2 554,796 + IAI46_02575 0.19 +0.7 554,797 - IAI46_02575 0.19 -0.2 554,797 - IAI46_02575 0.19 -0.1 554,797 - IAI46_02575 0.19 +0.1 554,797 - IAI46_02575 0.19 +0.2 554,797 - IAI46_02575 0.19 +0.1 554,797 - IAI46_02575 0.19 -0.5 554,797 - IAI46_02575 0.19 +0.8 554,797 - IAI46_02575 0.19 +0.4 554,797 - IAI46_02575 0.19 +0.1 554,797 - IAI46_02575 0.19 +0.2 554,797 - IAI46_02575 0.19 -1.1 554,917 + IAI46_02575 0.30 +1.6 554,918 - IAI46_02575 0.30 +0.5 554,918 - IAI46_02575 0.30 -0.5 555,022 + IAI46_02575 0.40 +0.1 555,055 - IAI46_02575 0.43 +0.3 555,096 + IAI46_02575 0.47 +1.7 555,096 + IAI46_02575 0.47 +0.8 555,097 - IAI46_02575 0.47 +0.4 555,118 + IAI46_02575 0.49 +0.4 555,118 + IAI46_02575 0.49 +0.0 555,119 - IAI46_02575 0.49 +0.9 555,119 - IAI46_02575 0.49 +0.4 555,146 + IAI46_02575 0.52 -0.1 555,185 - IAI46_02575 0.55 -0.2 555,185 - IAI46_02575 0.55 -0.6 555,185 - IAI46_02575 0.55 -1.5 555,186 + IAI46_02575 0.55 +0.2 555,186 + IAI46_02575 0.55 -0.0 555,186 + IAI46_02575 0.55 +0.8 555,186 + IAI46_02575 0.55 -0.0 555,186 + IAI46_02575 0.55 +0.2 555,187 - IAI46_02575 0.55 +0.7 555,187 - IAI46_02575 0.55 -0.7 555,187 - IAI46_02575 0.55 -0.6 555,187 - IAI46_02575 0.55 +0.6 555,256 + IAI46_02575 0.62 +0.8 555,257 - IAI46_02575 0.62 -0.1 555,298 + IAI46_02575 0.66 -0.9 555,299 - IAI46_02575 0.66 -0.6 555,322 + IAI46_02575 0.68 +0.9 555,323 - IAI46_02575 0.68 -0.6 555,389 - IAI46_02575 0.74 +0.2 555,438 + IAI46_02575 0.79 +0.7 555,486 + IAI46_02575 0.83 -0.1 555,487 - IAI46_02575 0.83 +0.5 555,510 + IAI46_02575 0.85 +0.3 555,510 + IAI46_02575 0.85 +0.5 555,523 - IAI46_02575 0.87 +0.8 555,667 + +0.2 555,668 - -1.8 555,721 + -1.5 555,936 - +1.6 555,972 + -0.6 555,987 - +0.3 555,994 - +1.4 556,012 + +0.5 556,050 - -0.0 556,070 + +0.7 556,070 + -0.1 556,071 - -0.9 556,071 - -0.4 556,189 + -0.3 556,190 - +0.1 556,219 + -0.1 556,219 + +0.5 556,252 + -0.7 556,264 + -0.5 556,277 - -0.4 556,400 + IAI46_02580 0.13 -1.5 556,401 - IAI46_02580 0.13 +0.7 556,401 - IAI46_02580 0.13 -0.4 556,421 + IAI46_02580 0.15 +0.7 556,421 + IAI46_02580 0.15 -0.0 556,421 + IAI46_02580 0.15 -0.3 556,421 + IAI46_02580 0.15 +1.1 556,422 - IAI46_02580 0.15 -0.1 556,422 - IAI46_02580 0.15 -0.2 556,422 - IAI46_02580 0.15 +0.1 556,422 - IAI46_02580 0.15 +0.4 556,447 - IAI46_02580 0.17 +0.0 556,448 + IAI46_02580 0.17 +0.1 556,449 - IAI46_02580 0.17 -0.3 556,494 + IAI46_02580 0.21 -0.2 556,494 + IAI46_02580 0.21 -0.4 556,495 - IAI46_02580 0.21 +1.0 556,495 - IAI46_02580 0.21 +0.1 556,530 + IAI46_02580 0.24 -0.4 556,531 - IAI46_02580 0.24 -0.7 556,578 + IAI46_02580 0.28 -0.3 556,578 + IAI46_02580 0.28 +0.8 556,579 - IAI46_02580 0.29 +1.3 556,615 + IAI46_02580 0.32 +0.3 556,616 - IAI46_02580 0.32 +0.3 556,617 + IAI46_02580 0.32 +0.1 556,617 + IAI46_02580 0.32 +0.3 556,617 + IAI46_02580 0.32 -0.0 556,618 - IAI46_02580 0.32 +0.2 556,618 - IAI46_02580 0.32 -0.3 556,652 - IAI46_02580 0.35 +1.1
Or see this region's nucleotide sequence