Strain Fitness in Serratia liquefaciens MT49 around IAI46_02535

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02530 and IAI46_02535 are separated by 20 nucleotidesIAI46_02535 and IAI46_02540 are separated by 256 nucleotides IAI46_02530: IAI46_02530 - acetylornithine deacetylase, at 545,328 to 546,476 _02530 IAI46_02535: IAI46_02535 - LysR family transcriptional regulator, at 546,497 to 547,405 _02535 IAI46_02540: IAI46_02540 - GTPase, at 547,662 to 548,624 _02540 Position (kb) 546 547 548Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 545.541 kb on - strand, within IAI46_02530at 545.614 kb on - strand, within IAI46_02530at 545.724 kb on + strand, within IAI46_02530at 545.752 kb on + strand, within IAI46_02530at 545.752 kb on + strand, within IAI46_02530at 545.775 kb on - strand, within IAI46_02530at 545.820 kb on - strand, within IAI46_02530at 545.846 kb on + strand, within IAI46_02530at 545.871 kb on - strand, within IAI46_02530at 545.901 kb on + strand, within IAI46_02530at 545.902 kb on - strand, within IAI46_02530at 545.902 kb on - strand, within IAI46_02530at 545.902 kb on - strand, within IAI46_02530at 545.902 kb on - strand, within IAI46_02530at 545.902 kb on - strand, within IAI46_02530at 545.903 kb on + strand, within IAI46_02530at 545.904 kb on - strand, within IAI46_02530at 545.904 kb on - strand, within IAI46_02530at 545.931 kb on + strand, within IAI46_02530at 545.957 kb on - strand, within IAI46_02530at 546.013 kb on - strand, within IAI46_02530at 546.111 kb on - strand, within IAI46_02530at 546.203 kb on + strand, within IAI46_02530at 546.203 kb on + strand, within IAI46_02530at 546.203 kb on + strand, within IAI46_02530at 546.203 kb on + strand, within IAI46_02530at 546.204 kb on - strand, within IAI46_02530at 546.204 kb on - strand, within IAI46_02530at 546.204 kb on - strand, within IAI46_02530at 546.218 kb on - strand, within IAI46_02530at 546.285 kb on - strand, within IAI46_02530at 546.331 kb on + strand, within IAI46_02530at 546.331 kb on + strand, within IAI46_02530at 546.353 kb on + strand, within IAI46_02530at 546.405 kb on + strandat 546.405 kb on + strandat 546.405 kb on + strandat 546.406 kb on - strandat 546.411 kb on - strandat 546.505 kb on + strandat 546.505 kb on + strandat 546.506 kb on - strandat 546.506 kb on - strandat 546.524 kb on - strandat 546.646 kb on - strand, within IAI46_02535at 546.646 kb on - strand, within IAI46_02535at 546.651 kb on + strand, within IAI46_02535at 546.651 kb on + strand, within IAI46_02535at 546.652 kb on - strand, within IAI46_02535at 546.652 kb on - strand, within IAI46_02535at 546.660 kb on + strand, within IAI46_02535at 546.713 kb on + strand, within IAI46_02535at 546.736 kb on + strand, within IAI46_02535at 546.736 kb on + strand, within IAI46_02535at 546.737 kb on - strand, within IAI46_02535at 546.737 kb on - strand, within IAI46_02535at 546.743 kb on + strand, within IAI46_02535at 546.743 kb on + strand, within IAI46_02535at 546.743 kb on + strand, within IAI46_02535at 546.744 kb on - strand, within IAI46_02535at 546.744 kb on - strand, within IAI46_02535at 546.745 kb on + strand, within IAI46_02535at 546.745 kb on + strand, within IAI46_02535at 546.746 kb on - strand, within IAI46_02535at 546.787 kb on - strand, within IAI46_02535at 546.787 kb on - strand, within IAI46_02535at 546.787 kb on - strand, within IAI46_02535at 546.809 kb on + strand, within IAI46_02535at 546.810 kb on - strand, within IAI46_02535at 546.810 kb on - strand, within IAI46_02535at 546.821 kb on - strand, within IAI46_02535at 546.821 kb on - strand, within IAI46_02535at 546.821 kb on - strand, within IAI46_02535at 546.821 kb on - strand, within IAI46_02535at 546.821 kb on - strand, within IAI46_02535at 546.894 kb on + strand, within IAI46_02535at 546.894 kb on + strand, within IAI46_02535at 546.895 kb on - strand, within IAI46_02535at 546.895 kb on - strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.935 kb on - strand, within IAI46_02535at 546.935 kb on - strand, within IAI46_02535at 546.935 kb on - strand, within IAI46_02535at 546.954 kb on + strand, within IAI46_02535at 546.954 kb on + strand, within IAI46_02535at 546.954 kb on + strand, within IAI46_02535at 546.955 kb on - strand, within IAI46_02535at 546.955 kb on - strand, within IAI46_02535at 547.034 kb on + strand, within IAI46_02535at 547.035 kb on - strand, within IAI46_02535at 547.054 kb on + strand, within IAI46_02535at 547.054 kb on + strand, within IAI46_02535at 547.054 kb on + strand, within IAI46_02535at 547.055 kb on - strand, within IAI46_02535at 547.165 kb on + strand, within IAI46_02535at 547.165 kb on + strand, within IAI46_02535at 547.165 kb on + strand, within IAI46_02535at 547.166 kb on - strand, within IAI46_02535at 547.166 kb on - strand, within IAI46_02535at 547.166 kb on - strand, within IAI46_02535at 547.178 kb on + strand, within IAI46_02535at 547.200 kb on + strand, within IAI46_02535at 547.290 kb on - strand, within IAI46_02535at 547.320 kb on + strandat 547.320 kb on + strandat 547.321 kb on - strandat 547.379 kb on - strandat 547.379 kb on - strandat 547.395 kb on + strandat 547.399 kb on + strandat 547.399 kb on + strandat 547.400 kb on - strandat 547.400 kb on - strandat 547.482 kb on + strandat 547.483 kb on - strandat 547.521 kb on + strandat 547.522 kb on - strandat 547.522 kb on - strandat 547.596 kb on + strandat 547.596 kb on + strandat 547.596 kb on + strandat 547.596 kb on + strandat 547.596 kb on + strandat 547.597 kb on - strandat 547.658 kb on - strandat 547.663 kb on + strandat 547.664 kb on - strandat 547.664 kb on - strandat 547.711 kb on - strandat 547.780 kb on + strand, within IAI46_02540at 547.780 kb on + strand, within IAI46_02540at 547.780 kb on + strand, within IAI46_02540at 547.780 kb on + strand, within IAI46_02540at 547.780 kb on + strand, within IAI46_02540at 547.781 kb on - strand, within IAI46_02540at 547.781 kb on - strand, within IAI46_02540at 547.792 kb on - strand, within IAI46_02540at 547.804 kb on - strand, within IAI46_02540at 547.844 kb on + strand, within IAI46_02540at 547.845 kb on - strand, within IAI46_02540at 547.845 kb on - strand, within IAI46_02540at 547.846 kb on + strand, within IAI46_02540at 547.847 kb on - strand, within IAI46_02540at 547.847 kb on - strand, within IAI46_02540at 547.847 kb on - strand, within IAI46_02540at 547.867 kb on + strand, within IAI46_02540at 547.930 kb on + strand, within IAI46_02540at 547.931 kb on - strand, within IAI46_02540at 547.949 kb on + strand, within IAI46_02540at 547.950 kb on - strand, within IAI46_02540at 548.075 kb on + strand, within IAI46_02540at 548.076 kb on - strand, within IAI46_02540at 548.077 kb on + strand, within IAI46_02540at 548.373 kb on + strand, within IAI46_02540at 548.373 kb on + strand, within IAI46_02540

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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545,541 - IAI46_02530 0.19 -0.2
545,614 - IAI46_02530 0.25 +0.5
545,724 + IAI46_02530 0.34 +0.4
545,752 + IAI46_02530 0.37 +0.2
545,752 + IAI46_02530 0.37 -0.0
545,775 - IAI46_02530 0.39 -0.1
545,820 - IAI46_02530 0.43 -0.1
545,846 + IAI46_02530 0.45 -0.5
545,871 - IAI46_02530 0.47 +0.2
545,901 + IAI46_02530 0.50 -0.0
545,902 - IAI46_02530 0.50 -0.1
545,902 - IAI46_02530 0.50 -0.3
545,902 - IAI46_02530 0.50 +0.4
545,902 - IAI46_02530 0.50 +0.7
545,902 - IAI46_02530 0.50 -0.2
545,903 + IAI46_02530 0.50 -1.2
545,904 - IAI46_02530 0.50 -0.0
545,904 - IAI46_02530 0.50 +0.0
545,931 + IAI46_02530 0.52 -0.4
545,957 - IAI46_02530 0.55 +0.5
546,013 - IAI46_02530 0.60 -0.7
546,111 - IAI46_02530 0.68 +0.6
546,203 + IAI46_02530 0.76 +0.3
546,203 + IAI46_02530 0.76 -3.1
546,203 + IAI46_02530 0.76 +0.6
546,203 + IAI46_02530 0.76 +0.8
546,204 - IAI46_02530 0.76 +0.4
546,204 - IAI46_02530 0.76 +0.2
546,204 - IAI46_02530 0.76 +0.2
546,218 - IAI46_02530 0.77 +0.0
546,285 - IAI46_02530 0.83 -0.9
546,331 + IAI46_02530 0.87 +0.6
546,331 + IAI46_02530 0.87 -0.5
546,353 + IAI46_02530 0.89 +0.2
546,405 + +0.6
546,405 + +0.5
546,405 + +1.0
546,406 - -0.3
546,411 - +1.2
546,505 + +0.2
546,505 + +1.2
546,506 - +1.0
546,506 - -0.3
546,524 - -0.3
546,646 - IAI46_02535 0.16 -0.2
546,646 - IAI46_02535 0.16 -1.1
546,651 + IAI46_02535 0.17 +2.1
546,651 + IAI46_02535 0.17 +0.2
546,652 - IAI46_02535 0.17 +1.2
546,652 - IAI46_02535 0.17 -0.0
546,660 + IAI46_02535 0.18 +0.2
546,713 + IAI46_02535 0.24 +0.4
546,736 + IAI46_02535 0.26 +0.6
546,736 + IAI46_02535 0.26 -0.1
546,737 - IAI46_02535 0.26 +0.2
546,737 - IAI46_02535 0.26 +0.4
546,743 + IAI46_02535 0.27 +0.0
546,743 + IAI46_02535 0.27 -1.3
546,743 + IAI46_02535 0.27 +1.0
546,744 - IAI46_02535 0.27 +1.0
546,744 - IAI46_02535 0.27 -0.2
546,745 + IAI46_02535 0.27 -0.6
546,745 + IAI46_02535 0.27 -0.9
546,746 - IAI46_02535 0.27 -0.3
546,787 - IAI46_02535 0.32 +0.4
546,787 - IAI46_02535 0.32 -1.0
546,787 - IAI46_02535 0.32 +1.3
546,809 + IAI46_02535 0.34 -0.5
546,810 - IAI46_02535 0.34 +0.2
546,810 - IAI46_02535 0.34 +0.0
546,821 - IAI46_02535 0.36 -0.4
546,821 - IAI46_02535 0.36 -0.2
546,821 - IAI46_02535 0.36 -0.6
546,821 - IAI46_02535 0.36 -0.1
546,821 - IAI46_02535 0.36 -0.5
546,894 + IAI46_02535 0.44 -0.1
546,894 + IAI46_02535 0.44 +0.6
546,895 - IAI46_02535 0.44 +0.6
546,895 - IAI46_02535 0.44 +0.3
546,934 + IAI46_02535 0.48 -0.2
546,934 + IAI46_02535 0.48 +0.3
546,934 + IAI46_02535 0.48 +0.7
546,934 + IAI46_02535 0.48 +0.5
546,934 + IAI46_02535 0.48 +0.1
546,934 + IAI46_02535 0.48 +0.0
546,934 + IAI46_02535 0.48 -0.7
546,934 + IAI46_02535 0.48 -0.5
546,934 + IAI46_02535 0.48 -0.1
546,935 - IAI46_02535 0.48 -0.7
546,935 - IAI46_02535 0.48 -0.2
546,935 - IAI46_02535 0.48 +1.8
546,954 + IAI46_02535 0.50 +0.2
546,954 + IAI46_02535 0.50 +0.3
546,954 + IAI46_02535 0.50 +0.1
546,955 - IAI46_02535 0.50 -0.8
546,955 - IAI46_02535 0.50 -0.0
547,034 + IAI46_02535 0.59 -0.0
547,035 - IAI46_02535 0.59 -0.1
547,054 + IAI46_02535 0.61 +1.3
547,054 + IAI46_02535 0.61 -0.3
547,054 + IAI46_02535 0.61 -0.3
547,055 - IAI46_02535 0.61 +0.1
547,165 + IAI46_02535 0.73 +0.5
547,165 + IAI46_02535 0.73 +0.3
547,165 + IAI46_02535 0.73 -1.2
547,166 - IAI46_02535 0.74 +0.3
547,166 - IAI46_02535 0.74 +0.0
547,166 - IAI46_02535 0.74 -0.6
547,178 + IAI46_02535 0.75 +0.4
547,200 + IAI46_02535 0.77 +0.8
547,290 - IAI46_02535 0.87 +0.2
547,320 + +0.4
547,320 + +0.1
547,321 - +0.5
547,379 - -0.2
547,379 - +0.4
547,395 + -0.6
547,399 + -0.1
547,399 + +0.6
547,400 - -0.1
547,400 - +0.7
547,482 + -0.5
547,483 - -0.5
547,521 + -0.2
547,522 - +0.4
547,522 - -1.0
547,596 + +0.2
547,596 + +0.0
547,596 + +0.1
547,596 + +1.6
547,596 + -0.8
547,597 - -0.7
547,658 - -1.0
547,663 + +0.4
547,664 - +0.4
547,664 - -0.0
547,711 - -0.2
547,780 + IAI46_02540 0.12 +0.8
547,780 + IAI46_02540 0.12 +0.0
547,780 + IAI46_02540 0.12 +1.2
547,780 + IAI46_02540 0.12 -0.5
547,780 + IAI46_02540 0.12 +0.0
547,781 - IAI46_02540 0.12 -0.5
547,781 - IAI46_02540 0.12 +0.9
547,792 - IAI46_02540 0.13 +0.2
547,804 - IAI46_02540 0.15 +0.6
547,844 + IAI46_02540 0.19 +0.1
547,845 - IAI46_02540 0.19 -0.1
547,845 - IAI46_02540 0.19 +0.2
547,846 + IAI46_02540 0.19 +0.3
547,847 - IAI46_02540 0.19 -0.2
547,847 - IAI46_02540 0.19 -1.4
547,847 - IAI46_02540 0.19 +0.2
547,867 + IAI46_02540 0.21 -0.2
547,930 + IAI46_02540 0.28 +1.2
547,931 - IAI46_02540 0.28 -0.2
547,949 + IAI46_02540 0.30 +0.6
547,950 - IAI46_02540 0.30 +0.3
548,075 + IAI46_02540 0.43 +0.9
548,076 - IAI46_02540 0.43 -0.6
548,077 + IAI46_02540 0.43 -1.4
548,373 + IAI46_02540 0.74 +0.3
548,373 + IAI46_02540 0.74 +0.1

Or see this region's nucleotide sequence