Strain Fitness in Serratia liquefaciens MT49 around IAI46_02410

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02405 and IAI46_02410 are separated by 119 nucleotidesIAI46_02410 and IAI46_02415 are separated by 445 nucleotides IAI46_02405: IAI46_02405 - DEAD/DEAH box helicase family protein, at 511,782 to 515,195 _02405 IAI46_02410: IAI46_02410 - hypothetical protein, at 515,315 to 515,647 _02410 IAI46_02415: IAI46_02415 - hypothetical protein, at 516,093 to 516,701 _02415 Position (kb) 515 516Strain fitness (log2 ratio) -2 -1 0 1 2at 514.339 kb on + strand, within IAI46_02405at 514.340 kb on - strand, within IAI46_02405at 514.341 kb on + strand, within IAI46_02405at 514.342 kb on - strand, within IAI46_02405at 514.342 kb on - strand, within IAI46_02405at 514.342 kb on - strand, within IAI46_02405at 514.342 kb on - strand, within IAI46_02405at 514.431 kb on + strand, within IAI46_02405at 514.431 kb on + strand, within IAI46_02405at 514.431 kb on + strand, within IAI46_02405at 514.431 kb on + strand, within IAI46_02405at 514.431 kb on + strand, within IAI46_02405at 514.431 kb on + strand, within IAI46_02405at 514.432 kb on - strand, within IAI46_02405at 514.432 kb on - strand, within IAI46_02405at 514.432 kb on - strand, within IAI46_02405at 514.435 kb on + strand, within IAI46_02405at 514.435 kb on + strand, within IAI46_02405at 514.435 kb on + strand, within IAI46_02405at 514.436 kb on - strand, within IAI46_02405at 514.436 kb on - strand, within IAI46_02405at 514.436 kb on - strand, within IAI46_02405at 514.445 kb on - strand, within IAI46_02405at 514.445 kb on - strand, within IAI46_02405at 514.445 kb on - strand, within IAI46_02405at 514.476 kb on - strand, within IAI46_02405at 514.511 kb on + strand, within IAI46_02405at 514.511 kb on + strand, within IAI46_02405at 514.511 kb on + strand, within IAI46_02405at 514.511 kb on + strand, within IAI46_02405at 514.512 kb on - strand, within IAI46_02405at 514.512 kb on - strand, within IAI46_02405at 514.545 kb on + strand, within IAI46_02405at 514.677 kb on + strand, within IAI46_02405at 514.834 kb on + strand, within IAI46_02405at 514.851 kb on + strand, within IAI46_02405at 514.851 kb on + strand, within IAI46_02405at 514.851 kb on + strand, within IAI46_02405at 514.851 kb on + strand, within IAI46_02405at 514.852 kb on - strand, within IAI46_02405at 514.852 kb on - strand, within IAI46_02405at 514.852 kb on - strand, within IAI46_02405at 514.852 kb on - strand, within IAI46_02405at 514.852 kb on - strand, within IAI46_02405at 514.855 kb on + strandat 514.855 kb on + strandat 514.855 kb on + strandat 514.856 kb on - strandat 514.876 kb on + strandat 514.876 kb on + strandat 514.877 kb on - strandat 514.877 kb on - strandat 514.877 kb on - strandat 514.892 kb on + strandat 514.892 kb on + strandat 514.895 kb on + strandat 514.896 kb on - strandat 514.929 kb on - strandat 515.044 kb on + strandat 515.044 kb on + strandat 515.080 kb on - strandat 515.114 kb on + strandat 515.115 kb on - strandat 515.115 kb on - strandat 515.115 kb on - strandat 515.115 kb on - strandat 515.116 kb on + strandat 515.116 kb on + strandat 515.129 kb on + strandat 515.129 kb on + strandat 515.129 kb on + strandat 515.130 kb on - strandat 515.130 kb on - strandat 515.146 kb on - strandat 515.208 kb on + strandat 515.208 kb on + strandat 515.208 kb on + strandat 515.208 kb on + strandat 515.208 kb on + strandat 515.209 kb on - strandat 515.211 kb on - strandat 515.275 kb on + strandat 515.276 kb on - strandat 515.276 kb on - strandat 515.505 kb on - strand, within IAI46_02410at 515.508 kb on + strand, within IAI46_02410at 515.555 kb on + strand, within IAI46_02410at 515.556 kb on - strand, within IAI46_02410at 516.239 kb on - strand, within IAI46_02415at 516.553 kb on + strand, within IAI46_02415

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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514,339 + IAI46_02405 0.75 -0.1
514,340 - IAI46_02405 0.75 -0.1
514,341 + IAI46_02405 0.75 +0.4
514,342 - IAI46_02405 0.75 +0.5
514,342 - IAI46_02405 0.75 +0.0
514,342 - IAI46_02405 0.75 +0.8
514,342 - IAI46_02405 0.75 -1.3
514,431 + IAI46_02405 0.78 +1.6
514,431 + IAI46_02405 0.78 +1.0
514,431 + IAI46_02405 0.78 +1.1
514,431 + IAI46_02405 0.78 +0.2
514,431 + IAI46_02405 0.78 -0.4
514,431 + IAI46_02405 0.78 -0.2
514,432 - IAI46_02405 0.78 -0.2
514,432 - IAI46_02405 0.78 -1.2
514,432 - IAI46_02405 0.78 +0.2
514,435 + IAI46_02405 0.78 +0.6
514,435 + IAI46_02405 0.78 -0.5
514,435 + IAI46_02405 0.78 -0.2
514,436 - IAI46_02405 0.78 -0.8
514,436 - IAI46_02405 0.78 +0.3
514,436 - IAI46_02405 0.78 -0.4
514,445 - IAI46_02405 0.78 +0.7
514,445 - IAI46_02405 0.78 -0.0
514,445 - IAI46_02405 0.78 +1.0
514,476 - IAI46_02405 0.79 -0.0
514,511 + IAI46_02405 0.80 -2.0
514,511 + IAI46_02405 0.80 +0.1
514,511 + IAI46_02405 0.80 -0.3
514,511 + IAI46_02405 0.80 +0.1
514,512 - IAI46_02405 0.80 +0.3
514,512 - IAI46_02405 0.80 +0.7
514,545 + IAI46_02405 0.81 -1.1
514,677 + IAI46_02405 0.85 +0.4
514,834 + IAI46_02405 0.89 -0.5
514,851 + IAI46_02405 0.90 +0.7
514,851 + IAI46_02405 0.90 +0.2
514,851 + IAI46_02405 0.90 -1.9
514,851 + IAI46_02405 0.90 -0.3
514,852 - IAI46_02405 0.90 +0.4
514,852 - IAI46_02405 0.90 +0.4
514,852 - IAI46_02405 0.90 +1.1
514,852 - IAI46_02405 0.90 -0.2
514,852 - IAI46_02405 0.90 +1.2
514,855 + +0.4
514,855 + +0.2
514,855 + +0.9
514,856 - +0.9
514,876 + -0.6
514,876 + +0.7
514,877 - +0.6
514,877 - +0.7
514,877 - +2.0
514,892 + +1.0
514,892 + -0.0
514,895 + +1.0
514,896 - +0.1
514,929 - +0.2
515,044 + +0.1
515,044 + -0.0
515,080 - +0.5
515,114 + +0.7
515,115 - +0.2
515,115 - -0.0
515,115 - +0.4
515,115 - +1.6
515,116 + -0.5
515,116 + -0.9
515,129 + +1.0
515,129 + +0.8
515,129 + -0.6
515,130 - +1.5
515,130 - +0.8
515,146 - +0.8
515,208 + -1.5
515,208 + -0.9
515,208 + -0.0
515,208 + -0.3
515,208 + +0.7
515,209 - -0.4
515,211 - +0.6
515,275 + +0.7
515,276 - +0.9
515,276 - +1.1
515,505 - IAI46_02410 0.57 +0.1
515,508 + IAI46_02410 0.58 +1.4
515,555 + IAI46_02410 0.72 -0.1
515,556 - IAI46_02410 0.72 -0.1
516,239 - IAI46_02415 0.24 -0.6
516,553 + IAI46_02415 0.76 -0.3

Or see this region's nucleotide sequence